Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  46  of  133  ( 15876 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9940443--9940498
17
3.3
16
78
11
51
73
0
19
7
1.06
9940432--9940499
27
2.5
28
79
13
72
73
0
19
7
1.06
9942654--9942773
36
3.3
35
75
4
123
38
18
17
25
1.92
9942656--9942791
72
1.9
72
85
0
191
39
16
16
26
1.90
9942654--9942800
36
4.1
36
73
6
111
38
19
17
25
1.93
9944287--9944405
48
2.4
50
83
4
134
53
3
0
42
1.23
9944448--9944479
16
2.1
16
94
5
57
59
12
0
28
1.34
9944470--9944525
25
2.2
26
81
18
64
53
3
5
37
1.41
9946524--9946565
3
14.0
3
100
0
84
66
0
0
33
0.92
9946564--9946601
3
12.7
3
100
0
76
34
0
0
65
0.93
9946920--9946957
20
1.9
20
94
0
67
42
7
5
44
1.56
9948560--9948633
32
2.3
31
80
11
87
44
1
2
51
1.24
9951164--9951456
58
4.9
61
78
11
252
36
11
6
46
1.65
9953075--9953124
15
3.2
16
75
8
50
78
4
2
16
1.00
9953091--9953136
23
2.0
23
83
8
58
71
6
2
19
1.18
9953348--9953831
42
11.2
42
77
11
417
43
20
13
23
1.86
9953348--9953789
87
5.1
88
83
8
455
43
20
13
22
1.86
9953404--9953834
86
5.0
87
82
9
394
43
19
12
23
1.86
9953670--9953855
42
4.4
42
77
12
161
46
18
10
24
1.80
9953348--9953855
128
3.9
123
73
16
372
43
19
12
23
1.86
9954195--9954242
21
2.3
21
82
3
62
37
12
4
45
1.61
9955438--9955496
16
3.8
16
73
15
61
6
8
1
83
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9959441--9959846
58
6.9
60
84
5
474
37
11
6
44
1.66
9963071--9963109
14
2.9
14
88
3
53
53
12
0
33
1.39
9963214--9963275
32
1.9
32
90
0
97
56
8
6
29
1.53
9964555--9964624
6
12.0
6
80
6
72
64
5
0
30
1.17
9964575--9964616
22
1.9
22
85
0
57
61
7
0
30
1.22
9964569--9964622
28
1.9
28
88
0
81
62
5
0
31
1.18
9964963--9965047
44
1.9
44
81
9
102
31
15
20
32
1.93
9965359--9965431
22
3.3
22
75
3
67
34
17
16
31
1.93
9965355--9965502
44
3.4
44
69
9
115
32
16
20
30
1.95
9965492--9965651
44
3.6
44
76
7
137
33
17
17
31
1.93
9965702--9965750
22
2.2
23
82
10
66
28
14
24
32
1.94
9967234--9967276
7
6.0
7
79
15
52
4
13
0
81
0.84
9971270--9971342
20
3.3
23
75
14
73
57
6
1
34
1.34
9971282--9971376
20
4.8
21
77
13
103
57
9
2
30
1.42
9971299--9971377
20
4.0
20
80
9
108
56
8
1
32
1.38
9971348--9971407
31
1.9
32
89
3
95
58
6
3
31
1.40
9973234--9973331
6
16.3
6
76
4
72
60
8
2
29
1.37
9973232--9973331
36
2.8
36
80
10
107
60
8
2
30
1.37
9975786--9975835
22
2.3
22
92
0
82
26
22
22
30
1.99
9977192--9977292
45
2.3
45
78
1
114
45
7
5
40
1.58
9977743--9977929
58
3.3
58
74
13
152
33
5
6
53
1.52
9977916--9977942
14
1.9
14
100
0
54
37
7
3
51
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9977930--9978079
59
2.6
59
79
4
151
36
11
6
46
1.64
9980212--9980250
20
1.9
21
89
5
62
53
0
2
43
1.14
9980996--9981061
30
2.2
30
83
8
80
62
1
0
36
1.05
9984451--9984513
31
2.0
31
93
0
108
31
22
9
36
1.86
9989490--9989534
20
2.2
20
88
7
65
53
4
6
35
1.47
9992496--9992578
41
2.0
41
100
0
166
33
7
21
37
1.81
9993784--9993818
6
5.7
6
86
6
52
0
0
14
85
0.59
9993784--9993821
19
2.1
19
95
5
69
0
0
13
86
0.56
9994743--9994802
25
2.4
25
84
13
72
55
1
0
43
1.10
9994743--9994791
25
2.0
25
88
8
73
55
2
0
42
1.11
9994930--9994967
17
2.1
19
90
9
62
52
2
5
39
1.38
9995810--9995855
15
3.2
15
75
9
51
60
2
2
34
1.21
10006379--10006422
23
1.9
23
86
9
63
56
0
0
43
0.99
10007415--10007459
23
2.0
22
82
4
54
33
2
0
64
1.06
10008708--10009277
283
2.0
283
91
0
926
37
16
16
29
1.91
10013467--10013549
39
2.1
39
93
0
139
28
16
7
46
1.74
10017844--10017921
22
3.5
22
82
0
84
52
1
5
41
1.32
10017853--10017921
11
6.3
11
79
0
75
55
1
4
39
1.29
10017949--10018018
22
3.2
22
78
8
88
54
1
7
37
1.37
10017946--10018280
22
15.5
22
67
10
75
51
4
7
36
1.51
10018248--10018367
44
2.9
41
75
7
114
45
6
10
37
1.64
10018248--10018352
22
4.9
22
72
11
74
45
7
10
36
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10018423--10018464
22
1.9
22
90
0
66
50
11
2
35
1.52
10018508--10018569
22
2.8
22
80
0
70
46
9
6
37
1.62
10018867--10018925
22
2.8
20
87
12
59
55
6
6
30
1.52
10018879--10019063
22
8.7
22
69
18
99
49
8
8
34
1.62
10018960--10019063
44
2.4
44
79
6
113
50
6
8
34
1.60
10018987--10019074
44
2.0
44
84
8
115
48
7
7
35
1.62
10019080--10019133
22
2.5
21
79
8
54
48
3
7
40
1.49
10019237--10019306
22
3.4
22
67
15
67
48
5
11
34
1.63
10019232--10019317
40
2.2
40
93
0
145
48
4
12
33
1.62
10019413--10019539
22
5.8
22
75
10
98
48
6
8
36
1.59
10019414--10019542
66
2.0
66
82
3
161
48
6
8
37
1.59
10019447--10019542
22
4.4
22
78
0
102
45
5
8
40
1.56
10019574--10019759
44
4.2
44
76
9
130
44
9
9
37
1.68
10019571--10019693
22
5.6
21
81
5
81
45
9
8
36
1.67
10019608--10019691
11
7.6
11
70
5
62
46
7
9
36
1.64
10019577--10019760
66
2.8
66
81
6
169
45
9
8
36
1.67
10019614--10019784
22
7.8
22
77
3
80
45
7
11
36
1.67
10019609--10019810
44
4.6
44
76
1
163
45
7
10
36
1.68
10019750--10019811
22
2.8
22
82
0
70
50
8
11
30
1.67
10020081--10020134
22
2.5
22
78
0
63
51
9
9
29
1.65
10020139--10020217
21
3.8
21
74
11
72
44
13
7
34
1.73
10020141--10020232
42
2.2
42
78
7
107
44
13
8
33
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10020301--10020352
3
17.3
3
95
0
95
30
0
0
69
0.89
10024864--10024913
16
3.5
15
73
15
52
84
0
10
6
0.79
10024970--10025186
59
3.8
58
84
10
284
41
11
4
42
1.62
10025206--10025263
5
11.4
5
82
17
75
79
0
1
18
0.82
10025216--10025269
27
2.0
27
89
10
83
77
0
3
18
0.91
10025212--10025321
22
5.3
22
66
18
74
69
2
1
26
1.12
10025208--10025317
3
37.7
3
67
20
56
69
2
1
26
1.12
10025581--10025608
2
14.0
2
100
0
56
0
50
0
50
1.00
10025654--10025691
20
1.9
20
88
0
58
36
18
15
28
1.92
10026186--10026241
19
3.1
17
76
19
60
58
0
5
35
1.21
10026185--10026291
33
3.2
34
82
11
116
63
0
4
30
1.21
10026185--10026294
37
3.0
37
74
21
97
63
0
4
30
1.20
10026206--10026295
14
6.0
15
74
13
78
64
1
4
30
1.20
10026248--10026307
31
1.9
31
90
6
95
71
1
1
25
1.04
10026258--10026343
23
3.8
23
79
10
81
74
3
1
20
1.03
10026245--10026346
7
13.9
7
73
13
71
74
2
0
21
1.01
10026951--10027115
3
58.0
3
74
14
91
30
3
6
60
1.36
10026944--10027115
47
3.5
48
72
17
133
30
2
5
60
1.35
10027034--10027088
26
2.1
26
83
6
67
38
3
3
54
1.36
10027034--10027116
5
15.4
5
78
12
76
36
3
2
57
1.29
10027919--10028038
15
8.1
14
71
14
73
22
2
1
73
1.04
10033691--10033746
27
2.1
27
93
0
94
30
12
1
55
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10033906--10034111
67
3.1
67
82
0
232
33
12
4
49
1.61
10034144--10034202
21
2.8
21
73
14
50
40
5
3
50
1.41
10034560--10034632
21
3.5
20
68
18
51
34
4
1
60
1.24
10035978--10036028
2
25.5
2
84
7
68
49
1
3
45
1.32
10037097--10037147
3
17.0
3
100
0
102
66
0
0
33
0.92
10038745--10038903
78
2.0
78
96
0
291
37
15
11
35
1.84
10045049--10045140
37
2.6
37
80
12
106
69
6
2
21
1.22
10045841--10045883
8
5.1
8
86
8
59
44
0
4
51
1.22
10046103--10046135
16
2.0
17
88
5
50
42
0
6
51
1.26
10046191--10046237
19
2.3
21
82
7
62
25
2
4
68
1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133