genome.fa.s645.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  72  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14239649--14239730	23	3.7	22	73	12	69	47	20	1	30	1.58
14240776--14240815	20	2.0	21	90	5	64	2	15	0	82	0.77
14241074--14241141	9	7.6	9	73	16	61	1	13	1	83	0.78
14241074--14241136	22	2.8	21	84	15	74	1	14	1	82	0.82
14241075--14241121	23	2.3	19	85	14	58	0	17	0	82	0.66
14241075--14241139	17	3.9	16	78	11	58	1	13	1	83	0.80
14241084--14241141	28	2.1	27	87	6	82	1	12	1	84	0.78
14241098--14241160	28	2.2	29	82	2	83	6	12	3	77	1.07
14247799--14247824	10	2.6	10	100	0	52	19	0	0	80	0.71
14249562--14249678	61	1.9	61	91	0	189	27	19	21	31	1.97
14254199--14254263	6	10.8	6	78	6	69	30	6	3	60	1.37
14254238--14254276	18	2.2	18	85	0	51	20	2	12	64	1.40
14255872--14255914	3	14.3	3	100	0	86	32	0	0	67	0.91
14256048--14256101	18	2.9	19	94	5	101	33	3	9	53	1.50
14256116--14256216	20	4.7	20	77	17	103	36	5	10	46	1.63
14256131--14256287	47	3.5	44	78	7	120	33	5	10	50	1.59
14256183--14256287	45	2.4	45	82	7	117	28	4	12	54	1.58
14257284--14257362	40	2.0	40	88	9	119	26	11	6	55	1.59
14257410--14257449	20	2.0	20	85	9	55	27	22	7	42	1.80
14257574--14258097	139	3.8	139	78	7	502	27	11	11	49	1.73
14258522--14258550	14	2.0	15	93	6	51	34	13	13	37	1.85
14260560--14260723	70	2.3	70	82	2	184	28	12	15	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14261428--14261521	45	2.1	44	82	5	109	40	9	9	40	1.70
14261485--14261545	22	2.8	21	80	9	77	40	4	14	39	1.68
14261618--14261686	22	3.2	22	77	8	70	39	5	13	42	1.68
14261735--14261805	18	3.9	18	76	7	72	28	15	14	42	1.86
14262186--14262321	38	3.6	38	78	12	109	40	10	11	37	1.76
14262228--14262339	38	2.9	38	76	15	108	40	8	14	36	1.77
14262189--14262345	38	4.1	37	73	17	106	40	10	12	36	1.77
14262357--14262481	38	3.3	38	83	4	146	40	8	9	41	1.69
14262376--14262481	37	2.8	38	84	5	126	40	9	9	40	1.70
14262728--14262814	6	14.0	6	78	7	93	29	2	5	62	1.31
14264555--14264613	19	3.1	19	82	2	73	33	3	6	55	1.43
14264623--14264697	27	2.8	28	90	8	120	41	2	6	49	1.43
14264706--14264803	35	3.0	33	75	11	94	25	5	9	60	1.48
14266358--14266392	5	6.6	5	87	12	52	40	0	0	60	0.97
14269032--14269100	24	3.2	24	62	30	64	23	17	28	30	1.97
14269031--14269122	40	2.3	40	100	0	184	22	16	28	32	1.96
14270606--14270700	45	2.1	45	86	0	127	42	10	18	28	1.84
14270852--14270942	45	2.0	45	84	0	119	45	6	31	16	1.73
14273893--14273946	26	2.0	27	96	3	101	18	9	7	64	1.45
14278590--14278645	27	2.0	28	89	3	87	50	26	10	12	1.73
14280381--14280433	3	17.7	3	92	0	88	67	0	32	0	0.91
14280513--14280538	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14280387--14280613	126	1.8	126	85	5	325	59	3	15	20	1.52
14280711--14280756	13	3.4	14	85	8	60	58	15	8	17	1.61
14280701--14280774	27	2.7	26	77	6	67	55	20	5	18	1.62
14280701--14280743	13	3.2	13	87	6	59	55	18	6	18	1.64
14280965--14281016	20	2.6	20	90	6	79	69	1	5	23	1.20
14282015--14282128	37	3.2	37	69	18	123	42	11	9	36	1.74
14282051--14282159	33	3.2	33	69	19	105	41	9	9	40	1.69
14282015--14282159	70	2.1	70	100	0	290	42	10	9	37	1.72
14284333--14284389	22	2.5	23	81	15	66	3	15	1	78	0.96
14284321--14284400	32	2.6	32	80	7	76	3	22	1	72	1.08
14284944--14284985	20	2.2	18	87	8	57	64	7	2	26	1.32
14286179--14286368	14	14.4	14	70	10	105	18	1	34	45	1.60
14286168--14286368	7	30.3	7	70	11	93	19	1	33	44	1.62
14286178--14286330	21	7.7	20	75	9	111	19	1	32	46	1.61
14286168--14286293	48	2.7	46	85	3	146	20	3	31	44	1.67
14286172--14286368	19	9.9	20	75	12	122	19	2	34	44	1.62
14287735--14288173	144	3.1	144	81	8	463	41	12	12	33	1.82
14289345--14289399	27	2.0	27	86	6	76	27	7	9	56	1.57
14289663--14289720	20	3.1	20	83	9	70	36	17	1	44	1.59
14289666--14289778	18	6.2	18	74	9	86	31	16	7	43	1.77
14289687--14289779	36	2.6	37	80	13	113	30	16	9	44	1.79
14290322--14290374	26	2.0	27	88	3	81	75	5	3	15	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14297183--14297240	31	1.9	30	85	3	80	53	5	6	34	1.50
14297183--14297288	30	3.5	29	78	6	86	52	3	4	38	1.40
14300022--14300070	22	2.3	22	80	13	57	48	4	0	46	1.20
14300023--14300065	22	1.9	23	85	4	61	48	4	0	46	1.22
14300705--14300737	11	2.8	12	86	13	50	63	6	3	27	1.32
14300817--14300864	20	2.4	21	80	13	57	64	0	2	33	1.05
14300942--14300999	18	3.1	19	82	7	66	53	1	6	37	1.38
14301275--14301319	16	2.6	17	86	6	56	33	4	2	60	1.29
14301351--14301391	21	2.0	21	85	0	55	26	0	9	63	1.25
14301331--14301445	58	2.0	57	83	11	146	28	3	6	60	1.39
14310736--14310796	21	3.0	21	76	4	54	50	0	0	49	1.00
14310761--14310800	10	4.0	10	93	6	64	52	0	0	47	1.00
14312062--14312120	31	1.9	30	86	10	84	47	1	11	38	1.50
14312283--14312334	27	1.9	27	84	0	68	50	0	1	48	1.12
14312407--14312478	17	4.2	16	75	8	54	65	4	4	26	1.29
14312408--14312473	16	3.9	16	76	9	51	65	4	4	25	1.31
14312406--14312478	18	4.3	16	72	16	58	65	4	4	26	1.28
14312837--14312898	20	3.1	20	75	13	65	40	17	16	25	1.90
14312997--14313064	29	2.3	29	92	0	118	47	7	5	39	1.56
14316362--14316413	18	3.1	17	72	16	54	55	0	1	42	1.10
14321792--14321843	26	2.0	26	92	0	86	17	36	1	44	1.60
14321799--14321837	13	3.0	13	76	0	51	17	38	0	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14326950--14327015	32	2.1	32	85	0	87	30	9	21	39	1.84
14330730--14330775	23	2.0	23	95	0	83	34	19	13	32	1.90
14330919--14330947	10	2.9	10	100	0	58	31	20	10	37	1.86
14331737--14331774	5	7.4	5	91	8	51	76	0	0	23	0.79
14331739--14331778	3	14.0	3	80	19	50	72	0	0	27	0.85
14332303--14333202	236	3.8	234	81	5	994	33	9	12	45	1.74
14336996--14337770	204	3.8	198	79	5	718	34	11	10	42	1.77
14344203--14344301	51	1.9	51	89	4	155	52	9	17	21	1.71
14345337--14345402	26	2.6	26	75	2	71	77	9	7	6	1.13
14345724--14345813	23	3.9	23	73	16	71	76	2	16	4	1.05
14345747--14345815	17	3.8	17	72	22	59	76	1	18	2	0.98
14345752--14345813	10	6.6	9	75	12	54	77	1	17	3	0.98
14346730--14346847	34	3.6	34	78	10	104	38	15	16	29	1.89
14346806--14346877	30	2.4	30	88	0	99	36	13	16	33	1.89
14346866--14346977	33	3.4	32	86	4	145	33	13	18	33	1.90
14346996--14347062	29	2.3	29	84	0	80	28	16	22	32	1.95
14347183--14347339	31	4.9	31	72	9	109	33	18	15	32	1.93
14347159--14347405	98	2.5	95	80	8	266	32	17	16	33	1.92
14347349--14347544	66	2.9	64	76	11	198	34	16	18	31	1.93
14347348--14347542	33	5.8	33	78	13	161	34	15	18	31	1.92
14347348--14347529	101	1.8	99	86	9	262	34	15	18	30	1.93
14347764--14347853	35	2.5	35	83	7	110	15	12	17	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14350180--14350247	34	2.0	35	85	2	93	42	22	10	25	1.84
14356519--14356565	24	2.0	24	86	0	67	36	14	21	27	1.93
14362331--14362355	13	1.9	13	100	0	50	0	16	0	84	0.63
14365275--14365309	16	2.2	16	94	0	61	20	25	20	34	1.96
14365270--14365317	16	2.7	18	78	18	55	22	25	18	33	1.97
14365922--14365971	9	5.6	9	80	0	55	48	22	4	26	1.68
14365917--14365971	18	3.1	18	83	0	74	49	21	3	25	1.66
14376158--14376222	31	2.1	31	82	8	78	20	7	9	63	1.49
14382149--14383134	491	2.0	492	98	0	1902	27	11	13	47	1.76
14384224--14384270	11	4.2	11	91	8	69	89	0	8	2	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133