Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  22  of  133  ( 15876 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5402396--5402471
22
3.5
22
87
3
102
34
13
7
44
1.72
5402482--5402533
22
2.4
22
86
0
77
38
3
7
50
1.50
5402482--5402548
22
3.2
21
77
12
66
37
2
7
52
1.45
5404863--5404900
15
2.4
16
86
4
51
81
2
2
13
0.90
5405228--5405277
20
2.5
20
75
15
59
76
0
20
4
0.95
5406365--5406390
11
2.4
11
100
0
52
57
0
0
42
0.98
5408277--5408371
38
2.5
38
89
3
138
47
17
5
29
1.70
5408310--5408385
38
2.2
35
81
13
86
46
23
2
27
1.66
5414819--5414965
78
1.9
78
84
2
197
46
12
11
29
1.77
5415206--5415290
41
2.1
41
84
0
107
40
22
5
31
1.78
5415287--5415347
26
2.3
27
80
8
72
40
18
6
34
1.76
5415732--5416241
104
4.9
103
79
6
462
37
12
13
35
1.83
5415753--5416241
208
2.4
209
82
5
546
37
12
13
35
1.83
5418705--5418735
15
2.1
14
94
5
53
80
0
0
19
0.71
5420574--5420613
19
2.0
20
95
4
73
55
5
0
40
1.22
5420698--5420722
13
1.9
13
100
0
50
88
0
0
12
0.53
5421126--5421181
16
3.5
17
80
9
55
62
0
0
37
0.95
5422123--5422155
3
11.0
3
100
0
66
66
0
0
33
0.92
5422286--5422402
61
1.9
61
91
0
189
35
16
17
31
1.92
5424734--5424769
2
18.0
2
100
0
72
50
0
50
0
1.00
5428236--5428314
39
2.1
35
84
11
104
60
2
0
36
1.10
5428758--5428823
28
2.4
27
82
12
73
45
3
1
50
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5429374--5429418
21
2.1
22
83
4
56
57
2
0
40
1.11
5429448--5429500
26
2.0
27
82
10
65
52
5
0
41
1.25
5436494--5436549
27
2.1
27
83
6
69
67
14
0
17
1.22
5452306--5452820
256
2.0
257
88
2
757
36
14
24
24
1.93
5458184--5458229
22
2.1
22
91
0
74
32
0
0
67
0.91
5458178--5458234
28
2.0
28
89
0
87
33
0
0
66
0.92
5458807--5458889
34
2.4
34
82
4
96
46
10
8
33
1.69
5458921--5458991
34
2.1
34
84
2
90
28
9
15
46
1.77
5461550--5461574
2
12.5
2
100
0
50
48
0
0
52
1.00
5462700--5462748
21
2.3
21
82
0
62
38
12
2
46
1.53
5463051--5463082
17
1.9
17
93
6
57
46
0
0
53
1.00
5463784--5463813
15
2.0
15
93
0
51
40
10
6
43
1.64
5465199--5465279
32
2.6
32
86
9
105
44
9
11
34
1.73
5465913--5465976
20
3.1
21
76
10
62
48
6
6
39
1.54
5466020--5466536
262
1.9
269
89
5
798
42
5
7
44
1.55
5465920--5468199
807
2.9
799
88
4
3308
43
5
7
43
1.56
5479099--5479226
64
2.0
64
89
0
193
29
14
20
35
1.92
5481175--5481238
27
2.3
27
82
15
78
17
4
1
76
1.03
5481189--5481287
20
5.0
20
71
18
73
23
2
2
72
1.05
5481718--5481742
10
2.5
10
100
0
50
16
0
24
60
1.36
5482295--5482446
5
30.2
5
71
19
79
18
3
3
74
1.11
5482290--5482330
4
9.8
4
84
10
55
21
0
2
75
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5482354--5482456
11
9.4
11
74
16
81
15
5
1
76
1.06
5482353--5482438
6
14.7
6
70
18
65
15
5
1
77
1.01
5482359--5482461
32
3.2
31
80
16
104
15
6
1
75
1.10
5482295--5482446
9
15.1
10
73
16
79
18
3
3
74
1.11
5482472--5482868
59
6.7
58
80
7
442
44
6
13
35
1.69
5482477--5482868
117
3.3
117
85
4
531
43
6
13
36
1.70
5486405--5486437
10
3.3
10
95
0
57
90
0
3
6
0.52
5486765--5486822
11
5.2
11
75
10
55
77
0
15
6
0.97
5486765--5486803
12
3.3
12
85
3
53
82
0
10
7
0.86
5488080--5488220
41
3.4
41
91
0
219
24
13
21
40
1.89
5488489--5488532
17
2.4
19
81
7
56
18
4
4
72
1.19
5488483--5488539
20
2.9
19
78
19
64
19
5
3
71
1.19
5489017--5489049
16
2.0
17
88
5
50
15
0
15
69
1.19
5489017--5489049
17
1.9
17
88
11
50
15
0
15
69
1.19
5489564--5489692
11
11.6
11
72
17
54
17
4
3
74
1.12
5489620--5489723
5
20.8
5
74
18
76
15
4
1
77
1.02
5489619--5489723
17
5.9
17
76
11
88
15
4
1
78
1.01
5489740--5490096
117
3.1
116
87
4
513
45
6
12
35
1.68
5489739--5490096
58
6.1
58
84
5
461
45
6
12
35
1.68
5490126--5490248
57
2.1
58
88
4
187
45
5
13
34
1.68
5496452--5496502
25
2.0
25
88
0
75
35
7
9
47
1.66
5503665--5503714
20
2.4
22
87
9
70
40
0
6
54
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5506300--5506347
21
2.3
20
75
10
51
60
12
0
27
1.32
5506414--5506530
61
1.9
61
83
0
153
55
10
5
29
1.55
5506767--5506812
14
3.2
15
82
11
53
67
2
0
30
1.03
5506767--5506829
15
4.2
15
76
15
51
65
1
3
30
1.18
5516513--5516557
20
2.2
20
100
0
90
46
4
4
44
1.43
5516558--5516598
10
4.2
10
81
6
57
53
7
0
39
1.29
5516553--5516610
19
2.8
21
82
15
75
51
8
0
39
1.33
5516682--5516716
16
2.2
16
100
0
70
25
5
11
57
1.56
5516975--5517024
20
2.4
22
87
9
70
40
0
6
54
1.25
5533738--5534016
56
5.0
56
84
4
328
48
6
10
35
1.64
5533737--5534016
113
2.5
111
84
4
364
48
6
10
35
1.63
5534072--5534115
11
3.8
11
77
11
52
63
2
2
31
1.19
5533947--5534143
68
2.8
68
79
14
206
53
5
8
32
1.53
5533947--5534236
72
4.1
66
73
19
198
51
6
8
33
1.57
5534161--5534325
60
2.8
59
79
6
190
47
5
9
36
1.59
5535090--5535135
2
23.0
2
95
0
83
50
2
0
47
1.13
5539289--5539323
3
11.7
3
100
0
70
34
0
0
65
0.93
5545001--5545040
21
1.9
21
89
0
62
7
37
10
45
1.66
5545025--5545106
42
2.0
42
80
4
94
10
46
10
31
1.74
5545033--5545117
21
4.0
21
70
8
66
11
45
10
31
1.75
5545753--5545810
29
2.0
30
86
10
84
32
0
3
63
1.11
5545788--5545837
20
2.5
19
79
17
57
34
2
4
60
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5545819--5545868
26
2.0
25
81
18
59
40
0
2
58
1.10
5561771--5561810
20
2.1
19
85
4
53
70
0
12
17
1.18
5565429--5565458
2
15.0
2
100
0
60
50
0
0
50
1.00
5566541--5566578
3
12.7
3
100
0
76
31
0
34
34
1.58
5568631--5568657
2
13.5
2
100
0
54
51
0
0
48
1.00
5570231--5570255
2
12.5
2
100
0
50
48
0
0
52
1.00
5570361--5570387
14
1.9
14
100
0
54
37
0
0
62
0.95
5572353--5572388
15
2.4
15
85
0
54
52
0
2
44
1.15
5573602--5573666
18
3.4
18
71
19
51
61
3
3
32
1.27
5573756--5573807
26
2.1
26
82
7
63
69
0
5
25
1.10
5574013--5574058
14
3.3
14
93
0
83
54
21
6
17
1.65
5587005--5587077
35
2.1
35
89
0
110
16
17
19
46
1.84
5587674--5587715
21
2.0
21
90
0
66
50
2
4
42
1.36
5589029--5589081
27
2.0
26
82
10
63
69
1
3
24
1.15
5590862--5590903
21
2.0
21
86
9
59
59
0
9
30
1.29
5590979--5591025
21
2.2
21
84
3
58
38
2
2
57
1.23
5591058--5591084
14
1.9
14
100
0
54
44
11
0
44
1.39
5599193--5599228
3
12.0
3
100
0
72
33
0
0
66
0.92
5599843--5599901
16
3.6
16
79
4
64
49
6
5
38
1.52
5606792--5606826
2
17.5
2
100
0
70
51
0
0
48
1.00
5610189--5610213
2
12.5
2
100
0
50
0
52
0
48
1.00
5622941--5622982
22
2.0
22
90
4
68
23
26
4
45
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5630400--5630446
3
15.7
3
90
0
67
6
0
25
68
1.13
5635368--5635393
2
13.0
2
100
0
52
50
0
0
50
1.00
5635495--5635524
12
2.4
13
88
11
53
20
0
0
80
0.72
5638172--5638341
88
1.9
88
96
0
313
32
18
15
34
1.92
5641078--5641205
64
2.0
63
93
4
222
37
13
15
33
1.86
5649990--5650036
2
23.5
2
100
0
94
51
0
48
0
1.00
5650313--5650350
18
2.0
20
85
10
53
57
5
0
36
1.21
5650737--5650769
6
5.8
6
92
7
52
0
0
12
87
0.53
5651171--5651239
28
2.5
28
90
4
104
50
1
2
44
1.25
5652715--5652758
19
2.5
18
85
10
56
40
0
4
54
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133