genome.fa.s645.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  66  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13293054--13293191	67	2.1	67	94	0	240	36	14	7	42	1.73
13293121--13295916	181	15.6	181	75	7	1899	42	10	8	39	1.68
13292739--13293550	426	1.9	429	82	6	1011	40	11	7	40	1.69
13293121--13303632	717	14.9	709	70	13	3604	41	9	8	40	1.68
13295446--13295752	169	1.8	169	80	2	375	43	10	7	39	1.66
13295804--13296068	142	1.9	143	84	2	363	41	9	7	40	1.67
13295815--13296106	142	2.0	143	80	3	329	41	10	8	39	1.70
13296438--13296489	18	2.9	18	72	13	54	40	11	5	42	1.65
13296282--13297709	538	2.6	536	79	7	1334	41	9	7	40	1.67
13296116--13297706	359	4.4	359	74	8	1170	41	9	7	40	1.67
13296116--13297709	180	8.9	178	75	8	1089	41	9	7	40	1.67
13297557--13297822	144	1.8	146	85	1	374	45	8	6	39	1.61
13297694--13300472	180	15.7	178	73	10	1734	41	10	8	39	1.69
13297694--13298359	356	1.9	358	80	6	794	42	9	8	39	1.67
13298415--13300479	356	5.8	351	73	10	961	41	10	8	39	1.70
13300352--13300619	147	1.8	146	87	4	396	44	9	7	38	1.65
13300162--13300811	327	2.0	326	79	6	717	43	9	7	39	1.66
13300547--13303636	180	17.3	179	72	11	1272	42	9	8	40	1.67
13301702--13301734	18	1.9	17	88	11	50	42	6	3	48	1.43
13300502--13303626	726	4.4	712	74	10	1912	42	9	8	40	1.67
13303601--13303709	50	2.2	50	81	4	123	55	6	2	34	1.40
13303423--13303867	231	1.9	228	83	4	563	44	8	7	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13304243--13307350	181	17.4	179	74	9	2135	40	8	9	41	1.68
13304243--13312089	543	14.7	540	74	9	4603	40	8	9	41	1.69
13306268--13306580	168	1.9	167	85	3	432	40	8	7	42	1.66
13307361--13312085	181	26.6	179	73	11	2209	39	8	10	41	1.69
13309675--13310005	175	1.9	176	81	5	400	40	8	9	41	1.69
13309657--13312089	180	13.7	182	70	13	982	39	8	9	41	1.68
13310503--13312089	356	4.5	356	74	9	854	39	8	9	41	1.68
13312349--13312400	26	1.9	27	81	14	63	38	11	5	44	1.65
13312100--13313360	181	7.0	180	77	6	1084	39	8	9	42	1.67
13312116--13313361	362	3.4	359	79	7	1250	39	8	8	42	1.67
13312114--13313360	542	2.3	542	79	5	1320	40	8	8	42	1.67
13313486--13314114	180	3.5	179	80	5	637	38	7	9	44	1.66
13314144--13316166	180	11.2	181	75	6	1150	39	7	10	42	1.67
13314840--13315998	363	3.2	348	77	10	896	39	7	10	42	1.68
13314956--13316166	538	2.3	535	80	3	1299	38	7	10	42	1.68
13316041--13316298	141	1.8	141	81	5	324	41	8	10	39	1.70
13315667--13316658	497	2.0	495	80	7	1107	38	7	11	41	1.71
13316976--13317028	18	3.0	18	71	15	56	45	13	11	30	1.78
13316180--13317335	180	6.5	180	73	10	790	40	8	10	40	1.71
13316533--13317335	179	4.5	179	74	11	454	40	8	10	40	1.70
13317343--13318398	176	5.9	180	76	7	884	40	9	10	40	1.71
13318305--13318504	98	2.0	98	83	1	249	46	8	10	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13318733--13319513	356	2.2	357	79	8	836	42	7	7	41	1.63
13318406--13321056	181	14.6	179	70	12	1082	41	8	9	41	1.68
13319380--13319412	18	1.9	17	88	11	50	48	6	6	39	1.53
13319309--13319724	211	2.0	212	89	2	640	40	8	9	41	1.67
13320709--13321033	169	1.9	169	86	2	456	40	7	8	42	1.65
13319812--13321132	350	3.7	348	74	9	1012	40	8	9	41	1.68
13321401--13321711	158	2.0	156	85	5	421	42	8	8	41	1.64
13322113--13322453	181	1.9	177	80	4	389	39	7	10	41	1.69
13321945--13322849	177	5.2	176	75	8	585	40	8	10	40	1.70
13322437--13322753	163	2.0	162	82	1	384	40	8	10	40	1.70
13323031--13325873	536	5.3	534	77	8	2088	40	8	9	41	1.68
13322946--13325873	180	16.3	179	75	7	2126	40	8	9	41	1.68
13326020--13337707	181	64.7	180	72	10	3529	40	8	9	41	1.68
13327643--13328135	180	2.9	169	77	8	399	39	7	9	42	1.67
13327810--13328296	180	2.7	180	75	9	418	41	8	8	41	1.66
13328249--13328527	91	3.1	91	63	14	223	45	7	10	36	1.67
13329200--13330046	180	4.7	179	77	8	692	40	8	8	41	1.66
13329925--13330191	145	1.8	145	83	3	349	39	7	8	44	1.64
13330303--13337710	181	41.3	179	76	8	4532	40	8	9	41	1.69
13330028--13337710	538	14.3	535	75	8	4850	40	8	9	41	1.68
13336327--13336810	167	2.8	168	89	5	666	41	9	7	41	1.66
13338144--13338194	16	3.3	16	74	15	54	78	1	3	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13338353--13341396	181	16.8	180	75	8	2132	42	10	8	39	1.68
13339863--13341230	363	3.8	361	75	8	1027	42	10	8	38	1.69
13341801--13343584	180	9.9	179	76	8	1249	40	8	9	41	1.68
13341464--13347126	542	10.6	536	73	10	2766	40	8	9	41	1.67
13341456--13343584	360	5.9	359	75	8	1455	40	8	9	41	1.67
13343588--13347452	181	21.6	179	73	11	1993	40	8	9	42	1.68
13344075--13344107	18	1.9	17	88	11	50	48	12	6	33	1.65
13343592--13347433	531	7.1	527	73	11	1661	40	8	9	41	1.68
13343586--13347126	712	4.9	711	74	11	1908	40	8	9	41	1.67
13347505--13348639	177	6.3	175	71	11	565	40	7	10	41	1.67
13347645--13348639	551	1.8	544	81	6	1231	40	7	10	42	1.67
13348658--13349469	180	4.5	180	77	8	520	39	8	9	42	1.68
13349469--13349513	21	2.1	22	87	4	65	22	8	6	62	1.48
13349543--13350596	179	5.9	177	74	8	639	41	8	8	41	1.66
13350625--13352666	181	11.4	180	72	7	1121	40	8	9	41	1.68
13351706--13352438	361	2.0	362	79	4	773	40	8	9	42	1.68
13352526--13352820	154	1.9	154	80	4	337	36	6	10	45	1.65
13352923--13353983	539	2.0	539	83	3	1355	38	8	10	42	1.71
13354011--13354555	179	3.1	176	77	11	502	41	8	8	40	1.68
13354556--13354594	19	1.9	20	85	15	53	43	10	15	30	1.80
13354415--13354710	156	1.9	154	79	10	336	42	9	8	39	1.68
13354216--13354889	335	2.0	334	82	4	824	41	8	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13354561--13355008	179	2.5	180	80	4	514	42	9	8	39	1.69
13355365--13357741	181	13.2	180	77	7	1605	39	8	10	41	1.69
13355365--13357730	360	6.6	358	76	7	1764	39	8	10	41	1.69
13357655--13357828	87	2.0	87	89	2	269	40	4	7	47	1.52
13357758--13362193	181	24.6	181	74	6	2995	39	8	10	41	1.69
13357742--13404952	900	52.8	889	69	13	7500	40	8	9	41	1.68
13357771--13362158	360	12.2	358	75	8	2943	39	8	9	41	1.69
13362098--13362311	119	1.8	116	82	7	270	37	4	8	49	1.53
13362215--13364205	180	11.2	179	74	9	1355	39	7	10	42	1.68
13362229--13364202	356	5.5	352	75	9	929	39	7	10	42	1.68
13362237--13364882	180	15.0	172	71	12	813	39	7	10	42	1.68
13362411--13364211	531	3.4	527	77	10	1291	39	8	10	41	1.68
13362231--13364205	357	5.5	351	73	11	975	39	7	10	42	1.68
13364053--13364362	158	2.0	159	84	1	408	37	9	9	43	1.69
13364239--13365370	181	6.3	179	73	9	618	39	8	10	42	1.68
13365479--13367528	181	11.4	181	76	7	1495	40	8	10	40	1.69
13367379--13367683	156	2.0	156	84	2	407	41	7	9	41	1.66
13367535--13381327	181	76.9	178	72	10	5612	40	8	9	41	1.69
13367948--13369001	180	5.9	177	78	6	572	41	8	9	40	1.68
13369184--13381327	181	68.1	180	73	8	6853	40	8	9	41	1.69
13371886--13371924	20	2.0	20	85	9	55	35	5	7	51	1.53
13369188--13411001	538	77.8	533	69	13	8987	40	8	9	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13374389--13374719	171	1.9	170	84	5	436	42	8	8	40	1.66
13377037--13381286	180	23.6	175	71	13	1218	40	8	9	41	1.68
13377040--13378160	176	6.3	179	75	9	710	40	7	9	42	1.66
13377992--13378368	201	1.9	201	81	6	444	41	7	9	41	1.66
13379540--13379855	169	1.9	169	83	5	415	41	8	8	40	1.67
13377130--13381303	540	7.7	538	74	10	2036	40	8	9	41	1.68
13381410--13381718	165	1.9	167	79	8	360	39	6	10	43	1.64
13381584--13382613	182	5.7	181	75	7	790	40	9	9	41	1.68
13382494--13382762	145	1.9	145	84	3	364	40	9	7	42	1.66
13383304--13383336	18	1.9	17	88	11	50	48	6	6	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133