genome.fa.s645.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  99  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19243982--19244606	210	3.0	211	82	4	774	45	11	20	22	1.83
19245165--19245266	35	2.9	35	85	1	132	50	11	18	18	1.76
19245165--19245299	73	1.9	70	81	7	164	50	11	18	19	1.77
19245275--19245330	28	2.0	28	86	6	78	58	12	12	16	1.62
19246081--19246117	10	3.7	10	88	0	56	5	0	5	89	0.60
19247466--19247512	24	2.0	23	91	4	76	8	17	2	72	1.19
19255102--19255132	4	7.8	4	100	0	62	25	0	0	74	0.82
19255428--19255465	3	12.7	3	100	0	76	34	31	0	34	1.58
19257175--19257598	144	2.9	144	83	3	521	38	15	14	30	1.88
19264153--19264215	23	2.7	23	78	9	65	55	4	1	38	1.31
19264269--19264331	17	3.9	17	76	14	71	55	6	0	38	1.25
19264278--19264340	31	2.0	31	100	0	126	52	6	0	41	1.27
19265004--19265029	2	13.0	2	100	0	52	50	0	0	50	1.00
19265459--19265488	2	15.0	2	92	0	51	46	0	3	50	1.18
19266904--19266930	2	13.5	2	100	0	54	0	48	0	51	1.00
19267890--19267939	15	3.3	15	82	2	55	46	0	0	54	1.00
19268705--19268878	85	2.0	86	90	3	271	32	9	6	51	1.59
19269067--19269094	2	14.0	2	100	0	56	50	0	0	50	1.00
19269322--19269360	2	19.5	2	100	0	78	51	0	0	48	1.00
19273716--19273798	30	2.8	30	78	8	98	46	1	7	44	1.38
19274117--19274170	22	2.4	23	84	3	74	57	0	1	40	1.09
19274160--19274214	26	2.2	26	90	3	85	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19274122--19274241	48	2.4	49	81	10	138	50	0	0	47	1.12
19277061--19277115	26	2.1	26	89	0	83	41	5	3	49	1.43
19277151--19277181	14	2.1	15	94	5	55	32	0	0	67	0.91
19279221--19279295	40	1.9	38	84	7	98	29	16	10	44	1.81
19281019--19281183	67	2.5	65	85	4	222	49	15	17	17	1.81
19285425--19285508	33	2.5	33	74	14	84	53	2	2	41	1.27
19286694--19286742	19	2.6	19	78	12	55	67	2	0	30	1.02
19287219--19287257	21	2.0	20	90	10	62	53	0	0	46	1.00
19288103--19288167	21	3.1	21	81	0	76	35	4	4	55	1.41
19289588--19289649	29	2.1	29	85	5	81	64	3	3	29	1.25
19299144--19299498	195	1.8	194	82	10	465	36	11	7	44	1.69
19299561--19299600	19	2.2	19	86	4	55	80	7	2	10	1.00
19300102--19300143	21	2.0	21	86	9	59	61	9	7	21	1.50
19300645--19301001	41	9.1	41	76	11	200	43	20	12	24	1.86
19300745--19300835	32	2.8	32	94	0	155	42	20	12	24	1.86
19300814--19300999	82	2.3	82	83	1	230	44	19	11	24	1.83
19312926--19312980	25	2.2	25	80	9	58	40	7	5	47	1.54
19313074--19313114	21	2.0	21	85	9	57	78	9	0	12	0.98
19326463--19326539	18	4.3	18	65	21	54	28	1	9	61	1.35
19328256--19328409	29	5.4	27	76	19	145	62	0	3	33	1.13
19328258--19328362	29	3.3	33	83	15	148	64	0	2	32	1.08
19328288--19328438	53	2.9	51	81	11	175	63	0	3	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19328287--19328358	37	2.0	37	83	8	94	65	0	2	31	1.07
19328262--19328423	19	8.5	19	67	25	67	62	0	3	33	1.12
19328652--19328704	26	2.0	26	92	0	88	49	13	9	28	1.73
19328801--19329012	41	5.2	41	77	8	216	39	20	15	25	1.91
19328770--19329004	123	1.9	126	82	7	300	42	18	14	23	1.88
19340879--19340916	3	12.7	3	100	0	76	68	0	0	31	0.90
19341749--19341846	32	3.3	31	72	21	109	62	1	2	34	1.14
19341757--19341841	11	7.6	11	72	13	59	61	0	2	36	1.09
19341762--19341828	34	2.0	34	91	5	109	61	0	1	37	1.05
19341752--19341930	58	3.2	56	82	8	192	62	1	2	33	1.17
19341792--19341905	15	7.3	15	67	23	58	62	0	3	34	1.12
19342442--19342506	8	8.0	8	72	14	53	49	0	0	50	1.00
19342543--19342576	17	2.0	16	88	11	50	26	0	0	73	0.83
19343322--19343365	5	9.0	5	95	5	72	43	0	0	56	0.99
19347431--19347475	22	2.0	22	91	0	72	42	6	40	11	1.67
19347915--19347952	14	2.8	14	81	18	53	42	2	5	50	1.39
19348096--19348144	19	2.4	21	83	6	66	48	0	2	48	1.12
19360754--19360864	53	2.1	53	88	1	161	50	9	9	30	1.66
19366880--19366906	13	2.1	13	100	0	54	40	7	14	37	1.74
19367907--19367991	33	2.6	32	83	9	100	21	5	2	70	1.20
19367860--19367991	5	25.6	5	75	19	80	21	6	2	70	1.20
19367907--19368005	32	3.2	32	78	17	111	21	8	3	67	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19367948--19368005	27	2.1	27	84	6	73	20	8	3	67	1.33
19368013--19368039	3	9.0	3	100	0	54	33	0	0	66	0.92
19368694--19368731	20	2.0	20	89	5	60	26	7	13	52	1.67
19368697--19368740	20	2.2	20	84	8	54	22	6	15	54	1.65
19369132--19369276	59	2.5	56	77	13	152	51	7	8	32	1.60
19407879--19407984	12	8.2	13	71	16	69	75	5	3	15	1.13
19407910--19407970	19	3.2	19	77	11	63	78	6	1	13	1.01
19407910--19407952	18	2.3	19	88	4	61	81	6	0	11	0.87
19407906--19408003	50	1.9	51	82	12	121	77	8	3	11	1.09
19408849--19408874	5	5.2	5	100	0	52	19	0	19	61	1.35
19409042--19409138	6	16.2	6	74	4	70	60	10	1	27	1.36
19409043--19409138	24	4.0	23	79	10	86	60	10	1	28	1.36
19411747--19411780	3	11.3	3	100	0	68	32	0	0	67	0.91
19416695--19416744	20	2.5	20	78	9	57	48	0	2	50	1.12
19416716--19416750	17	1.9	19	88	11	56	54	0	0	45	0.99
19417396--19417478	29	2.7	30	72	25	75	43	1	2	53	1.21
19418936--19418994	24	2.5	23	78	10	66	35	3	0	61	1.13
19418950--19418985	16	2.2	16	90	0	54	30	5	0	63	1.17
19420164--19420291	18	7.7	18	74	19	102	53	1	0	44	1.09
19420175--19420304	15	8.6	15	74	15	99	56	1	0	42	1.09
19420159--19420324	78	2.1	77	79	7	192	54	1	0	43	1.12
19420396--19420454	27	2.3	26	79	5	66	49	5	0	45	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19420580--19420609	14	2.1	14	93	0	51	40	13	3	43	1.60
19421345--19421396	2	26.0	2	94	0	77	44	1	3	50	1.31
19424287--19424328	15	2.8	16	85	10	61	26	0	21	52	1.47
19424474--19424553	3	27.3	3	81	5	92	26	0	5	68	1.09
19424688--19424719	3	10.7	3	100	0	64	34	0	0	65	0.93
19424522--19424885	166	2.2	166	93	2	608	32	6	6	53	1.54
19424854--19424901	3	16.0	3	95	0	87	31	0	2	66	1.03
19426467--19426702	37	6.4	37	77	9	205	46	15	22	15	1.83
19426472--19426702	74	3.1	73	80	10	265	46	16	22	15	1.83
19426469--19426709	110	2.2	111	78	6	265	47	15	21	15	1.82
19426910--19427164	130	1.9	131	84	3	334	38	15	19	26	1.91
19426653--19427097	239	1.9	240	85	3	619	38	16	20	24	1.92
19427183--19427388	110	1.9	110	84	2	279	40	17	19	21	1.91
19427295--19427465	88	1.9	88	84	6	231	45	17	16	19	1.85
19427596--19427637	22	1.9	22	95	0	75	26	21	21	30	1.98
19427867--19428016	41	3.7	41	87	1	203	32	13	18	36	1.89
19436250--19436282	16	2.0	17	88	5	50	27	6	0	66	1.15
19436499--19436539	15	2.7	15	88	7	57	24	0	26	48	1.51
19436498--19436554	22	2.6	23	72	13	57	24	0	28	47	1.52
19436504--19436559	22	2.6	21	80	8	58	25	0	28	46	1.53
19436514--19436560	15	3.3	15	82	5	53	23	0	25	51	1.49
19436686--19436753	3	23.3	3	80	5	77	27	1	4	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19436692--19436742	14	3.6	14	86	7	59	27	0	3	68	1.07
19436862--19436919	3	20.7	3	77	10	52	25	1	5	67	1.21
19438526--19438550	2	12.5	2	100	0	50	52	0	0	48	1.00
19444419--19444455	18	2.1	18	89	0	56	51	10	5	32	1.60
19445772--19445805	18	1.9	17	88	5	50	44	0	2	52	1.16
19446430--19446468	21	1.9	20	89	5	60	48	2	17	30	1.61
19446824--19446880	26	2.2	26	87	0	78	29	5	3	61	1.35
19456608--19456658	21	2.4	22	83	6	70	52	0	0	47	1.00
19457103--19457176	11	6.5	11	70	14	53	64	0	0	35	0.94
19457104--19457191	35	2.6	33	77	8	86	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133