genome.fa.s645.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  126  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24389116--24389232	60	2.0	59	86	5	164	24	18	26	29	1.98
24390506--24390632	39	3.3	38	90	4	191	11	27	15	44	1.82
24395512--24395566	27	2.0	27	89	0	83	30	25	16	27	1.96
24396869--24396921	26	2.0	26	92	0	88	47	16	9	26	1.77
24398604--24398634	6	5.2	6	96	0	53	48	32	19	0	1.49
24401083--24401141	25	2.4	24	83	10	75	40	1	3	54	1.27
24405415--24405452	20	1.9	20	84	10	51	36	10	7	44	1.68
24406500--24406545	19	2.4	18	82	10	56	47	0	0	52	1.00
24414877--24414905	14	2.0	15	93	6	51	41	0	0	58	0.98
24414936--24415014	39	2.0	39	83	16	101	45	0	1	53	1.08
24417256--24417288	15	2.2	15	89	10	50	57	0	9	33	1.30
24417215--24417345	61	2.1	61	79	13	144	56	6	6	30	1.50
24422185--24422252	29	2.4	27	79	13	68	63	8	1	26	1.32
24423782--24423819	17	2.2	17	86	9	51	52	0	0	47	1.00
24425957--24426000	21	2.0	23	86	8	65	47	0	0	52	1.00
24427621--24427683	33	1.9	33	83	3	83	44	4	1	49	1.33
24430674--24430704	4	7.8	4	92	0	53	29	0	45	25	1.54
24437426--24437459	15	2.3	15	95	5	61	26	0	8	64	1.22
24437468--24437518	26	1.9	27	88	4	77	29	5	7	56	1.51
24437467--24437524	26	2.2	27	81	3	73	31	6	6	55	1.53
24438067--24438102	18	1.9	19	94	5	65	58	0	0	41	0.98
24454065--24454089	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24455158--24455206	24	2.0	24	84	7	64	36	2	0	61	1.08
24457374--24457398	13	1.9	13	100	0	50	32	0	0	68	0.90
24457712--24457764	20	2.6	21	82	11	65	71	0	1	26	0.96
24457722--24457765	22	2.1	20	87	8	61	75	0	0	25	0.81
24457840--24457904	30	2.2	29	80	2	76	15	20	27	36	1.92
24458768--24458817	18	2.8	19	82	14	54	18	2	8	72	1.19
24459502--24459554	23	2.2	24	80	9	65	79	0	18	1	0.83
24460548--24460803	45	5.7	45	73	9	200	34	2	15	47	1.60
24460599--24460803	22	9.2	22	68	9	83	33	2	16	46	1.62
24461329--24461403	16	4.6	16	75	6	78	34	14	14	36	1.87
24462009--24462056	15	3.3	15	85	2	53	75	0	8	16	1.04
24463740--24463861	58	2.1	56	85	11	158	32	8	5	53	1.54
24463912--24463965	26	2.0	29	85	10	78	38	7	3	50	1.48
24463851--24464156	121	2.5	122	81	7	358	37	9	5	47	1.59
24463851--24464169	59	5.3	58	75	13	243	37	9	5	48	1.58
24464187--24464226	15	2.6	16	88	8	64	80	7	5	7	1.03
24464491--24464515	13	1.9	13	100	0	50	0	20	0	80	0.72
24464487--24464524	17	2.2	18	85	4	51	0	18	0	81	0.69
24465911--24465998	40	2.1	42	91	4	144	39	2	12	45	1.55
24467031--24467087	12	4.7	12	77	18	64	35	0	0	64	0.93
24467039--24467085	22	2.0	22	92	8	76	38	0	0	61	0.96
24467037--24467085	10	4.7	10	78	9	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24470148--24470217	28	2.4	28	83	9	79	55	2	7	34	1.42
24471613--24471970	179	2.0	179	93	0	608	35	11	12	40	1.79
24472209--24472308	44	2.2	44	89	5	146	24	7	8	61	1.49
24473030--24473068	8	4.9	8	80	0	51	0	33	0	66	0.92
24473622--24473675	28	1.9	29	81	7	67	72	14	1	11	1.21
24476460--24476498	20	2.0	20	89	0	60	58	10	10	20	1.59
24476470--24476509	20	2.0	20	85	0	53	57	7	10	25	1.57
24477553--24477655	30	3.3	30	78	9	109	56	1	5	35	1.35
24480911--24480935	4	6.2	4	100	0	50	24	24	0	52	1.48
24483971--24484070	50	2.0	50	96	0	182	34	23	5	38	1.76
24492510--24492552	17	2.4	18	88	7	61	74	6	0	18	1.04
24492510--24492553	18	2.4	19	81	11	56	75	6	0	18	1.02
24494862--24495113	65	3.9	65	74	6	208	35	11	9	43	1.73
24494864--24495113	131	1.9	128	83	6	324	35	12	9	43	1.74
24502768--24502836	29	2.5	26	81	11	84	60	0	2	36	1.11
24511233--24511268	18	2.0	18	88	0	54	58	11	27	2	1.46
24516738--24516762	13	1.9	13	100	0	50	48	4	0	48	1.20
24520040--24520069	13	2.3	13	94	0	51	23	0	3	73	0.98
24521258--24521473	101	2.1	103	89	5	328	32	12	14	39	1.84
24521763--24521990	115	2.0	115	95	0	413	42	10	7	39	1.68
24529309--24529345	2	18.5	2	100	0	74	48	0	0	51	1.00
24531186--24531247	14	4.5	13	76	8	61	69	0	3	27	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24538348--24538422	39	1.9	39	81	2	89	40	8	14	37	1.76
24538974--24539033	27	2.2	27	78	0	66	20	23	31	25	1.98
24540378--24540419	15	3.0	15	83	13	54	35	0	0	64	0.94
24540357--24540422	22	2.8	23	73	13	64	33	0	1	65	1.02
24540401--24540434	16	2.2	15	94	5	59	29	0	0	70	0.87
24542348--24542400	17	3.1	16	77	20	54	26	0	3	69	1.05
24543416--24543451	18	2.0	19	89	10	58	22	0	0	77	0.76
24543891--24543935	13	3.4	13	82	14	56	82	8	0	8	0.85
24543892--24543930	16	2.5	16	87	4	53	84	7	0	7	0.77
24543890--24543930	13	2.9	14	85	14	57	82	7	0	9	0.83
24545050--24545113	30	2.1	29	86	11	85	46	25	0	28	1.53
24545057--24545121	30	2.2	30	81	10	80	44	29	0	26	1.54
24545104--24545148	20	2.2	20	85	11	65	53	33	0	13	1.40
24545109--24545396	60	4.8	60	73	12	195	47	30	1	20	1.61
24545108--24545396	90	3.2	90	82	4	311	47	30	1	20	1.61
24545109--24545411	30	10.1	31	75	11	172	46	29	1	21	1.62
24548040--24548154	59	1.9	59	91	0	185	34	14	13	37	1.85
24551191--24551241	26	2.0	26	84	7	68	21	25	27	25	1.99
24552384--24552457	24	3.2	23	71	16	71	75	2	10	10	1.14
24558516--24558961	152	2.9	153	95	0	804	37	17	14	30	1.90
24558996--24559027	12	2.7	12	100	0	64	81	6	0	12	0.87
24559277--24559322	20	2.3	20	84	0	56	17	21	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24559339--24559381	19	2.2	20	95	4	79	4	25	32	37	1.77
24559267--24559383	61	1.9	63	82	7	150	17	21	29	31	1.96
24559346--24559389	19	2.3	19	84	4	52	11	22	34	31	1.90
24559792--24559825	11	2.9	12	86	8	52	79	0	0	20	0.73
24560059--24560083	13	1.9	13	100	0	50	88	0	0	12	0.53
24560118--24560163	20	2.3	20	84	0	65	19	30	32	17	1.95
24560292--24560918	42	15.1	42	90	4	906	37	22	17	23	1.94
24562088--24562141	7	7.9	7	76	17	51	3	16	0	79	0.87
24562108--24562145	17	2.2	17	90	0	58	0	18	0	81	0.69
24565830--24566275	152	2.9	153	95	0	804	37	17	14	30	1.90
24566277--24566346	16	4.4	16	77	12	58	80	7	2	10	1.01
24566682--24566727	20	2.3	20	84	0	56	17	21	28	32	1.96
24566744--24566786	19	2.2	20	95	4	79	4	25	32	37	1.77
24566672--24566788	61	1.9	63	82	7	150	17	21	29	31	1.96
24566751--24566794	19	2.3	19	84	4	52	11	22	34	31	1.90
24567196--24567227	11	2.8	12	86	13	50	81	0	0	18	0.70
24567399--24567435	14	2.8	14	88	8	51	51	5	0	43	1.24
24567344--24567449	44	2.4	46	75	17	109	58	5	0	34	1.28
24567466--24567500	7	5.1	7	93	6	63	85	0	0	14	0.59
24567465--24567498	13	2.4	15	85	14	54	88	0	0	11	0.52
24567532--24567577	20	2.3	20	84	0	65	19	30	32	17	1.95
24572185--24573061	178	4.9	178	78	3	730	19	19	14	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24572199--24573052	267	3.2	268	78	4	719	20	20	13	45	1.84
24572185--24573116	89	10.5	89	78	4	594	19	20	14	46	1.84
24573511--24573578	26	2.6	26	75	13	77	14	23	26	35	1.94
24573640--24573668	13	2.1	14	93	6	51	24	0	0	75	0.80
24573640--24573678	19	2.1	18	85	4	51	17	2	0	79	0.84
24573652--24573697	23	2.0	22	83	4	56	10	8	0	80	0.91
24579119--24579143	1	25.0	1	100	0	50	100	0	0	0	0.00
24580123--24580151	14	2.0	15	93	6	51	55	0	0	44	0.99
24580332--24580381	25	2.0	24	84	3	64	18	28	12	42	1.85
24582031--24582095	27	2.4	27	84	5	87	18	21	33	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133