genome.fa.s645.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  93  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18174078--18174127	22	2.3	22	80	13	59	32	0	2	66	1.03
18173234--18174448	619	2.0	604	86	5	1672	40	3	8	47	1.51
18185463--18185524	31	2.0	31	87	6	90	54	3	27	14	1.55
18191766--18191797	5	6.4	5	96	0	55	3	0	53	43	1.16
18192712--18192742	16	1.9	16	100	0	62	38	0	0	61	0.96
18192727--18192781	23	2.4	24	76	11	62	47	0	0	52	1.00
18192751--18192799	9	5.6	9	79	13	57	51	0	0	48	1.00
18192763--18192843	16	5.0	15	72	19	65	51	0	0	48	1.00
18192786--18192859	19	4.1	20	72	21	65	54	0	1	44	1.08
18192793--18192878	15	5.5	15	72	13	57	54	0	1	44	1.07
18192886--18193317	15	29.9	15	69	23	197	41	0	2	54	1.20
18192894--18193205	11	27.5	11	68	21	134	42	0	2	53	1.19
18192887--18193332	44	10.2	42	68	20	163	42	0	2	54	1.21
18192939--18193274	18	19.4	18	68	23	136	41	0	2	55	1.20
18192886--18193161	85	3.2	83	79	14	237	42	0	2	53	1.20
18192903--18193313	47	9.0	45	68	24	156	42	0	2	54	1.21
18193117--18193239	10	13.3	9	68	21	60	40	0	0	58	1.04
18193109--18193272	20	7.9	19	68	20	73	39	0	1	57	1.14
18192905--18193317	76	5.4	75	69	20	218	41	0	2	54	1.21
18192887--18193312	18	23.2	18	65	26	91	42	0	2	54	1.20
18193423--18193474	22	2.4	21	75	9	50	28	7	3	59	1.43
18194068--18194139	16	4.4	16	73	16	51	31	2	5	59	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18194131--18194179	23	2.1	23	81	7	55	40	4	0	55	1.19
18197144--18197228	29	2.9	29	73	15	75	37	23	11	27	1.90
18198896--18198949	7	7.6	7	78	17	58	66	0	3	29	1.09
18202875--18202915	14	3.0	13	92	3	64	24	21	2	51	1.60
18208312--18208359	20	2.3	20	85	3	60	43	0	10	45	1.38
18209273--18209319	19	2.5	19	79	6	60	48	0	0	51	1.00
18214218--18214802	298	2.0	300	93	1	1005	30	15	17	36	1.91
18215010--18215057	24	2.0	24	91	0	78	41	8	31	18	1.80
18215329--18215904	258	2.2	257	91	0	929	27	13	25	34	1.93
18217660--18217739	29	2.9	27	73	17	74	71	0	28	0	0.87
18217671--18217739	29	2.4	29	78	9	79	73	0	26	0	0.83
18217694--18217745	26	2.0	26	85	14	72	73	0	25	1	0.94
18218526--18218599	36	2.0	37	94	2	132	29	17	14	37	1.90
18221266--18221309	10	4.5	10	85	5	63	63	2	2	31	1.19
18221266--18221309	9	4.7	9	83	8	52	63	2	2	31	1.19
18221265--18221308	19	2.3	19	85	14	72	61	2	4	31	1.28
18221289--18221382	35	2.6	35	80	11	111	60	1	5	32	1.26
18224460--18224494	3	11.7	3	100	0	70	68	0	0	31	0.90
18225731--18225765	17	2.1	17	88	0	52	85	2	0	11	0.69
18228117--18228161	3	15.0	3	100	0	90	33	0	0	66	0.92
18230728--18230768	21	2.0	21	85	0	55	34	7	4	53	1.50
18231269--18231395	65	2.0	65	90	4	204	52	2	2	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18231699--18231804	53	2.0	54	90	1	169	46	13	4	35	1.64
18240954--18241046	2	47.0	2	74	6	73	40	1	9	48	1.43
18242002--18242030	14	2.1	14	100	0	58	44	0	6	48	1.29
18242004--18242039	14	2.5	14	90	4	54	50	0	5	44	1.25
18243016--18243045	2	15.0	2	100	0	60	50	0	0	50	1.00
18243648--18243808	81	2.0	81	92	0	268	37	13	6	42	1.70
18243932--18243964	15	2.3	15	89	5	50	69	3	0	27	1.03
18244111--18244161	16	3.2	16	81	8	68	43	0	5	50	1.26
18244111--18244159	17	2.9	17	87	3	73	44	0	6	48	1.27
18244138--18244183	22	2.1	22	83	0	56	41	2	8	47	1.46
18245010--18245075	28	2.3	29	82	7	82	48	4	6	40	1.48
18247113--18247150	11	3.5	11	82	7	51	68	0	5	26	1.11
18247417--18247495	32	2.5	32	81	4	99	48	6	16	29	1.71
18248566--18248596	14	2.2	14	94	0	53	77	0	0	22	0.77
18248942--18249002	10	5.9	10	84	3	77	63	27	3	4	1.30
18249442--18249599	3	52.7	3	76	9	108	56	4	5	34	1.41
18249531--18249580	13	3.9	12	81	5	55	50	8	2	40	1.43
18249744--18250077	120	2.8	120	81	3	370	44	14	22	18	1.86
18249993--18250190	109	1.8	109	82	0	252	44	16	22	16	1.86
18260511--18260595	42	2.0	42	86	0	116	60	5	15	18	1.55
18261500--18261530	14	2.2	14	94	0	53	77	0	0	22	0.77
18262440--18262553	3	37.7	3	72	11	81	57	5	2	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18262448--18262538	13	6.7	13	78	12	85	56	4	2	37	1.32
18262620--18262707	33	2.6	34	81	10	110	39	10	20	29	1.85
18262754--18262874	64	1.9	64	81	3	145	45	11	23	19	1.83
18262754--18263004	32	7.8	32	71	4	110	45	11	23	20	1.83
18262911--18263007	33	3.0	32	73	13	90	47	10	23	18	1.79
18263054--18263143	32	2.8	32	84	0	90	43	13	25	17	1.86
18263184--18263258	32	2.4	33	86	8	111	40	9	28	22	1.85
18263417--18263501	32	2.7	31	78	8	93	48	15	20	16	1.81
18263484--18263561	32	2.5	31	77	10	77	39	8	28	23	1.84
18263942--18264015	34	2.2	33	83	11	87	40	14	12	32	1.83
18267156--18267198	21	2.0	22	81	4	52	51	9	4	34	1.55
18269632--18269676	24	1.9	23	90	4	72	17	33	0	48	1.48
18269863--18269921	29	2.0	29	93	0	100	35	18	13	32	1.90
18271883--18271968	42	2.0	43	84	10	115	41	13	2	41	1.57
18275456--18275809	143	2.5	144	82	8	445	38	11	16	32	1.85
18279697--18279770	21	3.5	22	76	9	91	28	22	8	40	1.83
18279690--18279770	42	1.9	42	100	0	162	28	23	7	40	1.81
18280644--18280685	19	2.2	19	87	8	59	73	0	9	16	1.08
18281635--18281728	38	2.5	38	77	3	102	38	23	10	27	1.88
18281660--18281782	36	3.4	37	76	4	106	31	23	10	34	1.89
18283852--18283900	25	1.9	26	88	12	75	34	12	20	32	1.90
18284415--18284551	31	4.4	31	76	7	116	36	16	23	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18284415--18284549	62	2.2	62	81	2	146	36	16	23	23	1.94
18284508--18284596	31	2.9	31	79	3	90	38	23	14	23	1.92
18284596--18284703	32	3.5	32	74	12	100	34	16	20	28	1.94
18284691--18284773	33	2.5	33	86	7	105	33	18	22	25	1.96
18284880--18284937	29	2.0	29	82	0	71	55	1	22	20	1.53
18285373--18285734	48	7.5	47	81	6	341	30	14	14	41	1.85
18285763--18285809	12	3.8	12	83	8	58	87	6	6	0	0.68
18285763--18285797	16	2.4	14	86	13	52	88	8	2	0	0.61
18286380--18286638	142	1.8	143	80	8	312	29	11	16	42	1.83
18288168--18288204	19	1.9	19	88	0	56	40	43	0	16	1.48
18289143--18289167	2	12.5	2	100	0	50	52	0	0	48	1.00
18289580--18289618	8	4.8	8	85	14	53	25	0	0	74	0.82
18289571--18289641	18	3.8	19	78	17	69	26	2	0	70	1.01
18289980--18290028	23	2.2	22	85	10	64	20	2	28	48	1.60
18290501--18290554	6	9.2	6	80	8	58	14	7	0	77	0.97
18290507--18290554	18	2.7	18	87	12	64	14	8	0	77	0.99
18302292--18302410	55	2.2	55	84	3	150	24	24	14	36	1.92
18302768--18302861	3	31.3	3	83	8	66	20	2	10	67	1.32
18302779--18302861	6	13.8	6	88	5	78	19	1	12	67	1.29
18303184--18303229	23	2.0	23	83	8	58	19	2	28	50	1.60
18307488--18307535	25	1.9	25	91	0	78	33	18	10	37	1.85
18309434--18309506	33	2.2	33	97	0	137	26	5	8	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18317621--18317653	15	2.1	16	88	5	50	48	0	9	42	1.35
18325631--18325673	22	2.0	21	86	4	59	39	2	2	55	1.25
18327652--18327687	17	2.1	17	89	0	54	38	8	5	47	1.57
18327730--18327772	23	1.9	23	85	4	61	44	6	4	44	1.52
18329939--18330034	31	3.1	31	82	4	97	22	6	15	55	1.63
18330702--18330730	12	2.5	12	94	5	51	24	0	6	68	1.13
18330701--18330745	18	2.5	18	79	13	56	26	0	8	64	1.23
18343103--18343175	38	1.9	38	94	0	128	26	8	4	61	1.42
18347604--18347720	43	2.7	42	84	3	128	33	10	10	46	1.72
18347648--18347825	43	4.1	44	78	10	154	26	11	15	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133