genome.fa.s645.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  105  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20559338--20559418	24	3.2	25	75	16	87	51	0	0	48	1.00
20562192--20562388	13	15.2	13	76	14	142	46	33	0	19	1.50
20562182--20562393	7	32.5	6	77	13	149	47	32	0	19	1.50
20562182--20562448	19	13.7	19	74	14	156	46	33	0	19	1.53
20562501--20562544	18	2.3	20	80	15	65	25	18	11	45	1.82
20562507--20562551	18	2.5	18	92	0	81	24	20	11	44	1.83
20567188--20567220	2	16.5	2	93	0	57	48	3	0	48	1.17
20567124--20567319	99	2.0	99	93	0	338	43	6	7	42	1.58
20567287--20567322	2	18.0	2	88	0	54	50	0	2	47	1.15
20567757--20567782	2	13.0	2	100	0	52	50	0	0	50	1.00
20568280--20568307	2	14.0	2	100	0	56	50	0	0	50	1.00
20568567--20568648	24	3.2	25	75	14	87	52	0	0	47	1.00
20569027--20569070	9	4.6	9	81	13	52	72	0	4	22	1.02
20571415--20571597	7	27.9	7	75	12	120	48	32	0	18	1.53
20571425--20571602	13	13.5	13	73	12	82	48	31	0	19	1.54
20571415--20571597	20	9.0	19	66	21	52	48	32	0	18	1.53
20571606--20571656	26	1.9	26	84	4	66	45	27	7	19	1.78
20571738--20571781	18	2.3	20	76	15	56	22	18	13	45	1.84
20571744--20571788	18	2.5	18	88	0	72	22	20	13	44	1.85
20576074--20576166	18	4.9	18	73	15	73	75	3	2	19	1.05
20576081--20576150	36	1.9	36	86	11	99	77	4	1	17	1.01
20576124--20576171	19	2.6	18	83	3	60	77	2	4	16	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20576553--20576593	21	2.0	21	85	0	55	53	29	0	17	1.44
20577013--20577161	3	51.0	3	68	21	77	56	5	4	34	1.41
20577012--20577090	17	4.4	18	73	19	67	56	3	5	34	1.39
20577013--20577161	35	4.4	34	77	14	130	56	5	4	34	1.41
20577039--20577161	40	3.2	40	73	9	119	56	5	4	34	1.42
20577672--20577919	120	2.1	120	80	4	277	45	15	18	19	1.85
20577698--20577954	120	2.1	120	82	5	306	45	15	19	19	1.85
20578241--20578364	51	2.4	51	78	9	126	40	10	18	30	1.84
20578352--20578416	33	1.9	33	87	6	94	38	13	12	35	1.83
20579621--20579676	20	2.8	20	86	10	78	3	17	0	78	0.89
20579621--20579677	21	2.8	20	91	2	87	3	17	0	78	0.88
20583992--20584085	49	1.9	49	89	4	145	20	8	7	63	1.46
20584109--20584179	24	3.1	23	82	13	76	77	1	4	16	1.00
20584109--20584163	5	10.8	5	77	14	51	78	0	3	18	0.90
20584538--20584580	20	2.0	20	86	8	59	32	25	2	39	1.69
20585000--20585128	3	45.3	3	70	16	96	62	3	2	31	1.26
20585030--20585128	17	6.1	16	79	10	96	58	4	2	35	1.28
20589607--20589644	15	2.4	16	86	4	60	15	5	2	76	1.08
20590777--20590817	14	3.2	13	83	10	57	48	2	0	48	1.14
20591529--20591606	29	2.6	30	86	6	97	35	5	2	56	1.35
20591750--20591839	30	3.0	30	75	0	81	43	1	13	42	1.51
20592847--20592871	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20594097--20594130	18	2.0	16	88	11	50	11	8	2	76	1.12
20595506--20595553	24	2.0	25	83	4	62	35	4	8	52	1.51
20596988--20597030	16	2.8	16	80	16	54	46	0	0	53	1.00
20596974--20597024	16	3.1	17	81	16	54	43	0	1	54	1.11
20597599--20598015	208	2.0	207	95	1	755	33	18	21	26	1.96
20599401--20599462	28	2.3	27	81	10	72	53	8	6	32	1.56
20603330--20603374	22	2.0	22	82	0	54	15	4	2	77	1.02
20604284--20604330	12	4.1	11	82	12	51	12	2	4	80	0.94
20604398--20604741	60	5.7	58	89	7	453	45	8	13	33	1.74
20608387--20608426	15	2.6	16	92	7	66	52	2	0	45	1.14
20608860--20608903	17	2.5	18	85	14	65	13	9	2	75	1.14
20609540--20609628	30	2.9	30	73	6	81	43	0	12	43	1.42
20610426--20610456	16	1.9	16	93	0	53	77	3	0	19	0.90
20610759--20610792	3	11.3	3	100	0	68	32	0	0	67	0.91
20611407--20611452	3	15.7	3	78	13	51	32	4	2	60	1.28
20611407--20611453	17	2.8	16	81	12	58	34	4	2	59	1.29
20611408--20611446	20	2.0	20	94	0	69	30	2	2	64	1.21
20612042--20612073	2	16.0	2	93	0	55	50	3	0	46	1.17
20615153--20615245	47	2.0	47	82	4	116	31	13	7	47	1.71
20615201--20615328	58	2.2	58	82	9	154	36	11	7	43	1.70
20615333--20615386	5	10.6	5	84	11	74	81	1	0	16	0.78
20615334--20615386	16	3.4	16	90	10	76	83	1	0	15	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20615418--20615467	3	16.7	3	89	8	75	70	0	2	28	0.99
20615424--20615476	27	2.1	24	83	16	63	71	0	3	24	1.02
20615885--20615909	13	1.9	13	100	0	50	44	16	8	32	1.76
20616243--20616276	16	2.1	17	94	5	61	73	0	5	20	1.04
20616256--20616351	27	3.5	28	75	14	94	59	3	5	32	1.35
20616353--20616385	14	2.3	15	94	5	59	75	3	0	21	0.93
20616582--20616780	43	4.6	43	89	0	281	44	20	12	22	1.85
20616685--20616893	106	2.0	104	89	3	321	43	19	14	23	1.87
20616790--20616923	44	3.1	44	83	2	146	41	18	16	23	1.90
20616824--20616948	44	3.0	41	84	10	139	40	20	14	24	1.89
20617954--20618000	14	3.4	14	82	8	51	4	14	0	80	0.85
20623680--20623797	60	2.0	60	80	9	134	38	10	4	46	1.57
20623690--20624019	59	5.7	58	85	7	408	38	11	7	42	1.70
20624861--20624974	27	4.3	26	80	8	104	62	2	5	29	1.31
20624861--20624974	26	4.2	30	79	14	85	62	2	5	29	1.31
20624874--20624974	27	3.8	26	79	8	107	61	1	4	31	1.28
20624861--20624974	53	2.1	54	83	4	142	62	2	5	29	1.31
20630648--20630725	41	1.9	41	86	0	111	28	15	16	39	1.89
20632752--20632797	16	2.8	17	74	12	51	41	0	0	58	0.98
20632883--20632929	17	2.8	17	81	9	60	12	4	0	82	0.80
20633310--20633398	30	2.9	30	73	6	81	43	0	12	43	1.42
20633360--20633440	29	2.7	30	71	17	71	41	0	14	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20637166--20637719	145	3.8	144	80	3	533	33	14	13	38	1.85
20637167--20637719	290	1.9	290	82	4	695	33	14	13	38	1.85
20641639--20641673	16	2.4	14	90	9	52	74	17	2	5	1.14
20646395--20646455	6	10.0	6	81	10	52	78	3	4	13	1.03
20646402--20646455	26	2.1	25	86	10	74	79	3	5	11	1.02
20646396--20646459	32	2.0	31	85	8	85	79	4	4	10	1.02
20647516--20647556	13	2.9	15	82	14	59	85	12	0	2	0.70
20647516--20647556	18	2.3	18	87	4	57	85	12	0	2	0.70
20648112--20648275	83	2.0	83	80	4	188	37	22	11	28	1.89
20648809--20649134	104	3.2	102	80	2	294	34	20	11	33	1.88
20649501--20649527	2	13.5	2	100	0	54	51	0	48	0	1.00
20649701--20649973	96	2.8	96	87	1	377	34	16	14	34	1.89
20650658--20651063	145	2.8	144	83	4	478	33	12	11	43	1.78
20654064--20654096	11	2.8	12	90	9	50	39	3	0	57	1.14
20655532--20655580	21	2.3	21	85	0	62	71	4	2	22	1.13
20655549--20655664	16	6.8	17	67	20	64	71	3	3	21	1.16
20655548--20655616	26	2.6	25	76	17	68	72	1	4	21	1.10
20655597--20655638	22	2.0	21	86	13	59	66	7	2	23	1.28
20655548--20655680	11	11.3	11	66	24	51	72	3	4	19	1.15
20655634--20655669	19	1.9	18	88	5	54	80	2	2	13	0.93
20655814--20655848	16	2.2	16	89	0	52	17	34	5	42	1.73
20656010--20656048	21	1.9	21	84	5	53	48	30	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20656463--20656600	3	46.3	3	83	1	170	65	0	4	29	1.17
20656851--20657000	55	2.7	56	74	10	144	40	16	22	20	1.92
20660340--20660453	3	40.3	3	67	15	64	33	2	5	58	1.34
20660357--20660453	45	2.2	45	83	3	115	35	2	5	57	1.32
20660340--20660452	15	7.8	15	71	19	71	33	2	5	58	1.35
20660929--20660967	18	2.1	19	90	4	62	33	0	17	48	1.48
20661301--20661345	13	3.5	13	84	0	63	24	2	2	71	1.09
20661301--20661353	26	2.1	25	85	3	70	22	1	3	71	1.12
20661299--20661378	20	4.1	19	76	16	67	22	1	5	71	1.13
20669945--20670042	5	20.2	5	81	14	107	37	0	4	58	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133