genome.fa.s645.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  34  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7678606--7678699	47	2.0	47	83	6	118	55	7	9	27	1.59
7681208--7681263	24	2.3	24	96	0	103	7	19	17	55	1.65
7682675--7682732	26	2.2	27	84	6	75	51	0	0	48	1.00
7682685--7682739	26	2.2	26	93	3	94	47	0	0	52	1.00
7693767--7693799	17	2.0	17	88	5	50	57	6	6	30	1.47
7695433--7695474	16	2.6	16	84	0	57	42	16	4	35	1.69
7696063--7696106	21	2.0	22	91	4	72	52	2	0	45	1.13
7699963--7700053	16	5.6	16	76	1	74	58	18	2	20	1.50
7699931--7700037	48	2.2	47	77	6	106	54	16	1	27	1.53
7699958--7700043	32	2.7	32	81	1	100	54	20	1	23	1.51
7700481--7700533	25	2.2	24	86	10	72	50	5	0	43	1.25
7712078--7712123	22	2.1	22	84	8	58	63	2	6	28	1.31
7717523--7717578	22	2.7	22	86	8	73	48	0	0	51	1.00
7717554--7717578	13	1.9	13	100	0	50	56	0	0	44	0.99
7718474--7718505	2	16.0	2	100	0	64	50	0	0	50	1.00
7720429--7720472	19	2.2	20	84	4	54	36	0	13	50	1.42
7721884--7721914	12	2.6	12	100	0	62	0	12	54	32	1.38
7721870--7721917	12	3.6	14	78	18	50	2	8	56	33	1.41
7725245--7725289	18	2.6	17	80	13	56	73	4	4	17	1.17
7725510--7725635	42	3.0	42	80	4	105	42	18	11	26	1.85
7725537--7725654	42	2.8	42	79	2	130	45	18	9	26	1.79
7726093--7726153	21	2.8	22	87	5	97	37	14	9	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7731692--7731750	25	2.3	25	80	8	66	40	6	6	45	1.57
7731765--7731805	17	2.4	18	76	23	52	34	0	0	65	0.93
7732758--7732810	18	3.1	18	77	17	60	73	5	5	15	1.21
7733804--7733878	21	3.6	19	77	13	69	16	24	28	32	1.96
7740330--7740359	16	1.9	15	93	6	51	33	0	0	66	0.92
7741702--7741753	16	3.2	16	75	20	54	21	0	5	73	1.04
7741718--7741756	19	2.0	20	85	5	53	25	0	5	69	1.09
7742015--7742341	47	6.9	48	82	6	380	38	18	12	29	1.88
7742015--7742344	95	3.5	95	85	5	416	38	19	12	29	1.88
7742015--7742341	144	2.3	141	87	4	401	38	18	12	29	1.88
7749294--7749341	20	2.5	19	80	12	53	12	18	10	58	1.62
7754714--7754758	22	2.0	22	86	4	63	66	0	2	31	1.04
7756044--7756092	21	2.4	21	86	10	66	14	28	28	28	1.95
7757371--7757427	25	2.3	24	78	3	60	22	5	1	70	1.17
7760920--7761043	39	3.1	37	74	13	122	38	8	12	41	1.72
7760722--7761153	40	10.8	40	71	8	200	37	10	13	37	1.80
7761376--7761448	31	2.3	32	82	13	82	27	15	23	34	1.94
7762118--7762169	21	2.5	21	77	0	59	50	11	17	21	1.77
7767280--7767503	122	1.8	123	82	11	289	32	13	16	38	1.87
7767332--7767810	182	2.6	179	80	7	466	33	15	13	37	1.86
7767637--7767750	61	1.9	61	81	5	142	28	20	8	42	1.82
7770931--7770970	17	2.5	17	84	15	59	20	7	0	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7770933--7770972	16	2.7	14	82	14	53	22	5	0	72	1.04
7771250--7771307	12	4.5	13	77	10	57	22	3	0	74	0.97
7771250--7771285	14	2.8	12	84	15	54	16	2	0	80	0.83
7771596--7771627	12	2.5	13	95	5	57	25	3	6	65	1.31
7771665--7771732	35	1.9	37	82	8	88	57	7	7	27	1.53
7773474--7773518	23	2.0	23	86	0	63	37	6	17	37	1.76
7773550--7773801	59	4.5	54	77	14	215	38	10	4	46	1.59
7773550--7773763	118	1.8	115	85	6	297	37	10	5	46	1.60
7773748--7773781	11	3.1	11	91	0	50	55	0	2	41	1.15
7775785--7775819	18	1.9	18	94	0	61	40	17	11	31	1.85
7776176--7776255	41	2.0	41	85	5	108	43	16	8	31	1.78
7776367--7776416	21	2.3	23	86	6	68	40	10	8	42	1.68
7776359--7776416	21	2.7	22	78	10	66	39	10	6	43	1.66
7776693--7776748	24	2.3	24	93	0	94	44	21	14	19	1.86
7781618--7781871	59	4.4	57	78	11	245	37	9	6	46	1.64
7781618--7781930	59	5.6	56	75	14	200	37	8	6	47	1.60
7783275--7783312	13	2.9	14	84	7	53	13	15	7	63	1.51
7783528--7783552	4	6.2	4	100	0	50	76	0	0	24	0.80
7783842--7783893	25	2.1	24	83	16	63	7	23	9	59	1.54
7784828--7785277	59	7.6	58	77	14	413	36	13	5	44	1.68
7784827--7785265	116	3.7	120	80	11	407	36	13	5	44	1.68
7785301--7785366	5	13.8	5	80	17	63	78	0	1	19	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7785302--7785422	4	29.5	4	69	26	60	71	1	0	25	1.00
7785301--7785369	6	11.0	6	72	18	52	78	0	1	20	0.83
7785301--7785422	34	3.6	33	72	18	92	72	1	0	25	1.00
7785302--7785369	24	2.7	25	84	11	86	77	0	1	20	0.84
7785302--7785407	24	4.4	25	72	18	84	71	1	0	25	1.02
7785953--7785982	15	2.1	15	93	6	53	63	16	0	20	1.31
7786254--7786286	17	1.9	18	88	11	52	78	6	3	12	1.04
7786338--7786395	22	2.7	22	91	2	91	63	0	5	31	1.16
7786361--7786441	14	5.2	17	68	24	54	61	1	2	34	1.17
7786334--7786414	22	3.5	25	78	20	88	61	2	4	30	1.30
7786370--7786435	26	2.5	26	82	5	78	63	1	3	31	1.19
7786334--7786425	22	4.1	22	74	16	82	63	2	4	30	1.26
7786367--7786435	20	3.4	20	71	16	61	62	1	2	33	1.19
7786441--7786471	15	2.1	15	93	0	53	83	0	16	0	0.64
7786489--7786529	15	2.6	15	88	7	55	68	2	2	26	1.15
7786488--7786529	7	5.9	7	81	13	50	66	2	2	28	1.16
7786539--7786594	7	8.0	7	86	11	71	71	1	0	26	0.96
7786499--7786587	22	4.2	19	78	13	70	69	2	2	25	1.11
7786551--7786594	19	2.2	21	92	8	74	75	2	0	22	0.92
7786509--7786597	27	3.3	28	81	9	105	70	3	2	23	1.13
7786784--7786918	44	3.1	43	88	6	184	37	22	15	24	1.93
7787895--7787961	14	5.1	14	79	16	56	8	13	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7787917--7787958	14	2.9	14	89	3	57	9	14	0	76	1.02
7787906--7787964	22	2.8	20	80	12	64	8	13	0	77	0.97
7787891--7787980	40	2.2	42	78	11	107	7	17	0	74	1.05
7798390--7798726	60	5.7	60	82	9	383	36	13	7	43	1.71
7798756--7798838	4	20.5	4	70	20	57	68	2	0	28	1.02
7799710--7799802	20	4.4	20	77	9	80	62	3	7	26	1.38
7799753--7799813	22	2.9	21	83	7	79	63	0	6	29	1.19
7799767--7799843	26	3.1	25	78	14	79	61	1	5	32	1.26
7799900--7799941	7	5.9	7	81	13	50	66	2	2	28	1.16
7799952--7800014	7	8.9	7	88	10	92	69	1	0	28	0.97
7799952--7800017	27	2.4	26	87	12	89	71	1	0	27	0.95
7801936--7801979	22	2.0	22	90	0	70	43	13	9	34	1.76
7806730--7806780	25	2.0	25	100	0	102	45	15	7	31	1.75
7809372--7809399	13	2.2	13	100	0	56	92	0	7	0	0.37
7809773--7809833	25	2.5	24	78	5	61	73	14	3	8	1.19
7812730--7812786	23	2.5	23	86	11	73	70	1	5	22	1.17
7824482--7824659	52	3.5	50	82	3	185	33	11	15	39	1.84
7824520--7824666	52	2.9	51	83	5	190	33	10	16	39	1.83
7825619--7825679	21	2.9	20	75	4	59	65	21	0	13	1.26
7825621--7825673	24	2.2	24	87	9	74	69	18	0	11	1.17
7826662--7826692	12	2.7	11	90	9	53	74	0	3	22	0.96
7826849--7826889	6	7.2	6	83	5	50	78	2	2	17	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7834595--7834806	56	3.8	56	70	7	142	33	12	19	34	1.89
7834718--7834846	57	2.3	56	80	6	145	33	13	18	34	1.90
7841320--7841380	16	4.0	15	80	14	63	77	1	3	18	0.99
7841319--7841381	32	2.0	31	81	9	74	76	1	3	19	1.01
7841841--7841880	21	2.0	21	85	9	57	55	5	0	40	1.22
7855396--7855556	81	2.0	81	96	0	295	33	23	11	31	1.90
7858031--7858068	19	2.0	19	100	0	76	42	5	26	26	1.76
7863842--7864130	59	5.0	59	72	13	217	33	10	6	49	1.63
7864035--7864074	14	2.7	15	80	11	55	40	5	0	55	1.22
7864192--7864232	3	14.0	3	94	5	75	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133