genome.fa.s645.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  129  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25206903--25206978	38	2.1	38	82	9	95	38	2	1	57	1.21
25206982--25207007	5	5.2	5	100	0	52	42	0	0	57	0.98
25207914--25207977	29	2.3	27	80	20	69	26	6	4	62	1.39
25207912--25207957	21	2.4	18	78	21	58	21	6	2	69	1.22
25208004--25208060	18	3.3	17	83	13	64	82	5	3	8	0.93
25213468--25213493	13	2.0	13	100	0	52	53	30	0	15	1.42
25213886--25213913	2	14.0	2	100	0	56	50	0	0	50	1.00
25214537--25214568	2	16.0	2	100	0	64	50	0	0	50	1.00
25216554--25216607	4	13.5	4	96	0	99	25	1	24	48	1.61
25218999--25219039	19	2.1	20	90	4	66	75	0	4	19	0.98
25220836--25220871	14	2.6	14	90	0	54	44	2	2	50	1.31
25224995--25225064	31	2.3	31	80	2	79	50	5	1	42	1.35
25228548--25228804	130	2.0	130	96	0	478	36	14	17	31	1.90
25236482--25236522	2	20.5	2	100	0	82	48	0	0	51	1.00
25237078--25237115	2	19.5	2	83	5	51	44	2	2	50	1.30
25243250--25243290	12	3.6	12	74	12	50	31	2	0	65	1.05
25245502--25245546	15	3.1	15	74	6	56	22	22	6	48	1.73
25249321--25249382	25	2.4	26	76	10	65	50	11	1	37	1.48
25255705--25255829	64	1.9	65	84	10	168	56	3	1	39	1.25
25256342--25256397	23	2.4	22	79	8	58	64	1	1	32	1.14
25265904--25265945	18	2.3	19	87	4	59	71	2	0	26	0.98
25274206--25274871	342	1.9	342	100	0	1332	26	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25276670--25277135	233	2.0	233	100	0	932	29	17	24	28	1.97
25279935--25279981	24	2.0	24	83	8	60	38	0	2	59	1.09
25286734--25286776	21	2.0	23	86	9	63	27	18	9	44	1.80
25303347--25303427	27	2.9	28	85	3	119	35	8	20	34	1.84
25308420--25308518	29	3.4	29	73	13	87	19	1	30	49	1.55
25308418--25308511	30	3.2	30	72	14	88	19	1	29	50	1.55
25308830--25308880	3	16.3	3	78	15	50	27	1	3	66	1.20
25310735--25310786	18	3.0	18	80	5	54	53	5	1	38	1.36
25313574--25313627	21	2.6	21	76	5	56	29	0	1	68	1.00
25322256--25322385	35	3.6	35	88	7	174	36	14	11	36	1.83
25322977--25323062	42	2.0	42	88	0	127	20	16	24	38	1.93
25322830--25323193	183	2.0	183	83	0	467	26	13	19	41	1.88
25323107--25323325	99	2.2	99	82	1	260	24	13	21	40	1.89
25323491--25323725	99	2.4	99	87	0	335	23	15	20	40	1.91
25322991--25323718	390	1.9	390	85	2	1005	25	13	20	39	1.90
25323794--25324106	50	6.1	51	76	9	244	30	12	17	39	1.87
25323794--25324077	152	1.9	154	83	8	384	31	12	16	39	1.86
25323794--25324106	153	2.0	154	82	7	379	30	12	17	39	1.87
25324462--25324510	18	2.7	17	81	12	53	77	6	0	16	0.96
25324461--25324503	9	4.7	9	88	2	50	79	6	0	13	0.93
25324453--25324510	27	2.2	27	81	9	66	79	5	0	15	0.90
25325481--25325535	21	2.5	22	79	2	58	29	0	3	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25326077--25326128	21	2.5	20	75	22	52	67	0	1	30	1.02
25326122--25326176	27	2.0	27	96	0	101	38	12	14	34	1.84
25327418--25327454	19	1.9	19	94	0	65	62	5	5	27	1.39
25328016--25328054	19	2.0	21	85	10	55	33	0	0	66	0.92
25328035--25328105	31	2.3	31	77	0	79	39	0	1	59	1.06
25328072--25328122	21	2.5	21	93	3	86	49	0	0	50	1.00
25330331--25330417	41	2.1	42	91	2	140	40	19	20	19	1.92
25339864--25339916	26	2.1	24	83	13	63	39	1	0	58	1.09
25339852--25339904	22	2.3	23	84	9	65	39	0	1	58	1.09
25339852--25339930	24	3.3	23	76	16	63	43	1	1	54	1.16
25339869--25339926	21	2.8	20	77	12	53	43	1	0	55	1.10
25341341--25341379	2	19.5	2	100	0	78	48	0	0	51	1.00
25341556--25341600	23	2.0	23	82	8	56	46	0	0	53	1.00
25341727--25341774	18	2.7	18	81	9	53	45	8	6	39	1.59
25344234--25344266	7	4.9	7	88	7	50	51	0	0	48	1.00
25344345--25344396	26	2.0	27	84	3	70	53	5	1	38	1.36
25345296--25345347	27	1.9	27	84	7	70	59	1	0	38	1.08
25363970--25364023	15	3.5	15	82	10	56	62	3	1	31	1.23
25364849--25364893	14	3.3	14	81	12	58	37	0	2	60	1.09
25365917--25365946	13	2.3	13	94	0	51	46	0	0	53	1.00
25369264--25369292	15	2.0	15	93	6	51	48	0	6	44	1.29
25370216--25370261	23	2.0	23	95	0	83	32	19	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25374668--25374722	22	2.3	25	81	9	62	47	0	0	52	1.00
25374817--25374851	18	1.9	18	88	0	52	28	0	0	71	0.86
25374799--25374851	24	2.2	25	86	3	72	32	0	0	67	0.91
25374818--25374851	12	2.8	12	83	16	52	26	0	0	73	0.83
25375251--25375291	20	2.0	21	90	4	66	48	0	0	51	1.00
25375259--25375299	20	2.0	20	86	9	57	51	0	0	48	1.00
25378678--25378713	2	18.0	2	100	0	72	50	0	0	50	1.00
25382918--25383137	65	3.4	64	75	7	201	34	15	9	40	1.79
25384972--25385049	34	2.3	35	82	10	90	51	2	5	41	1.38
25385651--25385687	19	2.0	18	89	5	56	54	0	2	43	1.14
25393562--25393600	21	1.9	21	89	5	62	41	0	0	58	0.98
25406376--25406421	20	2.4	20	79	17	53	10	13	13	63	1.53
25408311--25408394	42	2.0	42	97	0	159	28	25	9	36	1.87
25415917--25415974	30	1.9	30	92	0	98	41	5	1	51	1.34
25416774--25416818	19	2.3	20	85	7	58	24	2	0	73	0.95
25417949--25417987	12	3.3	12	89	7	62	38	0	2	58	1.12
25417955--25417987	11	2.9	11	95	4	57	39	0	0	60	0.97
25417950--25418026	41	1.9	39	86	5	109	42	0	3	53	1.19
25417978--25418024	24	2.0	24	86	0	67	46	0	4	48	1.21
25419543--25419621	36	2.1	39	81	6	92	36	6	0	56	1.25
25419560--25419613	25	2.2	26	90	6	85	37	3	0	59	1.15
25419596--25419626	15	2.0	16	93	6	55	41	6	0	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25422731--25422797	17	3.9	18	72	14	61	43	0	2	53	1.16
25422730--25422810	7	11.4	7	70	19	53	43	1	2	53	1.22
25422759--25422820	24	2.5	24	76	10	63	41	1	6	50	1.38
25424104--25424908	401	2.0	401	96	0	1466	34	12	15	37	1.85
25428296--25428325	15	1.9	16	93	6	53	43	6	0	50	1.28
25443972--25444032	14	4.3	14	75	17	63	39	3	9	47	1.53
25443970--25444035	15	4.5	15	72	16	50	37	3	9	50	1.50
25443970--25444036	29	2.3	30	89	7	102	37	2	8	50	1.49
25448996--25449156	81	2.0	81	97	0	304	27	12	18	41	1.86
25454976--25455041	24	3.0	22	77	14	66	42	0	6	51	1.26
25454976--25455041	21	3.0	21	73	14	62	42	0	6	51	1.26
25457521--25457553	2	16.5	2	93	0	57	51	3	0	45	1.16
25460617--25460670	26	2.1	26	100	0	108	38	25	0	35	1.57
25463048--25463074	2	13.5	2	100	0	54	48	0	0	51	1.00
25483351--25483460	29	3.7	30	80	4	116	37	6	6	50	1.54
25483374--25483460	31	2.8	31	85	5	113	41	5	4	48	1.48
25483374--25483464	30	3.0	29	80	13	103	41	5	4	48	1.46
25483498--25483553	29	1.9	29	88	0	85	51	5	1	41	1.35
25484968--25484994	2	13.5	2	100	0	54	51	0	0	48	1.00
25485474--25485510	19	2.1	18	90	10	58	35	13	16	35	1.88
25486307--25486364	29	1.9	31	83	13	77	43	0	1	55	1.10
25486335--25486380	23	2.0	23	82	0	56	36	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25486343--25486392	17	2.9	18	80	17	61	36	0	2	62	1.07
25486565--25486595	2	15.5	2	93	0	53	0	48	0	51	1.00
25489168--25489249	41	2.0	41	95	2	148	17	18	8	56	1.65
25492530--25492555	2	13.0	2	100	0	52	50	0	0	50	1.00
25498928--25498975	19	2.5	18	81	18	53	35	0	0	64	0.94
25500446--25500478	14	2.4	14	100	0	66	15	15	27	42	1.86
25509525--25509557	14	2.4	14	90	10	50	39	9	0	51	1.34
25510657--25510726	10	6.9	10	75	13	63	30	5	0	64	1.17
25510696--25510744	22	2.2	23	82	10	57	32	4	2	61	1.26
25512103--25512384	147	1.9	147	92	1	476	35	4	7	52	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133