genome.fa.s645.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  25  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6075131--6075251	32	3.8	30	77	7	107	44	2	4	48	1.35
6075459--6075490	12	2.5	13	95	5	57	46	0	0	53	1.00
6075600--6075646	18	2.7	18	73	3	51	48	2	0	48	1.13
6075655--6075705	16	3.3	15	78	8	57	62	7	1	27	1.33
6077310--6077477	73	2.4	66	81	10	178	57	2	4	34	1.35
6077413--6077497	39	2.2	39	85	4	109	56	2	7	34	1.39
6077658--6077730	23	3.1	23	72	18	69	58	2	0	38	1.12
6077556--6077739	75	2.4	76	79	9	209	55	4	2	36	1.35
6083617--6083651	6	5.8	6	96	0	52	0	42	34	22	1.54
6084607--6084715	39	3.0	39	77	22	155	16	35	2	44	1.62
6084631--6084692	30	2.1	30	100	0	124	19	30	3	46	1.65
6087617--6087667	24	2.1	24	100	0	102	43	19	15	21	1.88
6087785--6087921	30	4.6	30	77	5	109	41	6	1	50	1.37
6087934--6087999	29	2.2	30	86	7	91	51	1	4	42	1.31
6094248--6094457	50	4.2	49	77	11	205	45	3	5	45	1.43
6094536--6094581	21	2.1	21	84	8	56	45	6	0	47	1.28
6094789--6094839	21	2.5	20	78	9	57	33	3	3	58	1.35
6095344--6095394	26	1.9	27	84	4	68	56	1	3	37	1.29
6095388--6095430	14	3.0	14	82	3	50	62	9	0	27	1.25
6095973--6096035	30	2.1	30	82	5	74	41	6	11	41	1.66
6098205--6098241	18	2.1	18	89	0	56	35	8	24	32	1.85
6099939--6099973	2	17.5	2	93	0	61	51	0	2	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6104374--6104414	3	13.7	3	84	0	55	0	29	36	34	1.58
6104671--6104728	28	2.1	27	84	9	73	0	5	27	67	1.12
6109015--6109056	20	2.1	20	82	8	50	69	0	4	26	1.08
6109378--6109413	9	4.1	9	85	7	56	19	8	2	69	1.27
6109641--6109681	22	1.9	21	85	5	55	53	7	2	36	1.42
6111455--6111524	34	2.1	34	97	0	131	55	11	7	25	1.60
6113002--6113072	35	2.0	35	97	0	133	23	16	9	49	1.76
6121852--6121959	56	1.9	56	96	0	198	25	12	16	44	1.84
6123398--6123494	47	2.1	46	94	1	167	29	9	10	50	1.67
6135514--6135560	21	2.2	21	85	7	60	53	2	0	44	1.12
6137205--6137244	20	2.2	19	86	13	57	67	5	5	22	1.30
6137357--6137396	19	2.1	19	95	0	71	25	15	12	47	1.80
6142206--6142240	17	2.1	17	89	10	54	62	0	0	37	0.95
6146789--6146831	12	3.6	12	83	0	50	39	0	41	18	1.51
6149149--6149189	21	2.0	21	90	0	64	39	2	43	14	1.59
6153223--6153640	137	3.2	133	82	7	451	32	14	9	44	1.76
6153245--6153592	71	5.1	69	70	16	251	31	14	8	45	1.74
6153521--6153741	101	2.2	102	84	4	275	35	14	9	41	1.77
6169309--6169354	21	2.2	21	81	14	51	41	2	0	56	1.11
6173917--6173988	33	2.2	33	87	0	99	40	33	9	16	1.81
6174017--6174120	45	2.3	45	83	0	136	31	50	1	16	1.56
6177354--6177379	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6183192--6183252	32	1.9	32	83	6	79	11	3	18	67	1.35
6183281--6183324	11	3.9	11	88	11	63	13	0	29	56	1.38
6186574--6186606	15	2.1	16	94	5	59	30	12	0	57	1.35
6187170--6187382	16	13.4	16	73	11	111	21	2	26	49	1.63
6187293--6187350	15	3.8	15	88	6	73	18	0	25	55	1.43
6187293--6187513	23	9.4	23	70	14	80	23	3	23	49	1.64
6187357--6187454	31	3.2	30	72	12	83	25	5	20	48	1.69
6187244--6187444	72	2.8	73	81	5	225	23	2	23	50	1.61
6187237--6187476	8	30.5	8	69	14	133	23	2	23	50	1.61
6188649--6188684	19	1.9	19	88	5	56	0	27	0	72	0.85
6190519--6190700	35	5.2	35	70	4	125	48	12	18	20	1.79
6192139--6192197	27	2.1	28	81	9	68	10	10	5	74	1.20
6192189--6192227	5	7.8	5	85	0	51	7	0	10	82	0.86
6192152--6192227	15	4.9	15	78	12	73	7	5	9	77	1.11
6192152--6192227	10	7.4	10	77	11	64	7	5	9	77	1.11
6194547--6194577	16	1.9	16	93	0	53	48	19	0	32	1.49
6205071--6205105	15	2.2	16	95	5	63	28	11	0	60	1.32
6205749--6205832	8	10.5	8	73	10	64	25	2	21	51	1.60
6205749--6205801	17	3.2	17	86	2	63	24	1	20	52	1.56
6205727--6205848	56	2.2	55	85	7	160	22	1	22	52	1.56
6205782--6205861	39	2.1	39	90	0	124	21	2	25	51	1.60
6206648--6206675	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6215885--6215928	24	2.0	21	86	13	61	50	0	0	50	1.00
6215924--6215956	16	2.0	17	88	5	50	57	0	0	42	0.98
6216227--6216271	19	2.4	18	82	10	54	15	6	6	71	1.29
6218338--6218391	27	2.0	27	82	7	65	61	7	1	29	1.34
6221562--6221622	28	2.2	28	90	0	95	22	6	14	55	1.62
6246721--6246827	52	2.1	52	87	3	153	38	9	26	26	1.86
6247707--6247737	11	2.8	11	100	0	62	19	0	29	51	1.47
6247762--6247918	52	3.0	51	87	3	206	40	9	25	24	1.85
6248929--6249032	33	3.2	33	80	9	106	50	5	4	39	1.48
6249127--6249231	34	3.1	33	74	8	95	44	1	1	51	1.23
6249138--6249231	34	2.8	34	79	9	111	45	1	1	52	1.15
6253873--6253907	17	2.0	18	88	5	54	25	8	31	34	1.86
6257258--6257290	16	2.1	17	88	11	52	81	0	3	15	0.80
6258522--6258551	2	15.0	2	100	0	60	50	0	0	50	1.00
6264476--6264557	19	4.8	16	74	21	76	74	0	15	9	1.07
6264480--6264557	35	2.2	35	90	4	122	73	0	16	10	1.10
6264483--6264548	18	3.6	19	74	15	68	72	0	16	10	1.11
6264505--6264553	24	2.0	24	88	0	71	77	0	14	8	0.98
6266363--6266410	18	2.6	19	80	6	62	33	12	4	50	1.59
6266408--6266476	18	3.8	19	74	16	74	27	11	14	46	1.79
6266434--6266492	25	2.2	27	85	8	77	30	10	11	47	1.73
6266543--6266625	19	4.5	19	76	7	82	27	10	12	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6266515--6266624	55	2.0	55	85	7	152	28	11	11	48	1.75
6266594--6266676	33	2.5	33	80	9	98	33	14	10	40	1.81
6266607--6266663	16	3.5	16	73	20	55	38	14	10	36	1.80
6266562--6266909	36	9.8	36	71	13	172	29	14	12	43	1.82
6266570--6266814	88	2.8	87	82	4	282	31	14	12	42	1.83
6266520--6266853	18	18.9	18	69	14	108	30	13	11	44	1.79
6266485--6266758	140	2.0	138	82	6	331	31	13	12	42	1.81
6266654--6266909	70	3.6	72	80	11	233	28	14	13	43	1.83
6267018--6267115	22	4.6	21	70	18	60	32	9	13	44	1.75
6276131--6276260	52	2.5	52	82	7	140	47	7	16	27	1.74
6276164--6276287	52	2.4	52	82	8	155	40	7	20	32	1.80
6276865--6276912	25	1.9	25	82	0	60	35	6	31	27	1.82
6277225--6277345	52	2.3	52	92	1	197	42	5	21	29	1.76
6291574--6291681	56	1.9	56	96	0	198	32	16	25	25	1.96
6292873--6292961	28	3.1	28	69	16	67	48	1	1	49	1.16
6295748--6295796	18	2.6	18	87	6	62	61	0	0	38	0.96
6296810--6296964	75	2.1	76	97	1	294	25	21	9	43	1.82
6297363--6297419	6	9.5	6	80	0	60	49	31	17	1	1.57
6301870--6301900	2	15.5	2	100	0	62	51	0	0	48	1.00
6304741--6304799	22	2.7	21	79	7	64	30	11	25	32	1.92
6304762--6304808	22	2.1	22	88	0	67	25	17	21	36	1.94
6307023--6307098	30	2.5	30	82	4	91	13	18	26	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311255--6311893	114	5.7	113	75	6	445	24	26	14	35	1.93
6311364--6311869	221	2.3	221	79	5	550	24	26	14	34	1.94
6312218--6312381	3	55.0	3	77	12	151	32	4	2	60	1.29
6312190--6312381	9	21.2	9	75	13	155	31	4	3	60	1.31
6312160--6312381	12	20.1	11	72	17	115	31	4	3	59	1.34
6313086--6313141	25	2.2	26	79	20	66	16	10	3	69	1.30
6314181--6314221	18	2.3	18	87	8	57	70	2	4	21	1.18
6317061--6317178	60	2.0	60	91	0	191	35	16	4	44	1.67
6318174--6318206	15	2.2	15	100	0	66	30	12	33	24	1.91
6328137--6328165	15	1.9	15	100	0	58	48	13	0	37	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133