genome.fa.s645.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  28  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6696661--6696762	51	2.0	51	86	0	141	31	16	10	41	1.83
6702827--6703148	159	2.0	159	90	2	509	44	17	7	31	1.76
6703087--6703144	20	2.8	20	75	10	64	56	15	5	22	1.58
6703215--6703288	20	3.7	20	85	0	103	54	10	5	29	1.57
6703223--6703276	24	2.2	24	77	6	56	59	7	3	29	1.42
6703295--6703338	20	2.2	20	83	0	52	54	9	6	29	1.58
6703394--6703429	18	1.9	18	88	5	54	75	8	0	16	1.04
6705159--6705253	43	2.3	43	85	7	124	32	11	16	38	1.85
6705247--6705537	37	7.7	38	75	10	202	39	17	12	29	1.87
6705220--6705538	38	8.4	39	74	11	207	39	16	11	31	1.85
6705258--6705464	39	5.3	40	74	11	135	41	16	11	30	1.83
6705547--6705730	48	3.8	48	83	1	217	38	16	12	32	1.86
6705547--6705730	96	1.9	96	84	2	244	38	16	12	32	1.86
6710711--6710834	62	2.0	62	88	0	185	33	12	22	30	1.92
6711098--6711162	12	5.5	12	72	22	57	55	15	6	23	1.62
6711096--6711162	23	2.9	22	80	12	73	56	14	5	22	1.60
6711142--6711211	20	3.5	20	76	3	70	52	10	4	32	1.54
6711134--6711288	51	3.1	51	77	14	155	50	11	5	32	1.62
6711184--6711241	30	1.9	31	89	3	91	46	12	5	36	1.63
6711189--6711279	29	3.1	29	77	6	85	48	10	6	34	1.64
6711249--6711309	20	3.1	20	75	13	63	49	9	4	36	1.58
6721135--6721228	43	2.2	44	84	1	118	37	12	11	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6723624--6723770	24	6.3	23	76	10	127	42	6	13	37	1.71
6723623--6723772	47	3.2	47	77	6	169	42	7	14	36	1.73
6725874--6725931	25	2.3	25	87	0	80	60	13	5	20	1.53
6727062--6727642	78	7.5	79	78	7	537	36	12	9	41	1.76
6730820--6730865	22	2.2	21	78	14	51	41	6	4	47	1.49
6735680--6735705	3	8.7	3	100	0	52	69	0	0	30	0.89
6739280--6739324	23	2.0	23	86	8	65	11	4	2	82	0.91
6739276--6739323	16	3.0	16	75	9	53	12	2	2	83	0.83
6746736--6746789	23	2.3	23	78	12	65	53	0	1	44	1.11
6749027--6749051	13	1.9	13	100	0	50	52	0	0	48	1.00
6751702--6751734	15	2.2	16	89	10	52	63	0	6	30	1.18
6752524--6752555	2	16.0	2	100	0	64	50	0	0	50	1.00
6754625--6754656	13	2.5	13	94	0	55	90	3	0	6	0.53
6755051--6755102	27	1.9	27	88	0	77	32	7	0	59	1.26
6755480--6755544	22	2.8	22	81	11	69	80	6	6	7	1.04
6755587--6755632	13	3.5	13	82	11	58	58	2	0	39	1.10
6755579--6755627	21	2.4	21	79	3	55	55	2	0	42	1.11
6755593--6755661	21	3.0	22	79	14	61	68	1	2	27	1.13
6755624--6755684	28	2.1	30	84	6	81	78	1	8	11	1.02
6755629--6755695	21	3.2	20	78	16	55	80	1	10	7	0.96
6755629--6755675	21	2.2	21	85	7	60	80	2	6	10	0.96
6755645--6755690	15	3.0	16	75	9	51	80	2	13	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756051--6756084	16	2.1	16	89	10	52	82	2	2	11	0.89
6756462--6756495	17	1.9	18	94	5	61	58	0	0	41	0.98
6758849--6758903	19	2.8	19	83	10	67	63	0	5	30	1.17
6758949--6758988	19	2.1	19	85	0	53	75	2	5	17	1.10
6759927--6759993	34	2.0	34	96	0	125	13	20	17	47	1.81
6760118--6760149	2	16.0	2	100	0	64	50	0	0	50	1.00
6760361--6760386	2	13.0	2	100	0	52	50	0	0	50	1.00
6768144--6768200	26	2.2	26	84	6	71	42	22	7	28	1.80
6768528--6768632	36	2.9	35	80	10	106	19	16	11	53	1.72
6768697--6768936	71	3.4	70	77	9	211	16	17	15	51	1.77
6768722--6768855	70	1.9	71	84	3	182	16	18	14	50	1.79
6768718--6768936	105	2.1	106	82	5	257	15	16	16	50	1.78
6768978--6769046	36	1.9	36	82	5	86	18	17	13	50	1.77
6769018--6769115	36	2.7	36	78	6	108	13	17	15	54	1.72
6769145--6769219	36	2.1	36	85	5	98	13	16	17	53	1.73
6769039--6769200	85	1.9	86	80	11	190	12	18	18	50	1.77
6769378--6769477	36	2.8	35	83	6	112	16	13	15	56	1.68
6769244--6769480	107	2.2	106	75	5	235	16	14	13	55	1.69
6769727--6769926	36	5.6	36	68	10	131	15	20	16	48	1.82
6769710--6769931	71	3.1	70	76	5	198	15	19	15	49	1.80
6769740--6769916	72	2.5	71	82	2	203	15	19	15	48	1.81
6769977--6770068	35	2.8	35	85	8	113	16	8	19	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6769946--6770068	35	3.7	34	78	12	112	16	12	18	52	1.73
6769992--6770176	36	5.2	35	74	12	135	17	11	14	55	1.68
6769992--6770184	71	2.7	71	77	13	191	18	12	14	54	1.70
6770257--6770352	34	2.8	35	75	10	99	12	13	15	58	1.64
6770374--6770452	35	2.3	35	86	4	115	16	17	12	53	1.73
6770620--6770687	35	1.9	35	81	3	82	16	17	14	51	1.77
6770657--6770766	35	3.2	33	80	5	112	11	14	18	55	1.69
6770621--6770805	36	5.3	36	77	6	139	15	16	15	52	1.75
6773547--6773924	196	1.9	200	80	5	446	37	10	5	46	1.61
6773889--6773934	19	2.4	18	79	10	56	23	0	0	76	0.79
6774288--6774335	20	2.4	20	75	0	51	50	12	18	18	1.78
6774974--6775106	40	3.3	39	82	5	142	41	21	14	22	1.89
6775554--6775621	25	2.7	25	93	2	109	33	10	14	41	1.80
6780699--6780835	53	2.6	52	82	7	145	27	10	9	52	1.67
6781198--6781258	31	2.0	31	90	6	97	31	4	0	63	1.15
6781217--6781266	25	2.0	26	88	11	77	34	4	0	62	1.14
6781654--6781691	20	1.9	20	88	0	58	57	18	13	10	1.63
6782363--6782403	3	13.7	3	94	0	73	65	2	0	31	1.05
6799420--6799460	16	2.6	16	82	17	59	78	0	14	7	0.96
6799421--6799464	10	4.3	10	80	5	52	81	0	11	6	0.86
6800274--6800339	13	4.7	14	74	12	64	27	21	10	40	1.86
6800287--6800339	13	3.9	13	80	9	70	26	22	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6800274--6800355	28	2.9	28	88	0	119	29	21	10	37	1.88
6800274--6800346	15	5.1	15	77	15	84	28	20	10	39	1.86
6801103--6801207	45	2.4	43	81	7	106	31	9	17	41	1.81
6801130--6801215	42	2.0	44	84	4	113	31	9	17	41	1.81
6801264--6801341	16	4.6	17	78	12	65	35	14	11	38	1.82
6801343--6801448	18	5.7	18	84	7	133	25	9	12	52	1.68
6801348--6801465	37	3.2	36	81	11	141	27	9	13	49	1.73
6801343--6801465	55	2.2	56	85	5	162	26	8	13	51	1.70
6801691--6801758	22	3.2	20	76	10	64	36	10	8	44	1.70
6802212--6802250	20	1.9	21	89	5	62	61	12	5	20	1.50
6807082--6807106	8	3.1	8	100	0	50	24	0	0	76	0.80
6807223--6807258	7	5.3	7	96	3	65	75	0	0	25	0.81
6807169--6807268	14	7.0	14	75	15	71	71	3	2	24	1.11
6814060--6814151	4	24.0	4	72	10	68	21	3	5	69	1.23
6819004--6819029	2	13.0	2	100	0	52	50	0	0	50	1.00
6824968--6825045	38	2.1	38	87	2	113	30	11	12	44	1.78
6825210--6825247	19	2.0	19	89	0	58	52	10	5	31	1.58
6825240--6825285	19	2.4	20	75	10	51	56	13	2	28	1.48
6825297--6825346	18	2.7	18	79	14	57	58	12	2	28	1.45
6825276--6825365	39	2.2	42	86	7	123	57	13	2	26	1.48
6825301--6825365	21	3.3	20	75	14	64	55	13	3	27	1.53
6825333--6825414	24	3.2	25	78	11	78	53	13	3	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6825355--6825418	28	2.3	27	83	8	74	54	10	3	31	1.51
6825350--6825447	24	3.9	25	80	15	89	52	13	4	30	1.59
6825601--6825642	17	2.7	15	85	10	57	80	16	0	2	0.81
6827197--6827234	18	2.1	18	85	9	51	36	7	15	39	1.77
6827730--6827812	42	1.9	44	85	4	116	33	16	14	34	1.90
6827781--6827825	18	2.5	18	92	0	72	37	13	13	35	1.84
6828537--6828602	24	2.8	24	88	0	96	30	4	12	53	1.58
6828557--6828622	20	3.1	20	74	16	60	31	4	9	54	1.52
6828583--6828648	32	2.1	32	100	0	132	31	6	9	53	1.57
6828623--6828715	31	3.1	31	83	9	104	29	6	10	53	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133