genome.fa.s645.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  57  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11782405--11782441	19	1.9	19	89	10	58	43	16	10	29	1.82
11785254--11787467	161	13.9	161	77	5	1679	42	14	9	33	1.78
11785263--11787412	321	6.8	321	76	7	1590	42	14	9	33	1.78
11791700--11791739	14	2.7	14	88	7	53	20	15	0	65	1.28
11796716--11796788	24	2.9	24	88	8	101	49	5	4	41	1.45
11805008--11805150	75	1.9	76	91	1	234	54	14	12	18	1.71
11815755--11815792	16	2.5	15	87	12	51	84	0	10	5	0.77
11815755--11815792	15	2.4	16	86	4	51	84	0	10	5	0.77
11835596--11835641	2	23.0	2	86	0	65	0	43	4	52	1.21
11836132--11836165	2	17.0	2	87	0	50	50	5	0	44	1.26
11837098--11837174	36	2.2	34	81	11	84	75	2	7	14	1.13
11842576--11842623	21	2.3	20	79	13	53	43	0	16	39	1.48
11847979--11848021	20	2.1	20	87	12	61	32	18	0	48	1.48
11860585--11860626	22	1.9	22	85	0	57	26	2	21	50	1.61
11864658--11864712	18	3.1	18	92	5	85	43	3	21	30	1.70
11864694--11865160	232	2.0	231	88	4	701	41	4	13	40	1.66
11872465--11872505	19	2.1	20	90	4	66	39	31	7	21	1.81
11872720--11872800	38	2.1	38	93	0	135	37	13	16	33	1.87
11875564--11875589	1	26.0	1	100	0	52	100	0	0	0	0.00
11875709--11875751	2	21.5	2	90	0	68	46	0	0	53	1.00
11882161--11882261	49	2.1	49	98	1	195	22	7	17	51	1.71
11882183--11882260	25	3.2	25	68	17	81	21	8	17	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11894319--11894373	18	2.9	19	78	10	60	3	5	7	83	0.89
11894631--11894656	13	2.0	13	100	0	52	30	0	15	53	1.42
11897289--11897334	22	2.1	22	91	0	74	45	15	13	26	1.82
11901087--11901136	26	2.0	26	84	7	68	14	0	40	46	1.44
11901310--11901447	20	6.9	20	77	3	134	13	1	32	52	1.50
11901358--11901414	27	2.1	27	83	6	71	17	0	31	50	1.46
11903761--11904158	51	7.9	52	75	5	305	37	14	11	36	1.81
11903762--11904158	101	3.9	101	78	6	365	37	13	11	37	1.81
11903761--11904209	151	3.0	152	78	5	324	38	14	11	36	1.82
11913224--11913279	15	3.9	14	71	17	51	75	0	1	23	0.90
11913212--11913262	21	2.5	19	81	12	57	74	0	5	19	1.02
11913230--11913271	10	3.6	11	82	17	50	76	0	2	21	0.90
11913232--11913331	30	3.3	28	72	13	83	71	0	4	25	1.04
11913432--11913483	24	2.1	26	82	13	65	67	13	9	9	1.42
11913910--11913950	22	1.9	22	90	5	66	78	9	7	4	1.10
11915185--11915296	50	2.2	51	88	1	181	45	7	14	33	1.72
11915185--11915322	50	2.8	49	83	7	131	48	5	11	34	1.63
11915296--11915379	32	2.7	32	79	5	82	64	0	4	30	1.14
11916802--11917028	114	2.0	111	86	6	316	32	6	7	54	1.53
11917367--11917426	29	2.1	28	81	12	68	16	1	10	71	1.21
11919721--11919754	3	11.3	3	93	0	59	64	2	0	32	1.08
11919753--11919796	3	14.7	3	95	0	79	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928082--11928184	35	2.9	35	76	2	91	20	12	11	55	1.68
11928834--11928910	21	3.8	20	68	16	52	66	2	1	29	1.13
11929068--11929407	168	2.0	168	100	0	680	41	17	21	19	1.90
11931282--11931333	12	4.2	12	78	7	50	50	23	5	21	1.70
11932583--11932853	141	1.9	140	86	0	380	26	26	16	29	1.97
11941531--11941586	15	3.7	15	72	11	51	58	1	1	37	1.19
11941817--11941858	22	1.9	22	85	0	57	23	2	2	71	1.10
11942673--11942723	17	3.1	16	75	13	50	19	9	0	70	1.14
11946698--11946723	12	2.2	12	100	0	52	92	0	7	0	0.39
11947915--11948117	37	5.8	37	70	14	126	33	25	7	33	1.85
11947971--11948033	32	2.0	32	87	0	90	33	26	6	33	1.82
11947947--11948119	69	2.5	68	82	8	201	32	26	7	32	1.84
11948036--11948097	32	1.9	32	90	6	99	32	27	11	29	1.91
11948153--11948225	32	2.3	31	83	6	92	16	16	8	58	1.60
11948333--11948453	31	3.8	31	72	6	107	23	21	10	44	1.83
11948315--11948624	65	4.7	64	81	4	291	23	20	10	44	1.83
11948431--11948618	34	5.7	34	67	16	108	25	19	11	44	1.83
11948315--11948624	130	2.4	130	81	4	356	23	20	10	44	1.83
11948405--11948499	31	3.0	31	70	17	77	24	24	8	43	1.81
11950612--11950691	38	2.1	36	86	6	106	46	12	11	30	1.77
11956046--11956298	7	38.3	7	68	16	89	47	35	1	15	1.57
11956046--11956102	20	3.0	20	71	7	55	45	38	0	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11956111--11956159	13	3.7	13	76	15	55	51	28	2	18	1.58
11956163--11956188	13	2.0	13	100	0	52	53	30	0	15	1.42
11956219--11956296	26	3.0	26	83	3	104	50	39	1	8	1.42
11957339--11957381	19	2.3	19	91	0	68	83	0	4	11	0.78
11957339--11957381	9	4.7	9	85	5	59	83	0	4	11	0.78
11957359--11957469	59	1.9	57	87	8	163	47	7	9	36	1.63
11957383--11957491	59	1.9	54	82	14	123	46	8	9	35	1.66
11968446--11968857	144	2.9	142	79	3	457	41	13	13	32	1.83
11969345--11969383	8	4.8	8	90	6	51	15	0	7	76	0.99
11969423--11969525	35	2.9	33	83	8	116	54	13	14	17	1.71
11969645--11969781	36	3.8	37	73	11	108	47	14	21	16	1.82
11969718--11969974	106	2.4	106	81	7	304	47	17	19	15	1.82
11969718--11969973	71	3.6	72	75	5	234	48	16	19	15	1.82
11969987--11970346	35	10.1	36	75	7	263	52	20	14	13	1.74
11969993--11970132	72	1.9	72	81	5	167	55	19	12	12	1.68
11971591--11971635	13	3.3	13	82	17	56	80	0	17	2	0.82
11971591--11971650	18	3.2	18	86	9	68	76	1	18	3	1.00
11972298--11972358	12	5.2	12	74	9	56	49	0	26	24	1.51
11972247--11972379	51	2.6	52	77	12	125	54	0	25	19	1.44
11972364--11972410	15	2.9	16	76	17	53	63	0	19	17	1.30
11972736--11972778	14	3.6	12	85	14	54	83	9	6	0	0.80
11972738--11972776	13	2.9	13	88	3	51	82	10	7	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11972808--11973011	50	4.1	50	81	8	236	36	12	14	36	1.84
11972808--11972993	100	1.9	100	87	4	277	36	12	14	37	1.84
11976219--11976472	115	2.2	115	89	1	384	31	24	16	27	1.96
11976445--11976623	74	2.4	72	81	5	198	36	21	17	25	1.94
11977760--11979690	967	2.0	967	95	0	3506	26	14	11	47	1.79
11981500--11981920	212	2.0	207	86	3	583	32	15	17	34	1.92
11983396--11983422	13	2.1	13	100	0	54	81	0	0	18	0.69
11987272--11987320	25	1.9	26	87	4	73	38	42	0	18	1.50
11987270--11987322	13	4.2	13	80	4	63	43	39	0	16	1.49
11987393--11987432	7	5.9	7	85	5	55	45	27	0	27	1.54
11987352--11987438	28	3.2	28	75	18	76	49	24	1	25	1.57
11997705--11997733	14	2.1	14	100	0	58	41	6	31	20	1.79
12000040--12000212	85	2.0	85	88	0	256	39	9	10	39	1.74
12003428--12003495	3	22.7	3	96	0	127	33	1	0	64	1.02
12005736--12005765	3	10.0	3	100	0	60	66	0	0	33	0.92
12006317--12006358	21	2.0	21	85	0	57	42	2	0	54	1.13
12006938--12006980	14	2.9	15	82	3	52	46	0	0	53	1.00
12006956--12007002	24	1.9	25	82	4	60	44	2	4	48	1.34
12012812--12012850	20	1.9	20	85	15	53	69	2	0	28	1.02
12013581--12013633	26	2.0	26	85	7	70	54	5	0	39	1.24
12018191--12018241	21	2.4	23	71	18	56	50	9	21	17	1.74
12023997--12024036	20	2.0	21	85	5	55	40	2	2	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12024293--12024352	15	3.7	15	76	24	59	81	1	15	1	0.85
12024284--12024347	11	6.2	10	79	12	67	81	1	15	1	0.85
12024290--12024347	22	2.7	21	89	5	89	82	1	13	1	0.82
12024290--12024352	21	2.8	22	88	7	74	82	1	14	1	0.82
12024293--12024352	17	3.6	17	80	13	63	81	1	15	1	0.85
12033433--12033496	29	2.2	28	78	13	67	62	6	0	31	1.20
12034028--12034076	22	2.2	21	82	10	62	65	0	0	34	0.93
12034745--12034780	18	2.0	18	89	10	56	2	11	13	72	1.23
12036812--12036843	15	2.1	15	100	0	64	25	6	15	53	1.65
12038217--12038258	7	6.1	7	86	5	59	66	2	14	16	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133