genome.fa.s645.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  56  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11546759--11546875	6	18.3	6	70	18	51	21	1	32	44	1.62
11546939--11546980	21	2.0	20	86	4	57	14	4	38	42	1.66
11546947--11547006	27	2.2	26	88	8	93	11	3	40	45	1.57
11546976--11547013	19	2.0	20	89	5	60	10	7	39	42	1.69
11551395--11551461	29	2.4	28	80	5	73	55	5	7	31	1.52
11552882--11552937	24	2.3	24	84	0	76	53	10	12	23	1.69
11559192--11559218	13	2.1	13	100	0	54	22	7	7	62	1.46
11560313--11561563	478	2.6	483	80	5	1250	32	9	15	42	1.78
11560351--11561554	322	3.8	322	77	6	1093	33	9	14	42	1.78
11560321--11561554	162	7.7	162	77	6	1030	32	9	14	42	1.78
11562022--11562060	13	2.8	13	81	11	51	38	23	5	33	1.77
11562117--11562167	21	2.4	21	87	6	68	41	11	25	21	1.87
11562134--11562177	21	2.1	21	86	0	61	40	11	29	18	1.85
11564553--11564623	29	2.4	29	83	2	79	16	2	40	39	1.64
11564572--11564694	51	2.5	50	84	5	160	14	3	39	42	1.62
11564657--11564811	19	8.1	19	74	9	127	19	2	34	43	1.65
11564704--11564805	38	2.7	38	93	0	168	19	3	34	42	1.70
11564780--11564895	52	2.3	51	80	7	128	18	3	32	45	1.66
11566301--11566749	144	3.1	141	76	10	428	44	13	9	32	1.75
11566290--11566806	144	3.6	143	76	10	405	44	12	9	33	1.75
11567984--11568020	16	2.3	16	100	0	74	40	13	18	27	1.88
11570280--11570330	16	3.1	17	76	21	54	11	7	0	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571347--11571399	25	2.2	24	83	9	65	58	16	1	22	1.48
11575015--11575088	29	2.5	30	82	4	87	22	2	35	39	1.69
11580540--11580602	3	21.0	3	100	0	126	33	0	0	66	0.92
11581041--11581068	2	14.0	2	100	0	56	0	50	0	50	1.00
11586607--11586632	10	2.6	10	100	0	52	7	7	0	84	0.77
11586589--11586635	19	2.6	19	80	10	53	12	8	2	76	1.09
11590295--11590329	4	8.8	4	87	12	54	77	0	0	22	0.78
11592396--11592435	19	2.0	20	85	4	55	45	2	0	52	1.14
11597710--11597757	18	2.7	18	93	0	78	29	10	12	47	1.74
11603079--11603125	22	2.1	22	100	0	94	42	4	0	53	1.20
11607494--11607544	22	2.4	22	80	3	59	50	13	1	33	1.53
11608594--11608624	2	15.5	2	93	0	53	54	0	45	0	0.99
11614083--11614141	17	3.2	17	73	17	64	18	32	11	37	1.87
11617731--11617765	16	2.1	17	94	5	63	62	0	0	37	0.95
11617726--11617767	16	2.7	15	85	10	57	64	2	0	33	1.07
11622188--11622251	7	9.3	7	77	8	51	56	9	14	20	1.65
11624594--11624643	12	4.2	12	86	0	55	68	14	0	18	1.22
11624819--11624895	39	2.0	38	82	7	93	54	16	7	20	1.67
11624878--11624934	19	2.9	19	81	2	69	47	21	12	19	1.81
11634840--11634879	17	2.4	17	86	0	53	42	0	0	57	0.98
11634849--11634904	25	2.2	25	84	9	69	42	1	0	55	1.10
11642318--11642417	49	2.0	49	100	0	200	42	8	10	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11649264--11649321	17	3.4	17	79	11	64	18	5	1	74	1.10
11650259--11650299	12	3.2	13	80	19	50	63	0	34	2	1.08
11658478--11658548	36	2.0	36	88	5	108	49	0	1	49	1.09
11658478--11658564	36	2.4	34	79	11	86	49	0	2	48	1.13
11658729--11658792	21	3.2	21	66	30	50	50	1	1	46	1.20
11658885--11658927	13	3.3	13	80	0	50	51	0	0	48	1.00
11662911--11662955	22	2.0	22	95	0	81	42	15	13	28	1.85
11663712--11663765	28	2.0	28	85	10	76	66	12	7	12	1.43
11670156--11670204	19	2.6	19	73	0	53	14	0	42	42	1.45
11670267--11670308	17	2.5	17	88	7	59	21	7	28	42	1.79
11672350--11672397	20	2.4	19	76	10	51	29	10	14	45	1.78
11673287--11673331	21	2.1	21	84	8	56	53	0	4	42	1.21
11673949--11673990	22	1.9	22	90	0	66	50	0	0	50	1.00
11674119--11674167	23	2.1	24	85	11	66	53	14	8	24	1.68
11679304--11679335	15	2.1	15	94	0	55	21	18	31	28	1.97
11679845--11679878	16	2.1	17	88	5	52	38	11	0	50	1.39
11680734--11680772	19	2.1	19	90	4	62	35	2	5	56	1.35
11680869--11680906	3	12.7	3	100	0	76	31	0	0	68	0.90
11682076--11682106	12	2.7	12	95	5	55	67	0	25	6	1.14
11683004--11683042	19	2.1	19	95	0	69	33	7	15	43	1.75
11684801--11684844	6	7.3	6	80	19	56	45	0	0	54	0.99
11684804--11684844	11	4.0	11	75	18	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11684796--11684844	19	2.7	18	90	9	73	46	0	0	53	1.00
11690384--11690507	59	2.1	60	90	1	196	39	11	7	41	1.69
11691270--11691309	19	2.1	19	90	0	62	80	5	2	12	0.98
11691261--11691308	5	9.6	5	84	6	62	79	4	2	14	0.98
11692179--11692211	3	11.3	3	87	6	50	63	0	3	33	1.10
11692357--11692474	38	3.1	38	83	0	155	34	17	23	23	1.96
11692703--11693025	119	2.7	118	80	3	326	45	15	20	18	1.86
11693450--11693502	21	2.5	21	81	3	61	32	16	16	33	1.92
11695017--11695372	179	2.0	179	87	1	516	28	19	13	39	1.89
11704600--11704638	18	2.2	18	85	0	51	79	7	2	10	1.02
11705679--11705771	38	2.4	38	85	0	123	26	21	30	21	1.98
11706940--11707332	129	3.0	129	60	24	282	33	12	10	44	1.76
11706666--11707438	258	3.0	258	98	0	1465	33	12	10	43	1.76
11716412--11716662	72	3.5	69	82	5	261	43	7	9	38	1.67
11716415--11716757	71	4.8	71	79	9	322	45	8	9	37	1.66
11716415--11716757	142	2.4	141	81	5	370	45	8	9	37	1.66
11717094--11717141	16	2.8	17	81	9	62	27	33	0	39	1.57
11720850--11720876	14	1.9	14	100	0	54	22	7	18	51	1.70
11721115--11721164	26	2.0	25	84	4	64	22	26	12	40	1.88
11723446--11723471	12	2.2	12	100	0	52	7	26	23	42	1.81
11724554--11724601	20	2.5	20	89	3	71	37	10	18	33	1.85
11735206--11735276	35	2.0	35	94	0	124	29	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11736288--11736415	65	2.0	65	90	0	202	53	16	13	17	1.74
11742692--11742827	28	4.8	28	85	1	164	47	25	4	22	1.69
11743705--11744247	240	2.3	239	83	2	678	41	12	11	34	1.79
11744067--11744462	187	2.1	187	82	5	480	40	12	11	35	1.80
11743826--11744651	425	1.9	426	82	2	1032	40	12	11	35	1.79
11744254--11744684	237	1.8	238	82	3	555	40	12	11	36	1.78
11746549--11746618	36	2.0	36	94	2	124	32	5	12	48	1.65
11748357--11748424	31	2.2	31	86	5	93	39	14	10	35	1.80
11748587--11748638	6	8.3	7	95	2	53	32	0	1	65	1.04
11748594--11748643	3	16.7	3	91	8	84	32	0	0	68	0.90
11749104--11749473	50	7.4	52	71	13	188	27	14	13	45	1.82
11749244--11749479	106	2.3	102	84	5	287	30	13	11	44	1.80
11749244--11749478	54	4.5	53	77	10	234	29	14	11	44	1.80
11752847--11752888	16	2.6	16	78	10	50	28	4	2	64	1.26
11752908--11753284	196	1.9	197	80	10	432	37	10	7	45	1.65
11753351--11753377	5	5.4	5	100	0	54	81	0	0	18	0.69
11754169--11754204	19	1.9	18	88	5	54	19	5	0	75	1.00
11757660--11757718	12	4.8	12	70	4	55	20	1	5	72	1.12
11757663--11757695	16	2.0	16	94	5	57	15	0	6	78	0.93
11762168--11762263	9	10.8	9	80	10	108	72	2	13	11	1.20
11763394--11763445	21	2.5	21	96	0	95	38	3	13	44	1.62
11763460--11763501	14	3.0	14	85	0	57	40	9	19	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11764027--11764129	16	6.5	16	67	9	50	37	11	8	41	1.73
11764269--11764318	17	2.8	18	80	14	59	24	12	12	52	1.72
11764518--11764610	21	4.5	21	73	15	77	32	9	15	43	1.79
11764530--11764611	20	4.0	20	76	9	76	31	8	17	42	1.79
11765557--11765591	8	4.2	8	88	3	52	14	0	2	82	0.77
11765911--11765992	43	1.9	42	82	7	103	39	10	12	37	1.78
11768927--11768953	10	2.7	10	100	0	54	37	0	11	51	1.37
11773330--11774606	161	7.9	160	82	3	1337	41	15	10	33	1.81
11773329--11774606	322	4.0	321	83	2	1474	41	15	10	33	1.81
11780462--11780532	34	2.1	34	89	0	106	42	16	18	22	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133