genome.fa.s645.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  86  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17111197--17111258	32	1.9	33	90	3	99	32	6	8	53	1.56
17111287--17111329	21	2.1	20	91	4	68	37	4	6	51	1.50
17111188--17111324	17	7.6	17	69	14	62	32	6	10	51	1.62
17111286--17111380	45	2.1	45	88	0	136	33	3	8	54	1.46
17111308--17111409	45	2.5	38	76	17	98	30	1	12	54	1.49
17111322--17111396	21	3.2	25	72	18	88	28	1	12	58	1.42
17111276--17111381	20	5.1	21	74	15	89	32	3	10	53	1.53
17111298--17111396	45	2.2	45	94	0	171	29	2	12	56	1.47
17112896--17112930	19	1.9	18	88	11	54	31	11	5	51	1.61
17112630--17113028	130	3.0	132	75	6	405	26	11	13	49	1.75
17114239--17114295	10	6.1	9	82	12	62	75	0	15	8	1.04
17114239--17114295	18	3.1	18	82	14	71	75	0	15	8	1.04
17114227--17114301	10	7.6	10	73	23	52	72	0	18	9	1.11
17114239--17114301	19	3.2	20	78	10	60	74	0	15	9	1.06
17114245--17114307	27	2.3	27	83	0	81	74	0	15	9	1.06
17116014--17116129	36	3.2	34	77	13	117	32	10	17	39	1.83
17116036--17116188	37	4.2	36	80	5	164	33	7	16	41	1.78
17116002--17116188	73	2.6	73	78	10	190	34	9	15	40	1.80
17116043--17116186	36	3.9	36	79	7	130	35	8	16	39	1.79
17116255--17116298	18	2.4	18	80	0	52	25	15	22	36	1.94
17116359--17116403	22	2.0	22	86	0	63	33	22	6	37	1.80
17116743--17116961	22	10.0	22	68	9	52	33	18	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17116993--17117213	43	5.2	42	78	9	200	28	11	16	42	1.83
17118183--17118228	16	2.5	20	86	13	64	32	6	13	47	1.68
17118268--17118362	24	4.1	24	69	17	67	30	3	10	55	1.49
17118363--17118414	20	2.7	20	82	14	72	36	3	11	48	1.58
17118401--17118465	27	2.6	25	76	16	71	21	6	20	52	1.68
17121905--17122015	52	2.1	53	85	8	147	61	5	5	27	1.40
17122558--17122610	21	2.5	22	84	12	74	66	0	0	33	0.92
17122569--17122609	15	2.7	15	88	7	57	65	0	0	34	0.93
17123305--17123343	20	1.9	21	94	5	71	43	5	0	51	1.24
17124068--17124099	2	16.0	2	93	0	55	50	3	0	46	1.17
17126550--17126576	2	13.5	2	100	0	54	51	0	0	48	1.00
17127172--17127213	19	2.3	18	88	12	59	26	0	2	71	0.98
17128041--17128065	9	2.8	9	100	0	50	56	0	0	44	0.99
17129948--17130012	27	2.4	28	84	5	80	35	7	4	52	1.51
17130448--17130510	20	3.1	20	73	8	56	20	0	33	46	1.51
17130451--17130524	14	5.5	13	69	15	53	20	0	32	47	1.50
17130553--17130604	19	2.8	18	80	8	68	15	1	40	42	1.58
17133214--17133247	14	2.4	14	90	0	50	20	5	23	50	1.70
17133928--17133991	18	3.7	18	72	15	55	42	12	6	39	1.68
17134206--17134309	42	2.5	42	81	9	122	34	21	9	34	1.86
17134241--17134320	42	1.9	42	92	0	133	36	17	7	38	1.78
17134304--17134403	42	2.4	42	79	0	110	33	19	10	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17134165--17134403	126	1.9	125	80	2	282	31	19	10	38	1.86
17134571--17134759	13	14.2	13	72	17	115	44	35	1	18	1.60
17134569--17134759	20	9.9	20	70	15	91	43	35	1	18	1.60
17134571--17134744	7	26.7	7	71	14	106	43	35	1	18	1.61
17134661--17134721	24	2.5	24	91	2	104	49	32	3	14	1.60
17137188--17137326	19	7.5	19	72	12	101	17	3	34	43	1.67
17137188--17137290	38	2.7	38	81	11	122	19	3	31	45	1.68
17137163--17137273	57	1.9	57	80	7	127	18	2	33	45	1.63
17138307--17138331	13	1.9	13	100	0	50	0	20	0	80	0.72
17146434--17146487	26	2.1	26	85	0	72	38	7	9	44	1.65
17155101--17155127	14	1.9	14	100	0	54	37	14	22	25	1.93
17157965--17158336	62	6.0	62	74	10	179	34	10	11	42	1.76
17158126--17158402	63	4.5	62	73	13	219	33	9	12	44	1.73
17158126--17158802	63	10.6	63	73	12	166	33	10	10	45	1.72
17158464--17158837	66	5.8	66	78	7	286	33	10	9	45	1.71
17158452--17158838	129	3.0	128	76	8	369	33	10	9	45	1.72
17158653--17158755	32	3.2	32	70	19	90	35	12	4	46	1.63
17159585--17159618	15	2.2	16	89	5	52	8	11	2	76	1.12
17161848--17161872	12	2.1	12	100	0	50	36	0	0	64	0.94
17169241--17169286	20	2.3	20	84	0	56	54	10	13	21	1.69
17170388--17170446	31	1.9	31	86	6	84	44	18	3	33	1.67
17171948--17172018	27	2.6	27	82	6	90	69	2	4	23	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17172003--17172051	21	2.3	21	75	0	53	69	8	0	22	1.14
17172157--17172207	20	2.5	21	83	3	59	47	5	5	41	1.52
17172171--17172221	20	2.5	20	84	12	68	47	1	3	47	1.32
17172244--17172622	9	41.0	9	64	15	68	32	1	5	61	1.25
17172427--17172561	17	7.7	16	75	16	90	34	0	6	58	1.24
17172491--17172576	18	4.7	18	81	5	93	38	0	3	58	1.15
17172484--17172585	54	1.9	52	84	7	134	36	0	3	59	1.16
17172553--17172621	11	6.4	11	77	9	61	31	0	4	63	1.14
17172535--17172597	29	2.2	27	81	10	72	34	0	4	60	1.18
17173219--17173276	26	2.2	26	87	6	82	36	8	13	41	1.76
17173810--17173868	25	2.4	25	80	5	66	30	1	3	64	1.20
17175700--17175727	14	2.0	14	100	0	56	28	7	0	64	1.20
17180201--17180275	35	2.1	35	87	0	105	18	24	22	34	1.96
17182453--17182505	25	2.1	26	92	3	90	56	3	13	26	1.54
17185050--17185112	33	1.9	32	90	3	99	63	11	1	23	1.36
17185054--17185114	19	3.5	19	72	21	60	60	11	3	24	1.46
17186928--17186962	18	1.9	18	88	0	52	51	8	8	31	1.63
17189967--17190058	32	2.9	31	76	9	80	44	18	6	30	1.75
17194060--17194091	6	5.7	6	89	10	50	0	12	0	87	0.54
17194060--17194091	17	1.9	16	93	6	55	0	12	0	87	0.54
17194569--17194620	26	2.0	26	88	0	77	11	1	36	50	1.50
17194584--17194657	19	4.2	19	69	22	61	16	0	33	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17194569--17194632	33	1.9	33	93	6	112	12	1	35	50	1.50
17194569--17194627	7	8.7	7	76	14	52	13	1	35	49	1.52
17196491--17196521	3	10.3	3	100	0	62	67	0	0	32	0.91
17197015--17197048	17	2.0	17	88	0	50	73	0	2	23	0.97
17199775--17199816	12	3.4	12	78	15	50	71	0	26	2	0.98
17201046--17201104	17	3.4	16	86	11	73	74	1	13	10	1.14
17202205--17202285	41	2.0	40	85	2	108	33	8	19	38	1.83
17202639--17202676	18	2.1	18	100	0	76	34	10	5	50	1.59
17203169--17203345	41	4.3	40	74	9	117	40	15	10	34	1.81
17203631--17203667	19	2.0	18	94	5	65	81	13	0	5	0.86
17204010--17204041	16	2.0	16	93	0	55	71	6	0	21	1.07
17205869--17205921	3	17.7	3	100	0	106	66	0	0	33	0.92
17206050--17206082	11	2.8	12	86	9	50	66	0	0	33	0.92
17206176--17206244	19	3.6	19	78	0	57	46	21	8	23	1.79
17207247--17207295	20	2.4	21	80	10	57	67	4	2	26	1.19
17207581--17207848	49	5.6	49	79	8	273	28	17	5	49	1.68
17207581--17207848	97	2.8	95	76	10	276	28	17	5	49	1.68
17207832--17207926	36	2.6	36	80	3	102	29	18	6	45	1.74
17208210--17208289	39	2.0	40	95	2	144	41	12	2	43	1.56
17217812--17217852	19	2.1	20	86	4	57	24	0	7	68	1.15
17221586--17221624	11	3.5	11	85	0	60	20	0	28	51	1.48
17221651--17221807	52	3.0	52	86	1	217	40	8	24	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17236518--17237416	220	4.1	220	82	4	972	49	8	12	30	1.70
17236521--17237416	441	2.0	435	82	5	1061	48	8	12	30	1.70
17237362--17237430	21	3.3	21	70	9	52	59	2	5	31	1.36
17238265--17238333	21	3.3	21	72	9	61	59	2	5	31	1.36
17238806--17238975	67	2.5	67	82	5	209	50	5	10	34	1.60
17239111--17239183	19	3.3	23	75	23	68	67	1	0	31	1.00
17239135--17239182	19	2.5	19	90	10	71	66	2	0	31	1.03
17239448--17239492	10	4.5	10	85	0	54	48	6	0	44	1.29
17240250--17240300	19	2.7	19	78	6	59	58	13	1	25	1.46
17240548--17240576	12	2.3	13	94	5	51	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133