genome.fa.s645.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  65  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13188920--13194745	361	16.2	357	71	11	2539	40	8	10	41	1.68
13188932--13194745	716	8.1	711	70	12	2687	40	8	10	41	1.68
13190897--13191070	87	2.0	87	90	2	278	38	6	6	47	1.57
13191017--13194746	181	20.9	179	75	8	2539	40	8	9	41	1.68
13191316--13194738	180	19.2	179	73	9	999	39	8	10	41	1.68
13190984--13194745	539	7.0	540	75	8	2508	40	8	9	41	1.68
13195456--13197473	181	11.2	180	76	7	1482	39	8	9	41	1.69
13195456--13197473	361	5.6	358	76	7	1611	39	8	9	41	1.69
13196667--13196699	18	1.9	17	88	11	50	48	6	6	39	1.53
13195480--13197473	898	2.2	895	78	6	2033	39	8	9	41	1.69
13197318--13197632	158	2.0	160	85	3	431	35	9	10	44	1.70
13200046--13200093	20	2.3	20	82	7	60	41	0	16	41	1.48
13203817--13203868	27	1.9	27	88	0	77	26	7	30	34	1.85
13205621--13207767	181	12.0	178	75	6	1403	39	7	10	42	1.68
13205877--13207767	356	5.3	349	74	9	1011	40	7	10	42	1.67
13205877--13211372	538	10.1	536	70	12	2063	39	7	9	42	1.68
13208030--13211439	181	19.0	181	75	6	2256	40	8	9	42	1.67
13208154--13211439	364	9.1	361	75	7	2084	40	8	9	41	1.68
13209797--13210130	183	1.8	183	80	3	404	39	8	8	43	1.67
13208166--13214301	721	8.6	705	72	11	2838	40	8	9	41	1.68
13211427--13214301	181	16.1	181	75	7	1971	40	8	9	41	1.68
13213961--13214269	169	1.8	169	82	2	397	40	6	10	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13215022--13215135	10	11.2	10	73	21	78	6	16	0	77	0.97
13215018--13215093	26	3.1	26	76	17	74	7	18	0	73	1.06
13217069--13217397	182	1.8	179	83	5	423	42	8	8	40	1.66
13217069--13217436	182	2.1	179	80	5	404	42	8	8	40	1.67
13217090--13217747	327	2.0	325	79	7	692	42	10	8	38	1.70
13217420--13221319	181	21.6	180	74	7	2451	42	10	7	38	1.68
13217420--13221310	358	10.8	358	74	8	2443	42	10	7	38	1.68
13219239--13219299	25	2.4	25	91	0	104	45	8	3	42	1.50
13219451--13221319	361	5.2	358	76	7	1379	43	9	7	39	1.66
13217461--13221310	901	4.3	890	74	9	2823	42	10	7	38	1.68
13219451--13221306	540	3.4	541	76	8	1217	43	9	7	39	1.67
13221547--13222161	180	3.4	177	78	8	534	41	9	7	40	1.67
13221390--13222282	181	5.0	180	76	9	763	40	9	8	41	1.68
13222317--13224139	181	10.1	178	74	9	1085	39	9	10	41	1.71
13222656--13224504	540	3.5	534	79	6	1627	39	8	10	41	1.70
13222382--13224139	717	2.4	712	77	6	1756	39	9	10	40	1.71
13223986--13224294	156	2.0	155	85	0	420	41	9	10	39	1.71
13223810--13224475	336	2.0	337	84	5	891	40	8	9	40	1.69
13224506--13225729	181	6.8	180	76	7	822	41	9	8	40	1.70
13224604--13225445	357	2.3	357	79	5	833	41	9	9	40	1.70
13225727--13229223	181	19.4	181	76	6	2547	40	8	10	41	1.69
13229723--13231889	181	12.1	181	75	8	1436	42	9	7	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13229723--13231858	358	6.0	360	75	9	1569	42	9	7	39	1.67
13229821--13231832	539	3.7	536	77	8	1721	42	9	7	40	1.67
13231383--13231858	182	2.6	181	82	4	505	42	11	7	38	1.69
13232119--13242636	181	57.7	180	69	12	2875	39	8	9	41	1.69
13234658--13235168	178	2.9	178	77	5	437	42	7	9	39	1.66
13234984--13235019	16	2.2	18	85	14	51	41	2	0	55	1.14
13232348--13235166	357	7.9	354	72	10	1366	40	8	10	41	1.69
13235124--13235327	106	1.9	106	83	7	261	35	8	6	49	1.58
13235502--13236082	179	3.2	177	76	7	512	41	7	10	40	1.67
13236065--13236101	19	1.9	19	94	0	65	35	8	13	43	1.74
13236299--13238149	180	10.3	178	75	8	1198	40	8	8	42	1.68
13236293--13242636	361	17.5	358	72	9	2919	39	8	9	42	1.69
13236345--13238142	541	3.3	539	76	6	1203	40	8	8	42	1.67
13237343--13237694	179	2.0	180	80	3	406	41	11	7	39	1.68
13236357--13238146	900	2.0	900	80	5	2030	40	8	8	42	1.67
13239779--13242613	539	5.2	538	77	7	1416	39	8	10	42	1.69
13238469--13242594	720	5.7	704	74	9	2355	39	8	9	42	1.69
13242102--13242146	18	2.6	17	79	13	56	44	6	8	40	1.62
13242630--13242829	106	1.9	107	85	3	278	32	7	9	52	1.60
13242721--13243473	181	4.2	180	78	7	654	41	7	9	41	1.65
13242959--13243480	180	2.9	179	80	5	507	42	8	8	40	1.65
13243560--13243695	65	2.1	66	87	2	193	42	7	11	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13243655--13244401	180	4.2	178	76	7	611	40	8	10	41	1.69
13243686--13244398	361	2.0	355	79	6	751	40	8	10	41	1.69
13244535--13245481	176	5.3	179	74	8	462	40	8	9	41	1.67
13245514--13245557	17	2.5	17	85	10	54	40	6	4	47	1.50
13245689--13245738	17	2.8	18	77	17	52	36	8	6	50	1.57
13246810--13246842	18	1.9	17	88	11	50	39	6	6	48	1.53
13246552--13247197	337	1.9	341	80	8	767	42	8	7	41	1.64
13246893--13250585	181	20.6	180	76	8	2660	40	8	8	41	1.67
13246303--13250676	362	12.3	360	76	8	3109	40	8	8	41	1.67
13248771--13248803	18	1.9	17	88	11	50	42	6	3	48	1.43
13250942--13256547	180	31.5	176	72	11	2353	41	9	8	39	1.68
13251062--13256535	541	10.3	530	74	10	2149	41	9	8	40	1.68
13253662--13256522	181	16.0	180	76	8	2226	41	9	8	40	1.67
13253700--13259023	713	7.6	708	73	12	3217	41	9	8	40	1.67
13255195--13255223	14	2.0	15	93	6	51	51	6	0	41	1.28
13256868--13256900	18	1.9	17	88	11	50	39	6	6	48	1.53
13256541--13257101	177	3.1	175	81	5	595	40	11	6	41	1.68
13257211--13259023	181	10.1	179	76	7	1394	41	9	8	40	1.68
13257211--13259023	531	3.4	538	77	7	1344	41	9	8	40	1.68
13257210--13259023	894	2.0	889	80	4	1988	41	9	8	40	1.68
13261061--13261096	18	2.0	18	94	0	63	38	8	11	41	1.71
13261079--13262455	181	7.7	180	77	7	1079	40	9	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13261079--13262398	180	7.3	182	77	7	909	40	9	8	41	1.68
13261087--13262361	545	2.4	540	78	6	1222	41	9	8	40	1.68
13262457--13265906	181	19.4	173	70	12	1137	40	7	10	41	1.67
13263801--13265905	181	11.7	181	75	8	1574	40	7	10	41	1.67
13263801--13265905	355	5.8	362	76	8	1591	40	7	10	41	1.67
13263801--13265743	540	3.6	534	76	8	1366	40	7	10	41	1.67
13266211--13266352	71	2.0	71	97	0	266	44	13	7	34	1.72
13266682--13266736	21	2.6	22	77	8	62	29	23	23	23	1.99
13275401--13278028	181	14.6	180	75	4	1816	39	8	9	42	1.68
13275401--13278030	539	4.9	532	75	7	1526	39	8	9	42	1.68
13275984--13277986	720	2.8	714	78	7	1786	40	8	9	42	1.67
13278399--13281626	181	17.9	180	76	6	2264	42	9	8	40	1.68
13281714--13282668	181	5.3	179	74	9	729	41	9	7	41	1.66
13282705--13283553	180	4.7	181	78	5	772	41	8	8	40	1.67
13282719--13283553	360	2.3	359	81	5	905	41	8	8	40	1.66
13283520--13283577	25	2.3	25	96	0	107	53	6	15	24	1.66
13283871--13283938	29	2.4	29	85	2	93	39	2	5	51	1.41
13283900--13284585	177	3.8	179	77	8	569	39	8	10	41	1.70
13284446--13284729	147	1.9	146	84	4	374	45	8	9	36	1.66
13284593--13287612	181	16.8	180	75	7	2148	40	8	9	41	1.68
13287376--13287425	17	2.8	18	82	11	59	46	4	10	40	1.56
13287790--13291178	181	19.0	180	75	8	2438	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13287790--13291178	358	9.5	354	75	9	2309	41	9	8	40	1.68
13287783--13291178	539	6.4	533	74	9	2310	41	9	8	40	1.68
13290841--13290879	19	1.9	20	85	15	53	33	15	5	46	1.68
13291170--13291771	164	3.6	163	77	9	520	43	8	6	40	1.63
13291170--13291651	163	3.0	161	81	8	421	43	9	6	40	1.63
13291488--13292082	180	3.3	178	79	7	609	41	9	8	40	1.68
13291527--13291955	181	2.4	178	84	5	535	43	9	7	39	1.64
13292088--13293124	182	5.7	180	75	7	791	41	10	8	39	1.69
13292111--13295939	181	21.0	178	69	12	1106	41	10	8	39	1.69
13292265--13293124	363	2.4	360	79	6	841	41	10	8	39	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133