genome.fa.s645.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  19  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590747--4590925	49	3.6	49	87	2	252	38	17	12	31	1.87
4590619--4590874	129	2.0	126	90	2	395	39	19	10	29	1.86
4590745--4590925	98	1.8	99	90	3	294	38	18	12	31	1.87
4591109--4591470	75	4.8	75	79	2	368	40	21	13	24	1.90
4591107--4591470	150	2.4	149	83	3	462	40	21	13	24	1.89
4591350--4591581	42	5.9	40	67	17	123	42	24	12	20	1.86
4591359--4591589	117	2.0	116	87	3	329	42	24	12	20	1.86
4591259--4591664	192	2.1	192	85	1	537	41	22	13	22	1.89
4591453--4591731	75	3.7	75	84	4	348	40	23	15	21	1.91
4591528--4591854	42	8.2	42	71	14	219	40	22	14	23	1.90
4591208--4591773	267	2.1	267	87	1	796	40	22	13	22	1.90
4591691--4591854	42	3.9	42	87	3	240	39	21	13	25	1.90
4593108--4593146	16	2.4	16	91	4	60	7	10	0	82	0.86
4599371--4599403	14	2.3	15	89	5	50	81	0	0	18	0.68
4603180--4603234	28	2.0	28	85	7	76	60	3	1	34	1.25
4603262--4603317	29	1.9	29	82	7	69	33	3	5	57	1.39
4605114--4605144	2	16.0	2	93	6	55	51	0	0	48	1.00
4620847--4620876	2	15.0	2	100	0	60	50	0	0	50	1.00
4622336--4622395	28	2.1	28	84	0	75	30	0	20	50	1.49
4622390--4622483	12	7.7	12	70	9	64	22	9	25	42	1.83
4626802--4626934	63	2.1	63	80	8	155	33	17	9	39	1.82
4633463--4633491	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4637094--4637216	30	4.1	28	79	15	106	43	0	1	54	1.15
4637094--4637216	58	2.1	60	83	10	155	43	0	1	54	1.15
4637140--4637216	31	2.5	30	87	2	109	46	1	0	51	1.09
4639499--4639571	36	2.0	36	97	0	137	23	2	24	49	1.63
4640265--4640426	80	2.0	79	96	1	297	41	10	22	25	1.86
4677175--4677213	20	1.9	21	89	5	62	20	2	7	69	1.26
4689329--4689406	38	2.1	38	92	0	129	34	6	32	26	1.82
4689568--4689613	24	2.0	22	83	8	56	45	4	0	50	1.21
4696872--4697090	85	2.4	89	87	8	295	51	7	5	35	1.54
4704831--4704897	23	2.9	22	77	18	57	65	5	1	26	1.24
4704871--4704973	45	2.4	44	80	15	108	57	1	4	35	1.31
4704895--4704951	24	2.2	26	82	17	75	56	1	7	35	1.37
4705050--4705080	16	1.9	16	93	0	53	45	0	0	54	0.99
4707334--4707377	21	2.3	19	85	14	63	65	0	0	34	0.93
4712918--4712951	16	2.1	17	88	5	52	8	5	14	70	1.31
4713069--4713115	19	2.5	20	86	10	71	4	10	4	80	0.98
4713059--4713114	25	2.3	24	81	6	60	1	14	3	80	0.93
4716865--4716964	52	2.0	50	90	7	157	58	9	6	27	1.52
4719442--4719469	12	2.3	12	100	0	56	25	28	0	46	1.53
4720638--4720689	21	2.5	21	93	3	88	50	1	0	48	1.12
4723391--4723415	10	2.5	10	100	0	50	80	0	20	0	0.72
4725487--4725526	21	1.9	20	85	10	53	57	7	0	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4727535--4727617	40	2.1	40	86	4	114	24	14	12	49	1.77
4729074--4729103	2	15.0	2	100	0	60	50	0	0	50	1.00
4733956--4733987	5	6.4	5	92	0	55	62	34	0	3	1.11
4734489--4734533	21	2.1	21	100	0	90	33	8	26	31	1.87
4736710--4736802	43	2.2	43	86	3	125	37	8	18	35	1.81
4739695--4739771	38	2.0	38	87	0	109	25	25	6	41	1.79
4741148--4741192	22	2.0	22	91	0	72	22	6	20	51	1.70
4744397--4744444	25	1.9	25	83	8	62	60	4	4	31	1.35
4746329--4746435	37	2.9	37	90	2	173	36	14	17	31	1.90
4746577--4746648	37	1.9	37	94	0	126	36	15	15	33	1.89
4746364--4746794	213	2.0	213	95	0	772	29	11	21	37	1.89
4751927--4752033	56	1.9	54	81	10	128	38	8	6	46	1.60
4757297--4757334	15	2.5	15	88	12	60	39	0	2	57	1.12
4758795--4759495	209	3.4	201	78	5	681	40	9	12	37	1.76
4760203--4760230	12	2.3	12	100	0	56	21	0	0	78	0.75
4760203--4760235	14	2.5	14	90	9	52	21	0	0	78	0.75
4761756--4761806	14	3.8	14	77	12	54	76	0	0	23	0.79
4761983--4762761	46	17.0	46	90	2	1165	34	24	14	26	1.94
4761983--4762761	91	8.5	92	91	2	1165	34	24	14	26	1.94
4761983--4762761	137	5.7	137	91	1	1211	34	24	14	26	1.94
4764594--4764643	25	2.0	25	100	0	100	28	40	12	20	1.87
4772525--4772621	50	1.9	50	91	0	158	27	9	10	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4775901--4777056	583	2.0	585	87	3	1689	39	15	9	35	1.80
4786664--4786981	62	5.2	60	81	9	333	30	11	8	49	1.69
4786678--4786962	120	2.4	120	87	9	386	32	12	8	46	1.72
4787039--4787109	28	2.6	27	84	10	83	78	2	2	15	0.98
4787053--4787097	14	3.3	14	81	3	56	75	4	4	15	1.12
4787129--4787154	5	5.2	5	100	0	52	0	42	38	19	1.51
4794494--4794708	80	2.7	79	80	5	236	25	7	26	40	1.82
4797775--4798356	305	1.9	299	82	3	709	37	14	14	34	1.86
4809286--4809428	50	2.8	50	82	6	162	44	4	10	39	1.60
4809177--4809410	103	2.3	106	82	4	282	45	4	10	40	1.58
4809215--4809477	48	5.2	49	75	11	203	43	4	10	41	1.60
4809456--4809488	17	1.9	17	88	11	50	36	9	0	54	1.32
4813947--4813996	3	16.7	3	100	0	100	32	0	0	68	0.90
4826086--4826215	56	2.3	56	81	2	154	16	20	18	43	1.88
4825990--4826325	174	1.9	173	82	1	413	17	19	17	45	1.86
4826163--4826637	118	4.0	117	78	3	427	18	21	15	44	1.86
4827372--4827414	3	14.3	3	100	0	86	67	0	0	32	0.91
4829993--4830175	91	2.0	91	96	0	339	27	14	18	39	1.89
4830098--4830479	134	2.8	133	83	2	469	25	14	20	38	1.92
4840343--4840540	79	2.5	79	78	8	197	26	8	24	40	1.83
4851574--4851658	37	2.3	37	97	0	161	24	11	8	55	1.63
4854499--4854543	16	2.9	16	90	3	65	64	0	20	15	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4855730--4855801	21	3.3	22	86	9	103	40	4	16	38	1.68
4856160--4856207	18	2.6	18	80	12	53	33	12	10	43	1.77
4856297--4856327	16	1.9	16	93	0	53	25	12	12	48	1.77
4856394--4856472	17	4.7	16	75	10	77	30	7	16	45	1.75
4856431--4856484	17	3.2	17	82	7	65	31	12	14	40	1.84
4856411--4856500	34	2.6	34	74	10	85	33	8	17	40	1.81
4856517--4856555	18	2.2	18	90	0	60	43	15	10	30	1.80
4860241--4860295	27	2.0	27	92	0	92	43	14	5	36	1.69
4860565--4860608	2	22.0	2	90	0	61	50	6	0	43	1.29
4863600--4863664	9	7.1	9	85	3	76	23	0	7	69	1.14
4863595--4863655	3	20.3	3	86	0	68	22	0	8	68	1.15
4864505--4864605	53	1.9	53	89	0	157	25	17	5	50	1.69
4865464--4865551	44	2.0	44	80	12	101	48	10	5	35	1.61
4865494--4865916	52	7.8	56	67	18	135	47	6	9	35	1.63
4865723--4865916	58	3.5	54	76	9	189	47	7	10	34	1.66
4865726--4865930	110	1.9	108	88	8	308	46	6	9	36	1.64
4865943--4866074	51	2.6	50	83	7	158	41	8	9	40	1.68
4875917--4875972	25	2.2	25	81	9	60	42	5	5	46	1.49
4877174--4877726	43	12.8	43	81	3	520	45	18	13	23	1.84
4877262--4877686	128	3.3	127	86	4	557	44	18	13	23	1.85
4878200--4878307	44	2.5	44	78	7	112	38	19	10	31	1.85
4878183--4878405	108	2.1	109	85	0	295	37	17	10	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4879625--4879684	24	2.6	22	89	5	84	6	15	0	78	0.95
4879628--4879689	12	5.2	12	75	9	65	8	12	0	79	0.94
4879665--4879696	17	1.9	16	93	6	55	9	6	0	84	0.78
4879658--4879701	21	2.1	21	82	0	52	9	11	0	79	0.93
4880071--4880109	19	2.1	19	85	0	51	2	7	5	84	0.84
4887309--4887339	14	2.2	14	94	0	53	83	6	6	3	0.88
4889112--4889207	43	2.2	45	85	9	126	33	11	15	39	1.83
4889572--4889628	15	3.9	15	71	17	57	28	12	17	42	1.85
4889737--4889975	85	2.8	85	83	9	297	27	12	14	45	1.81
4889694--4890058	43	8.5	44	79	5	286	26	12	16	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133