genome.fa.s645.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  31  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7132781--7133688	313	2.9	312	87	2	1309	40	15	10	33	1.81
7141348--7141400	24	2.2	24	79	0	61	50	5	1	41	1.36
7141278--7141637	64	5.8	64	73	12	297	46	10	6	36	1.65
7141423--7141665	125	2.0	119	84	6	310	45	11	9	34	1.71
7141531--7141583	24	2.2	24	83	6	63	54	5	3	35	1.42
7141279--7141637	183	2.0	183	89	0	547	46	10	6	36	1.65
7142099--7142440	144	2.4	144	86	2	456	34	13	10	41	1.78
7142891--7142917	11	2.5	11	100	0	54	92	0	7	0	0.38
7142954--7143011	20	2.8	21	84	12	75	67	3	15	13	1.36
7159530--7159573	21	2.1	21	100	0	88	18	13	13	54	1.71
7159680--7159725	21	2.2	21	84	0	56	43	17	17	21	1.88
7168817--7168853	12	3.2	12	92	3	58	27	5	40	27	1.78
7181146--7181187	18	2.3	19	87	4	59	69	0	0	30	0.89
7187632--7187709	39	2.0	39	92	5	131	34	10	16	38	1.83
7187772--7187879	54	2.0	54	88	0	162	26	14	18	39	1.90
7196933--7196960	2	14.0	2	100	0	56	50	0	50	0	1.00
7198747--7198777	2	15.5	2	100	0	62	0	51	0	48	1.00
7206894--7207146	137	1.8	137	87	0	371	28	15	27	28	1.96
7210971--7211175	23	9.5	22	68	20	107	57	2	0	39	1.18
7210958--7211175	40	5.6	41	76	13	192	56	2	0	39	1.20
7210993--7211104	22	5.9	18	75	23	106	55	2	0	41	1.14
7210971--7211089	63	1.9	63	84	6	161	55	3	0	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7211030--7211162	15	9.4	15	68	21	74	55	2	0	41	1.17
7210988--7211160	18	9.2	18	68	22	88	56	2	0	40	1.19
7211014--7211175	11	14.9	10	64	20	58	57	2	0	39	1.17
7211251--7211320	26	2.7	27	87	10	87	44	1	1	52	1.18
7211251--7211321	25	2.8	25	87	8	99	45	1	1	52	1.18
7211251--7211298	9	5.4	9	80	14	64	47	0	0	52	1.00
7218417--7218476	30	2.0	30	93	0	102	40	6	23	30	1.80
7220620--7220671	22	2.4	22	96	0	95	23	15	28	32	1.95
7232044--7232119	6	12.7	6	91	0	53	27	19	2	50	1.61
7235755--7235810	26	2.2	26	100	0	112	37	30	3	28	1.74
7243630--7243665	19	1.9	18	88	5	54	33	5	19	41	1.75
7248695--7248837	54	2.7	54	78	5	166	36	13	27	23	1.92
7249193--7249378	77	2.4	77	83	1	239	39	15	18	26	1.90
7249338--7249642	80	3.8	80	71	10	230	38	14	20	26	1.91
7253233--7253296	27	2.3	28	86	5	85	62	15	1	20	1.40
7255979--7256003	2	12.5	2	100	0	50	52	0	0	48	1.00
7266837--7266909	29	2.5	29	79	2	74	47	2	9	39	1.50
7266837--7266955	30	4.1	29	78	4	105	50	2	7	39	1.44
7273033--7273076	20	2.2	20	87	0	61	34	6	4	54	1.47
7273540--7273574	19	1.9	19	88	11	56	68	0	25	5	1.11
7274204--7274236	14	2.3	15	90	10	52	24	6	0	69	1.10
7274213--7274255	14	3.0	14	82	3	50	25	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7274465--7274669	61	3.4	62	73	14	185	39	4	18	38	1.70
7274615--7274750	61	2.2	62	76	12	138	38	5	13	42	1.68
7278249--7278273	2	12.5	2	100	0	50	48	0	0	52	1.00
7281282--7281333	18	2.9	18	91	0	77	59	9	7	23	1.54
7281342--7281404	16	3.8	17	83	8	67	74	0	9	15	1.06
7281342--7281415	34	2.3	31	81	11	87	74	0	9	16	1.07
7281370--7281433	27	2.4	26	80	10	67	70	1	10	17	1.24
7282755--7282817	33	1.9	33	90	6	101	47	1	3	47	1.27
7282871--7282907	18	2.1	18	90	10	58	21	2	0	75	0.92
7283926--7283966	13	3.2	13	85	0	55	39	0	0	60	0.96
7284074--7284100	14	1.9	14	100	0	54	59	7	3	29	1.42
7284226--7284261	18	2.0	18	88	0	54	77	0	2	19	0.88
7287935--7287998	32	2.0	32	84	6	85	29	9	20	40	1.84
7287938--7288008	33	2.2	32	79	2	79	28	9	23	38	1.87
7291119--7291187	12	5.7	11	73	18	57	62	1	0	36	1.04
7299973--7300003	15	2.0	16	93	6	55	25	12	9	51	1.70
7301165--7301190	2	13.0	2	100	0	52	50	0	0	50	1.00
7301254--7301432	21	8.6	21	71	4	85	35	6	7	50	1.58
7301279--7301357	41	1.9	42	84	7	108	32	8	8	49	1.65
7301359--7301468	42	2.6	42	79	0	121	35	5	5	53	1.47
7301362--7301448	21	4.2	21	74	1	77	33	4	5	56	1.44
7301721--7301787	22	3.0	21	74	8	62	37	8	4	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7301736--7301869	22	6.1	22	71	8	76	37	7	9	45	1.65
7301881--7301954	25	3.1	25	78	7	91	41	13	4	40	1.63
7301881--7301973	47	2.0	47	89	4	143	41	11	4	41	1.61
7301912--7301973	25	2.7	22	75	18	54	41	11	3	43	1.56
7301867--7301973	22	4.7	22	75	7	97	42	10	3	42	1.56
7302076--7302126	10	4.9	10	75	17	50	41	1	5	50	1.37
7302089--7302187	22	4.5	21	74	12	74	36	6	7	50	1.54
7302076--7302187	44	2.6	44	78	5	113	37	5	6	50	1.50
7302251--7302294	22	2.0	22	81	0	52	31	6	4	56	1.46
7302258--7302303	22	2.1	22	84	4	58	28	13	4	54	1.57
7302553--7302605	22	2.4	22	83	0	70	49	9	1	39	1.46
7302651--7302757	43	2.5	43	87	6	146	41	6	6	45	1.56
7302651--7302757	21	5.0	21	71	15	85	41	6	6	45	1.56
7302599--7302765	22	7.7	22	71	10	94	39	7	7	46	1.59
7302674--7302778	22	4.9	22	74	14	76	42	7	4	44	1.54
7302968--7303015	22	2.2	22	85	7	62	41	14	0	43	1.45
7303839--7303894	22	2.5	22	82	0	67	41	10	3	44	1.56
7303988--7304074	44	2.0	44	81	0	102	36	10	5	47	1.62
7304039--7304089	22	2.3	22	80	6	59	37	13	7	41	1.74
7306952--7307134	92	2.0	92	92	0	303	46	13	6	33	1.69
7307566--7307625	25	2.4	24	86	5	84	46	13	13	26	1.80
7308076--7308110	17	2.1	17	94	0	61	68	5	0	25	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7308772--7308812	12	3.7	11	81	18	50	70	0	2	26	0.99
7309166--7309196	16	1.9	16	93	0	53	64	0	3	32	1.09
7309221--7309269	14	3.4	14	80	2	53	69	2	4	24	1.17
7309505--7309535	2	15.5	2	100	0	62	51	0	0	48	1.00
7312576--7312614	15	2.6	15	88	8	53	33	5	0	61	1.18
7312607--7312657	21	2.5	19	80	20	59	47	5	0	47	1.26
7312704--7312733	2	15.0	2	92	0	51	46	0	3	50	1.18
7313259--7313345	41	2.1	41	83	6	106	47	2	0	50	1.13
7314560--7314594	17	2.0	18	88	5	54	60	0	0	40	0.97
7316031--7316149	16	7.6	16	71	7	77	47	26	0	25	1.57
7316031--7316093	15	4.1	15	83	4	72	49	26	1	22	1.59
7316034--7316146	47	2.4	48	80	4	133	50	23	0	24	1.55
7327602--7327647	19	2.3	20	88	7	67	69	6	13	10	1.35
7327603--7327646	10	4.5	10	81	16	56	68	6	13	11	1.39
7328744--7329214	35	13.0	36	67	13	209	19	20	13	46	1.83
7328744--7329134	38	10.8	36	68	9	168	18	21	13	46	1.84
7328685--7329102	35	11.5	36	68	12	162	19	21	13	45	1.85
7328675--7329214	109	5.0	109	88	2	723	19	20	13	46	1.83
7329255--7329393	65	2.1	68	84	6	178	25	16	13	43	1.85
7329260--7329558	135	2.2	135	79	5	320	24	17	13	45	1.84
7329316--7329586	135	2.0	134	85	5	368	23	15	14	47	1.81
7330992--7331042	18	2.8	19	77	19	63	25	0	3	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7331441--7331565	16	7.9	16	77	4	112	48	28	0	21	1.56
7331449--7331555	15	6.9	15	78	5	106	49	26	0	23	1.56
7331441--7331555	31	3.7	31	74	4	115	49	27	0	21	1.55
7333891--7333929	19	2.1	19	85	0	51	23	12	25	38	1.90
7333907--7334060	56	2.7	55	82	2	173	20	16	25	37	1.94
7334064--7334181	56	2.1	56	85	0	164	27	11	24	35	1.91
7334240--7334290	19	2.7	20	81	6	61	21	11	19	47	1.81
7334306--7334385	19	4.1	20	71	10	67	16	15	22	46	1.84
7334652--7334710	19	3.1	19	70	0	55	32	16	15	35	1.90
7334719--7334802	19	4.5	19	69	8	64	19	14	26	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133