genome.fa.s645.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  49  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10433958--10433999	22	1.9	22	85	9	59	80	0	4	14	0.86
10433939--10434001	18	3.6	18	75	16	60	77	3	4	14	1.05
10433958--10434000	16	2.6	17	78	14	54	81	0	4	13	0.84
10435306--10435354	12	4.2	12	84	5	57	67	6	2	24	1.24
10435307--10435351	18	2.6	17	89	6	65	68	6	2	22	1.24
10435622--10435866	38	6.6	37	69	12	135	43	19	7	29	1.78
10436322--10436413	48	1.9	48	90	0	148	40	9	21	28	1.85
10437417--10437447	15	2.1	15	93	0	53	48	9	6	35	1.62
10437503--10437573	24	3.0	24	83	4	90	54	16	2	25	1.56
10437551--10437581	16	1.9	16	100	0	62	45	22	6	25	1.76
10437612--10437699	24	3.7	24	81	4	115	54	7	4	32	1.50
10437612--10437760	24	6.7	23	71	18	82	54	8	4	32	1.52
10437631--10437724	20	4.4	21	73	18	61	54	8	4	32	1.50
10445661--10445697	17	2.2	17	90	0	56	16	0	35	48	1.46
10447605--10447663	29	2.0	29	83	6	75	28	3	11	55	1.52
10448564--10448614	26	2.0	26	88	7	77	27	13	17	41	1.87
10449275--10449350	19	4.1	18	73	11	64	63	3	3	28	1.30
10449673--10449726	19	2.8	19	80	2	63	66	1	1	29	1.12
10450005--10450047	21	2.1	21	86	4	61	37	2	6	53	1.41
10464039--10464090	21	2.5	21	84	3	61	55	1	1	40	1.22
10464212--10464256	22	2.0	24	82	8	58	2	15	2	80	0.92
10464218--10464257	19	2.1	19	95	0	71	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10464855--10464955	18	5.5	17	69	22	53	22	3	4	68	1.26
10465435--10465471	19	1.9	19	89	10	58	35	5	10	48	1.61
10466235--10466436	102	2.0	103	82	4	248	38	8	9	43	1.68
10466605--10466662	20	3.0	19	87	9	82	56	6	1	34	1.36
10466606--10466688	21	4.2	20	85	11	91	51	9	3	34	1.52
10466616--10466697	21	4.0	21	83	10	89	52	9	2	35	1.48
10467265--10467310	11	4.0	11	83	16	58	54	21	6	17	1.65
10467429--10467467	20	2.0	20	85	10	53	53	20	10	15	1.70
10474355--10474396	22	1.9	22	85	0	57	47	0	0	52	1.00
10475998--10476033	3	12.0	3	100	0	72	33	0	0	66	0.92
10477579--10477611	17	1.9	17	88	11	50	54	0	0	45	0.99
10478264--10478288	2	12.5	2	100	0	50	48	0	0	52	1.00
10479863--10479895	3	11.0	3	100	0	66	66	0	0	33	0.92
10479965--10479991	14	1.9	14	100	0	54	55	0	0	44	0.99
10482701--10482735	13	2.8	13	91	4	54	48	0	0	51	1.00
10483823--10483894	33	2.2	33	85	7	101	48	4	5	41	1.45
10487842--10487936	5	18.8	5	73	17	56	15	4	3	76	1.06
10488330--10488384	21	2.9	18	72	15	56	40	5	0	54	1.23
10488550--10488601	21	2.4	21	81	15	61	46	3	0	50	1.20
10490277--10490305	10	2.7	11	94	5	51	20	0	17	62	1.33
10494381--10494418	20	1.9	20	94	0	67	21	18	2	57	1.52
10494555--10495435	437	2.0	437	98	0	1708	32	16	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10502304--10502448	22	6.5	22	74	6	96	34	26	16	22	1.95
10502490--10502559	23	3.0	22	78	12	61	30	24	14	31	1.94
10502547--10502617	32	2.2	32	82	0	79	38	23	14	23	1.92
10502628--10502813	97	1.9	97	86	0	264	34	13	13	37	1.85
10502628--10502834	97	2.1	97	82	0	243	35	14	13	36	1.85
10503555--10503601	23	2.0	23	87	8	67	68	0	2	29	1.02
10508354--10508383	11	2.7	11	94	0	51	33	16	16	33	1.92
10508625--10508670	21	2.2	21	84	0	56	54	19	0	26	1.44
10509380--10509705	160	2.0	159	79	6	347	42	19	4	33	1.73
10514611--10514643	3	11.3	3	93	6	59	69	0	0	30	0.88
10529899--10529943	5	8.6	5	80	9	54	17	2	2	77	0.97
10529900--10529960	27	2.2	27	82	2	68	18	4	4	72	1.21
10529980--10530032	11	4.8	11	80	17	65	81	1	11	5	0.94
10529980--10530032	22	2.4	22	90	6	81	81	1	11	5	0.94
10531025--10531079	28	2.0	28	85	7	76	9	9	1	80	0.99
10532333--10532382	24	2.1	24	85	3	66	30	4	8	58	1.45
10534587--10534733	65	2.3	65	87	0	213	36	12	8	42	1.72
10535128--10535182	28	1.9	29	88	3	85	32	3	14	49	1.61
10536029--10536077	23	2.0	25	88	7	75	67	14	2	16	1.33
10536119--10536150	16	2.1	15	94	5	55	53	0	3	43	1.16
10536121--10536165	21	2.1	21	91	0	72	53	0	2	44	1.13
10536681--10536727	3	15.7	3	95	0	85	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10542451--10542475	10	2.5	10	100	0	50	20	0	44	36	1.52
10544464--10544536	12	6.1	12	71	15	53	49	8	42	0	1.32
10544446--10544536	24	3.8	24	76	16	82	50	7	41	0	1.31
10544496--10544540	18	2.5	18	85	0	63	53	2	44	0	1.13
10544496--10544540	12	3.8	12	82	11	65	53	2	44	0	1.13
10544928--10545027	51	2.0	51	93	0	173	29	17	17	37	1.92
10545723--10546248	126	4.1	130	78	11	385	39	10	4	44	1.60
10546739--10546804	27	2.6	24	75	15	62	42	10	3	43	1.54
10546756--10546957	61	3.3	64	79	13	180	44	16	1	36	1.60
10547035--10547089	16	3.2	18	73	21	64	49	1	1	47	1.23
10547035--10547090	15	3.4	16	75	20	62	48	1	1	48	1.22
10547462--10547576	61	1.9	61	90	0	176	39	19	5	36	1.74
10548992--10549029	3	12.7	3	88	0	58	34	60	0	5	1.19
10550452--10550485	15	2.2	16	89	5	52	47	0	5	47	1.26
10550584--10550633	22	2.3	22	85	0	64	38	0	2	60	1.09
10550523--10550707	91	2.1	91	85	6	252	40	5	7	47	1.55
10550598--10550641	19	2.3	19	84	7	54	45	2	0	52	1.13
10550591--10550634	22	2.0	22	90	0	70	40	0	0	59	0.98
10551224--10551280	28	2.0	30	82	6	73	45	1	7	45	1.40
10551651--10551680	5	5.8	5	96	4	51	20	0	3	76	0.92
10551641--10551688	15	3.1	15	82	8	53	16	2	6	75	1.11
10553472--10553507	12	2.9	12	87	4	54	72	2	16	8	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10558140--10558183	20	2.2	20	84	12	54	61	0	9	29	1.27
10562276--10562580	55	5.4	56	79	11	318	35	9	8	46	1.68
10562308--10562525	119	1.8	119	90	2	348	33	9	11	46	1.72
10562652--10562735	5	15.4	5	72	20	62	72	4	3	19	1.17
10562723--10562748	8	3.2	8	100	0	52	65	0	0	34	0.93
10562766--10562821	22	2.5	22	85	0	76	21	25	35	17	1.95
10563506--10563561	11	5.3	11	78	8	62	64	1	5	28	1.26
10563519--10563632	23	4.9	24	69	22	82	58	2	4	34	1.32
10563519--10563668	48	3.3	46	73	17	145	60	2	4	32	1.29
10563595--10563662	20	3.5	20	79	2	75	63	2	2	30	1.24
10563888--10564215	43	7.7	42	76	13	246	42	18	15	24	1.89
10563888--10564252	87	4.3	82	79	9	306	41	19	15	23	1.89
10563888--10564229	44	8.0	43	79	8	322	41	19	15	23	1.89
10565267--10565308	6	6.7	6	87	12	50	14	11	0	73	1.09
10565273--10565312	21	1.9	21	90	10	64	12	15	0	72	1.12
10565273--10565303	15	2.1	15	94	5	55	12	12	0	74	1.08
10565258--10565308	27	1.9	27	88	11	79	11	13	0	74	1.07
10565267--10565303	6	5.4	7	90	9	51	13	13	0	72	1.11
10565267--10565311	20	2.2	21	92	7	76	13	13	0	73	1.10
10575627--10575658	12	2.7	12	90	0	55	90	3	6	0	0.53
10575729--10575976	55	4.6	53	80	6	273	33	11	10	43	1.75
10575729--10575965	54	4.4	53	80	6	269	34	11	10	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10575729--10575976	109	2.3	109	91	1	390	33	11	10	43	1.75
10576103--10576142	8	4.2	10	82	17	50	65	0	0	35	0.93
10576103--10576154	16	3.5	15	80	17	56	63	0	0	36	0.95
10576090--10576154	22	2.8	23	73	20	64	61	1	0	36	1.05
10576896--10577027	48	2.9	44	80	11	140	59	2	3	35	1.26
10576896--10577027	46	2.9	46	81	11	130	59	2	3	35	1.26
10576896--10577027	24	5.8	24	76	16	120	59	2	3	35	1.26
10576896--10577046	32	4.6	33	67	17	84	60	2	3	33	1.27
10581965--10582027	31	2.0	31	84	6	83	31	6	3	58	1.39
10585430--10585457	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133