Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  130  of  133  ( 15876 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25512391--25512430
4
10.0
4
100
0
80
25
0
25
50
1.50
25521371--25521395
12
2.1
12
100
0
50
32
28
16
24
1.96
25526183--25526228
13
3.7
13
82
5
60
50
4
13
32
1.61
25526342--25526414
32
2.2
32
82
2
83
54
1
0
43
1.08
25526341--25526418
39
2.0
38
85
9
104
52
1
0
46
1.08
25527310--25527344
6
5.8
6
93
0
61
48
34
17
0
1.47
25534909--25534946
15
2.6
14
88
8
58
84
0
15
0
0.63
25536374--25536408
11
3.0
11
88
12
52
60
0
5
34
1.21
25538480--25538521
22
1.9
22
85
0
57
40
19
11
28
1.87
25542503--25542544
22
1.9
22
90
0
66
45
14
9
30
1.77
25544638--25544692
28
2.0
28
92
0
92
32
10
18
38
1.85
25557845--25557897
27
2.0
27
85
7
72
35
5
0
58
1.22
25558300--25558334
2
17.5
2
100
0
70
48
0
0
51
1.00
25558445--25558482
12
3.2
12
82
10
51
57
5
0
36
1.21
25562284--25562314
3
10.0
3
93
6
53
0
35
0
64
0.94
25570899--25570951
27
2.0
27
96
0
97
35
11
11
41
1.77
25571879--25571923
20
2.2
20
88
0
63
13
0
64
22
1.28
25572463--25572511
25
1.9
26
91
4
82
46
2
10
40
1.49
25589685--25589740
2
28.0
2
83
0
58
48
1
5
44
1.36
25590297--25590324
2
14.0
2
100
0
56
50
0
0
50
1.00
25590435--25590479
18
2.5
18
85
7
56
84
8
0
6
0.78
25590584--25590626
22
2.0
22
85
0
59
30
48
9
11
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25590715--25590761
24
2.0
24
86
0
67
21
34
6
38
1.79
25591743--25591778
16
2.2
17
90
5
56
52
27
0
19
1.46
25593017--25593063
18
2.6
18
80
12
53
80
10
6
2
0.96
25593684--25593737
20
2.6
21
77
11
58
29
0
1
68
1.00
25594110--25594180
16
4.4
17
69
16
60
49
29
1
19
1.57
25602383--25602474
48
1.9
48
95
0
166
42
8
18
30
1.80
25623596--25623625
12
2.5
12
100
0
60
56
10
0
33
1.32
25623979--25624020
21
2.0
21
85
0
57
19
2
7
71
1.20
25624729--25624775
13
3.8
13
78
10
55
25
0
6
68
1.13
25624754--25624802
21
2.3
21
80
16
57
16
6
4
73
1.19
25624863--25624910
25
1.9
25
83
8
62
47
2
8
41
1.45
25625106--25625386
60
4.8
59
83
7
365
48
3
9
38
1.52
25625107--25625386
117
2.4
118
87
4
386
48
3
9
38
1.52
25628877--25628914
1
38.0
1
89
0
58
94
2
2
0
0.35
25629269--25629358
11
7.9
11
70
16
58
82
0
10
7
0.85
25629266--25629358
13
6.8
14
74
14
77
80
0
10
8
0.90
25629266--25629358
28
3.4
27
81
7
98
80
0
10
8
0.90
25629289--25629356
35
1.9
35
85
11
95
83
0
5
10
0.79
25630488--25630680
46
4.3
46
82
3
196
39
7
14
38
1.74
25630479--25630763
21
12.8
24
68
17
111
39
6
14
39
1.72
25630596--25630690
42
2.3
41
87
3
127
41
6
15
36
1.73
25630730--25630902
79
2.2
79
84
2
222
41
9
15
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25630964--25631232
114
2.4
114
87
1
369
37
13
14
34
1.86
25632615--25632655
16
2.5
17
84
4
57
12
7
4
75
1.16
25632716--25632765
25
2.0
26
85
14
70
48
2
8
42
1.44
25632716--25632778
25
2.5
26
80
7
69
44
3
11
41
1.56
25632876--25633037
59
2.8
58
79
11
156
43
4
11
40
1.61
25634341--25634368
4
7.0
4
100
0
56
0
25
0
75
0.81
25639968--25640006
2
20.5
2
89
10
64
51
0
0
48
1.00
25643156--25643226
10
7.6
9
76
17
56
21
0
5
73
1.04
25643152--25643219
16
4.6
15
74
20
63
20
0
4
75
0.98
25643152--25643219
22
3.1
22
77
10
68
20
0
4
75
0.98
25643167--25643226
28
2.1
29
79
14
72
21
0
5
73
1.02
25643437--25643465
3
10.0
3
92
7
51
34
0
0
65
0.93
25644319--25644443
19
7.0
17
70
19
60
20
3
3
73
1.11
25644369--25644434
27
2.5
26
78
11
71
15
6
1
77
1.04
25644377--25644455
6
13.7
6
71
12
58
13
6
1
78
1.00
25644470--25644689
58
3.9
56
75
15
211
47
7
11
33
1.68
25644565--25644673
50
2.1
51
81
8
130
44
10
12
32
1.76
25648113--25648157
16
2.6
17
86
6
56
77
2
8
11
1.07
25648113--25648158
17
2.6
17
82
3
56
78
2
8
10
1.05
25648107--25648164
19
2.9
21
75
15
59
75
1
10
12
1.11
25649407--25649947
41
13.1
41
90
2
811
24
15
23
37
1.93
25649409--25649909
245
2.0
246
93
2
864
24
15
22
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25649955--25650016
1
62.0
1
73
0
52
87
6
0
6
0.68
25649955--25650016
19
3.3
19
90
4
90
87
6
0
6
0.68
25649955--25650016
27
2.4
25
89
8
88
87
6
0
6
0.68
25649955--25650016
9
6.5
10
80
9
67
87
6
0
6
0.68
25650449--25650477
3
10.0
3
92
7
51
34
0
0
65
0.93
25650812--25650848
19
1.9
19
88
0
56
27
5
21
45
1.73
25650941--25650993
20
2.7
20
84
0
79
30
16
15
37
1.90
25651357--25651413
27
2.1
27
81
12
64
15
7
1
75
1.10
25651364--25651431
15
4.3
15
75
14
66
13
7
1
77
1.03
25651413--25651454
22
1.9
22
85
9
59
14
11
2
71
1.24
25651470--25651650
59
3.1
58
84
6
240
45
7
12
34
1.69
25651467--25651742
58
4.8
58
76
14
259
45
6
11
36
1.66
25655014--25655055
13
3.7
11
82
14
50
23
7
0
69
1.13
25655025--25655053
13
2.1
14
93
6
51
20
6
0
72
1.07
25658093--25658140
12
3.8
12
76
15
51
75
0
18
6
1.01
25658112--25658149
12
3.4
12
89
10
55
81
0
13
5
0.85
25658135--25658165
8
3.8
8
95
4
53
80
0
9
9
0.90
25658112--25658165
10
5.5
10
83
16
53
79
0
12
7
0.92
25660044--25660187
42
3.5
41
86
2
198
25
14
17
42
1.87
25660304--25660444
43
3.2
43
81
2
156
27
15
17
39
1.90
25660448--25660503
26
2.2
25
87
12
87
78
5
0
16
0.92
25660455--25660510
26
2.1
27
86
6
78
75
7
5
12
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25660913--25660948
11
3.2
11
88
4
54
72
19
8
0
1.10
25662525--25662684
59
2.7
59
81
6
180
45
5
10
38
1.61
25663687--25663721
14
2.3
16
90
9
56
40
0
14
45
1.45
25663801--25663987
91
2.1
91
96
1
349
35
8
12
43
1.72
25663967--25663991
2
12.5
2
100
0
50
48
0
0
52
1.00
25669606--25669751
52
2.8
52
78
5
154
36
8
18
35
1.82
25669613--25669751
50
2.7
50
78
5
145
36
9
17
36
1.82
25672182--25672275
48
2.0
48
84
0
125
35
7
29
27
1.84
25674207--25674232
13
2.0
13
100
0
52
23
15
30
30
1.95
25674892--25674964
26
2.7
27
79
8
69
63
2
1
32
1.17
25674944--25675054
23
5.0
23
69
15
63
52
0
0
46
1.06
25682904--25682934
16
2.0
15
93
6
53
51
22
12
12
1.74
25689587--25689630
19
2.3
19
96
0
79
29
18
25
27
1.98
25690716--25691333
307
2.0
307
99
0
1211
23
19
17
39
1.92
25694547--25694587
18
2.3
18
95
0
73
39
14
12
34
1.84
25698950--25698989
12
3.3
12
86
10
55
67
0
0
32
0.91
25698949--25698986
11
3.4
11
89
7
58
68
0
0
31
0.90
25699713--25699768
26
2.2
26
90
0
85
35
10
0
53
1.36
25701208--25701243
2
18.0
2
88
0
54
44
0
5
50
1.25
25713303--25713336
2
17.0
2
87
0
50
47
2
2
47
1.32
25717238--25717263
11
2.4
11
100
0
52
53
11
0
34
1.37
25717366--25717761
195
2.0
195
99
0
774
33
14
16
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25720296--25720640
57
6.1
56
71
17
205
35
9
6
49
1.60
25720412--25720612
60
3.5
59
75
16
190
38
7
4
48
1.54
25720523--25720701
53
3.3
53
76
14
156
38
6
4
50
1.47
25722813--25722848
16
2.3
15
95
4
63
63
0
0
36
0.94
25723037--25723086
21
2.2
21
82
10
55
50
0
2
48
1.12
25723047--25723089
21
2.1
20
91
4
68
46
0
0
53
1.00
25723915--25723945
15
2.1
15
94
5
55
77
0
22
0
0.77
25732344--25732395
26
2.0
26
85
7
70
44
17
23
15
1.86
25737257--25737288
14
2.3
14
94
0
55
59
0
3
37
1.13
25737313--25737362
10
4.9
10
80
4
55
62
2
0
36
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133