genome.fa.s645.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  69  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13495942--13496011	25	3.0	24	71	12	65	41	0	1	57	1.08
13496820--13496863	17	2.5	17	82	14	54	52	2	0	45	1.13
13497013--13497076	16	4.0	16	72	8	58	53	0	1	45	1.10
13497481--13497556	16	5.2	14	67	25	50	51	1	0	47	1.09
13497478--13497562	30	2.8	30	70	25	72	49	1	0	49	1.08
13497461--13497568	18	5.7	19	67	26	68	48	0	0	50	1.13
13497973--13498049	27	3.0	26	75	9	68	50	1	0	48	1.09
13498623--13498680	11	5.4	11	75	20	52	50	3	1	44	1.29
13498796--13498830	16	2.3	15	90	5	52	54	2	5	37	1.39
13498964--13499002	14	2.9	14	88	7	55	53	0	0	46	1.00
13499553--13499627	29	2.5	29	79	12	82	53	1	1	44	1.17
13499512--13499647	17	8.3	15	69	20	78	50	0	1	47	1.15
13499705--13499738	16	2.1	17	88	5	52	44	0	0	55	0.99
13499757--13499817	22	2.9	21	83	13	65	52	0	0	47	1.00
13499786--13499826	12	3.4	13	77	19	52	58	0	0	41	0.98
13499783--13499828	17	2.8	17	80	12	60	58	0	0	41	0.98
13499782--13499828	14	3.4	14	80	14	62	57	0	0	42	0.98
13499907--13500551	176	3.6	175	82	4	697	39	9	7	43	1.67
13501499--13501545	21	2.2	22	78	17	55	51	4	0	44	1.21
13501506--13501548	21	2.1	20	87	12	61	48	2	0	48	1.14
13501539--13501592	24	2.3	24	83	3	65	51	5	3	38	1.43
13501948--13501979	15	2.2	15	94	5	57	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13502206--13502280	37	2.0	40	84	12	104	44	2	1	52	1.23
13502214--13502289	37	2.1	35	80	14	82	46	2	1	50	1.24
13502760--13502838	27	3.0	26	76	8	72	49	1	0	49	1.09
13503412--13503469	11	5.4	11	75	20	52	50	3	1	44	1.29
13503586--13503620	16	2.3	15	90	5	52	54	2	5	37	1.39
13504319--13504343	10	2.5	10	100	0	50	52	0	0	48	1.00
13504404--13504463	26	2.3	26	83	11	70	41	0	1	56	1.09
13504596--13504633	17	2.1	18	90	9	60	60	0	0	39	0.97
13504591--13504633	14	3.1	14	80	12	54	60	0	0	39	0.97
13504590--13504633	19	2.3	20	92	7	74	59	0	0	40	0.98
13504617--13505860	181	7.0	179	79	5	1052	40	10	8	40	1.70
13504896--13505860	533	1.8	531	78	8	1105	39	11	8	40	1.72
13506153--13506185	11	2.9	12	86	13	52	60	0	0	39	0.97
13506267--13506313	21	2.2	22	78	17	55	51	4	0	44	1.21
13506274--13506316	21	2.1	20	87	12	61	48	2	0	48	1.14
13506307--13506360	24	2.3	24	83	3	65	51	5	3	38	1.43
13506676--13506738	15	4.4	14	82	13	67	44	1	1	52	1.20
13507001--13507033	16	2.1	16	88	11	50	57	0	0	42	0.98
13507027--13507098	14	5.4	14	75	15	73	50	1	1	47	1.18
13506998--13507106	17	6.2	17	70	17	64	52	0	0	45	1.13
13507143--13507185	16	2.6	16	88	3	59	44	0	2	53	1.13
13507798--13508089	157	1.9	157	81	1	361	37	10	9	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13507955--13508306	182	1.9	180	85	5	478	44	10	7	38	1.67
13508367--13509530	361	3.2	355	76	8	1036	41	10	8	39	1.70
13508345--13509508	180	6.5	178	75	8	884	41	10	8	39	1.69
13509695--13509749	20	2.8	20	71	15	53	52	0	0	47	1.00
13510494--13510537	18	2.2	20	80	15	56	56	0	0	43	0.99
13510723--13510785	25	2.4	27	77	15	71	50	0	1	47	1.10
13510751--13510789	15	2.5	16	83	8	53	53	0	0	46	1.00
13510910--13510952	22	2.0	22	90	9	70	53	4	2	39	1.34
13511117--13511174	17	3.5	17	75	15	59	46	0	0	53	1.00
13511198--13511265	16	4.1	16	75	20	68	45	2	1	50	1.26
13511172--13511258	8	10.6	8	77	18	65	43	2	2	51	1.26
13511373--13511416	23	1.9	23	86	9	63	40	2	2	54	1.25
13511958--13511997	15	2.6	16	84	15	57	52	0	2	45	1.14
13512169--13512203	17	2.1	16	89	5	52	54	0	0	45	0.99
13513303--13513406	19	5.7	18	69	17	63	43	1	4	50	1.34
13513303--13513357	18	2.9	19	81	5	58	40	1	1	56	1.21
13513374--13513439	27	2.4	28	82	14	75	46	0	3	50	1.16
13513423--13513488	25	2.6	25	73	7	62	43	1	4	50	1.32
13513629--13513671	18	2.3	18	84	15	61	37	0	0	62	0.95
13513634--13513671	6	6.3	6	90	9	60	36	0	0	63	0.95
13513740--13514114	179	2.1	180	78	6	395	38	6	9	46	1.62
13514195--13514228	13	2.5	13	90	4	50	55	0	2	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13514171--13514250	20	4.0	20	76	9	63	58	3	1	36	1.24
13515300--13515466	59	2.9	57	84	7	219	38	10	3	47	1.55
13515475--13515507	17	2.1	17	88	11	52	15	0	15	69	1.19
13515910--13515969	3	20.0	3	88	6	86	30	3	0	66	1.07
13516263--13516369	3	35.0	3	86	7	144	64	1	3	29	1.21
13517167--13517243	29	2.6	30	81	10	95	64	1	2	31	1.15
13517185--13517243	26	2.3	26	85	5	75	66	1	1	30	1.12
13517162--13517230	3	21.7	3	80	16	77	63	0	2	33	1.09
13517331--13517370	19	2.1	19	100	0	80	32	22	20	25	1.98
13517510--13517910	180	2.2	178	80	6	447	43	6	9	39	1.65
13517714--13517746	18	1.9	17	88	11	50	48	6	6	39	1.53
13518236--13518278	13	3.0	14	80	13	52	58	4	0	37	1.19
13518233--13518280	13	3.6	13	77	2	51	56	4	0	39	1.19
13518956--13519000	20	2.2	20	84	7	56	46	2	2	48	1.26
13519486--13520056	181	3.2	181	81	4	654	40	8	9	41	1.68
13520248--13520272	4	6.2	4	100	0	50	48	0	0	52	1.00
13520296--13520329	16	2.3	15	90	10	52	52	8	0	38	1.33
13521062--13521091	9	3.2	9	95	4	51	53	3	0	43	1.17
13521301--13521325	8	3.1	8	100	0	50	36	0	0	64	0.94
13521466--13521546	25	3.4	24	79	14	69	44	2	1	51	1.22
13521475--13521513	16	2.4	16	83	12	53	51	2	0	46	1.14
13522128--13522180	19	2.9	19	78	15	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522691--13522743	18	2.9	19	88	5	67	54	0	0	45	0.99
13522703--13522750	25	1.9	25	91	0	78	54	0	0	45	0.99
13522843--13522892	14	3.8	14	76	12	52	50	0	0	50	1.00
13522850--13522913	28	2.2	28	81	13	69	46	1	0	51	1.10
13523390--13523435	24	1.9	23	83	16	58	43	2	2	52	1.25
13523468--13523525	21	2.8	21	82	10	75	39	0	1	58	1.08
13523460--13523531	17	3.5	21	67	27	55	40	0	1	58	1.07
13523550--13523591	19	2.2	20	86	4	59	38	0	4	57	1.20
13524601--13524716	20	5.9	19	70	20	71	50	2	0	46	1.15
13524655--13524690	13	2.8	13	91	0	54	52	0	0	47	1.00
13524639--13524742	53	1.9	54	83	16	135	51	1	0	45	1.18
13534113--13534454	171	2.0	171	99	0	675	32	15	29	23	1.95
13536913--13537015	45	2.3	44	80	6	118	30	18	28	23	1.98
13537537--13537588	21	2.5	21	87	0	77	17	15	30	36	1.91
13537902--13537957	22	2.5	22	88	0	76	30	16	30	23	1.96
13541852--13542965	502	2.2	500	80	6	1205	28	17	27	25	1.98
13543186--13543551	182	2.0	182	94	0	642	28	18	29	23	1.98
13554818--13554933	45	2.6	45	77	0	124	28	12	30	28	1.94
13560742--13561010	134	2.0	134	94	0	466	27	20	17	33	1.96
13565424--13565463	21	1.9	21	89	0	62	22	15	37	25	1.93
13565430--13565474	21	2.1	21	83	0	54	24	22	31	22	1.99
13602262--13602357	47	2.0	47	82	4	113	38	27	17	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13612446--13612520	23	3.3	23	86	3	73	20	42	17	20	1.89
13620453--13620563	45	2.5	44	77	4	105	31	23	24	20	1.98
13620683--13620771	45	2.0	45	82	4	108	28	20	30	21	1.98
13633844--13633897	25	2.2	24	83	3	63	33	25	20	20	1.97
13638620--13638709	47	1.9	47	86	0	126	37	27	21	13	1.91
13639192--13639231	21	1.9	21	94	0	71	32	25	15	27	1.95
13645004--13645195	95	2.0	95	100	0	384	34	27	16	21	1.95
13695714--13695788	37	2.0	37	81	0	87	24	20	10	45	1.82
13700700--13700963	117	2.2	119	79	8	306	34	10	12	42	1.77
13706583--13706811	126	1.8	126	84	3	318	35	15	15	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133