genome.fa.s645.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  7  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626842--1626882	13	3.5	13	75	25	54	29	56	0	14	1.39
1626839--1626896	22	2.6	22	86	2	80	27	51	1	18	1.56
1627828--1627874	21	2.2	21	84	3	58	29	2	12	55	1.49
1628189--1628264	31	2.5	31	78	8	84	44	26	2	26	1.67
1629854--1629902	26	2.0	24	84	8	62	38	0	4	57	1.18
1637881--1637922	20	2.2	20	87	8	61	38	0	0	61	0.96
1637940--1637995	20	2.5	22	80	16	62	55	0	0	44	0.99
1650451--1650553	50	2.0	51	94	1	181	56	7	16	19	1.64
1655216--1655303	34	2.6	34	80	3	97	43	7	6	42	1.60
1658082--1658298	102	2.1	103	92	5	361	47	0	3	48	1.17
1666818--1666850	15	2.1	17	88	11	52	84	0	15	0	0.61
1668468--1668511	20	2.2	20	83	4	52	52	4	6	36	1.49
1673073--1673116	22	2.0	22	95	0	79	43	15	9	31	1.79
1673766--1673790	12	2.1	12	100	0	50	36	24	8	32	1.84
1683048--1683099	23	2.3	22	77	6	59	75	0	13	11	1.06
1683715--1683801	42	2.1	42	97	0	165	50	16	18	14	1.78
1686273--1686314	20	2.0	21	86	9	59	73	4	11	9	1.22
1687486--1687541	18	3.3	18	80	12	73	25	1	0	73	0.93
1687473--1687546	33	2.2	34	76	9	82	21	1	1	75	0.95
1688396--1688424	8	3.6	8	100	0	58	13	0	0	86	0.58
1689413--1689447	3	11.7	3	93	0	61	37	0	28	34	1.58
1689404--1689472	6	11.8	6	83	10	54	47	0	15	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689997--1690268	114	2.4	114	79	1	285	41	13	20	24	1.89
1690110--1690461	114	3.1	111	78	4	346	38	11	23	26	1.88
1690451--1690670	114	1.9	114	81	3	264	39	10	22	27	1.86
1690515--1690764	114	2.2	114	83	0	302	38	11	22	28	1.89
1690573--1690789	114	1.9	114	83	1	283	38	10	23	28	1.88
1701331--1701404	31	2.4	31	81	4	78	60	4	10	24	1.47
1702387--1702439	17	2.8	19	86	11	65	79	5	0	15	0.91
1702405--1702441	11	3.3	11	85	7	56	86	0	0	13	0.57
1702387--1702439	6	8.5	6	82	14	63	79	5	0	15	0.91
1702382--1702446	17	3.4	18	77	12	60	80	6	1	12	0.97
1703199--1703224	13	2.0	13	100	0	52	23	0	23	53	1.46
1705020--1705089	28	2.5	28	76	2	79	35	10	18	35	1.84
1705640--1705673	3	11.3	3	100	0	68	64	0	0	35	0.94
1705841--1705878	19	1.9	19	89	5	58	78	0	13	7	0.94
1705841--1705879	20	2.0	20	85	10	53	79	0	12	7	0.93
1712603--1712641	17	2.3	17	90	0	60	10	5	0	84	0.76
1712870--1712921	20	2.6	21	84	6	63	13	7	0	78	0.94
1724474--1724525	22	2.5	22	78	6	63	38	3	0	57	1.17
1725525--1725573	24	2.0	25	84	11	66	34	0	2	63	1.06
1725530--1725635	29	3.7	28	77	13	99	39	2	3	53	1.33
1726981--1727024	3	14.7	3	90	0	70	63	0	34	2	1.07
1730184--1730227	10	4.5	10	81	16	56	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730184--1730227	20	2.2	20	88	4	63	31	0	2	65	1.05
1742761--1742790	14	2.1	15	93	6	53	63	0	0	36	0.95
1742759--1742792	14	2.5	13	86	13	50	61	0	0	38	0.96
1744395--1745324	335	2.8	335	90	1	1445	29	16	23	30	1.96
1746974--1747039	20	3.5	20	70	23	61	48	0	0	51	1.00
1747032--1747093	16	3.8	16	80	4	79	69	3	0	27	1.04
1747030--1747098	33	2.2	33	92	5	115	68	2	0	28	1.04
1750784--1753765	335	8.9	336	90	1	4615	29	15	24	30	1.96
1751748--1751799	27	1.9	27	85	14	72	38	9	21	30	1.85
1750784--1753783	670	4.5	670	95	0	5282	29	15	24	30	1.96
1752418--1752469	27	1.9	27	88	7	79	40	9	19	30	1.83
1755329--1755354	13	2.0	13	100	0	52	53	0	7	38	1.30
1756447--1756472	13	2.0	13	100	0	52	46	0	7	46	1.31
1757799--1757858	16	3.2	20	69	26	60	48	3	0	48	1.18
1757788--1757874	35	2.5	37	73	19	96	51	2	0	45	1.13
1758044--1758075	15	2.1	15	100	0	64	18	25	12	43	1.85
1766635--1766736	33	3.1	33	91	0	150	22	30	12	34	1.92
1788824--1788879	26	2.2	26	83	0	67	57	1	8	32	1.40
1788840--1789039	96	2.1	98	96	1	368	49	6	8	36	1.58
1800623--1800992	187	2.0	187	91	1	607	36	19	15	29	1.92
1801062--1801128	32	2.1	32	97	0	125	41	10	13	34	1.79
1810697--1810742	10	4.7	10	76	15	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810698--1810736	18	2.2	18	86	9	53	56	0	0	43	0.99
1811836--1811862	7	3.9	7	100	0	54	0	11	0	88	0.50
1813913--1813951	15	2.5	16	87	4	53	48	0	2	48	1.15
1814080--1814120	5	8.4	5	84	15	59	56	0	0	43	0.99
1814071--1814129	23	2.6	23	82	12	77	55	0	0	44	0.99
1814078--1814120	13	3.5	13	78	21	56	55	0	0	44	0.99
1814421--1814471	23	2.2	25	83	13	65	50	0	0	49	1.00
1814424--1814519	27	3.7	27	73	18	96	51	0	0	48	1.00
1818161--1818194	8	4.2	8	89	10	52	73	0	0	26	0.83
1826084--1826188	54	1.9	54	98	0	201	29	21	10	38	1.87
1827515--1827563	20	2.2	24	79	17	61	40	0	4	55	1.19
1827857--1827916	25	2.3	27	85	8	79	70	10	1	18	1.24
1827854--1827917	27	2.4	27	82	12	78	70	10	1	17	1.24
1827871--1827923	25	2.1	25	86	6	72	73	11	1	13	1.18
1829042--1829079	18	2.1	19	90	5	60	63	2	0	34	1.09
1829081--1829107	11	2.5	11	100	0	54	85	0	7	7	0.75
1833758--1834045	95	3.0	95	89	2	461	34	11	25	28	1.90
1846576--1846616	21	1.9	22	90	5	66	31	2	2	63	1.20
1848651--1848707	17	3.2	18	78	16	57	50	0	0	49	1.00
1850494--1850586	43	2.1	44	90	2	143	40	8	8	41	1.66
1851084--1851185	33	3.2	33	62	16	86	28	10	7	52	1.64
1851080--1851205	64	2.0	64	100	0	252	26	11	7	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855247--1855332	15	5.9	15	69	19	58	27	0	5	66	1.15
1855255--1855359	56	1.9	55	81	13	126	30	0	5	62	1.24
1856335--1856381	1	47.0	1	84	0	58	4	2	2	91	0.55
1856335--1856420	9	8.2	10	76	20	70	10	2	3	83	0.85
1856336--1856406	28	2.5	27	88	6	97	7	2	4	85	0.80
1856489--1856891	58	6.8	57	85	9	506	44	8	13	33	1.73
1856489--1856891	182	2.3	174	86	8	562	44	8	13	33	1.73
1869777--1869807	2	16.0	2	93	6	55	48	0	0	51	1.00
1869777--1869805	15	1.9	15	100	0	58	48	0	0	51	1.00
1871536--1871600	29	2.2	30	83	8	89	64	3	1	30	1.18
1872488--1872528	3	13.7	3	100	0	82	34	0	0	65	0.93
1879311--1879353	22	2.0	22	86	9	61	34	16	11	37	1.85
1880084--1880177	47	2.0	47	87	4	136	26	6	28	38	1.81
1886693--1886749	26	2.2	26	96	0	105	26	5	21	47	1.71
1903940--1903978	12	3.2	12	85	0	51	17	64	2	15	1.41
1903936--1903977	21	2.0	21	90	0	66	14	61	2	21	1.43
1904893--1905121	114	2.0	114	96	1	424	29	18	21	30	1.97
1908394--1908430	19	1.9	20	88	5	58	54	2	0	43	1.14
1908394--1908438	17	2.4	19	85	10	58	51	2	0	46	1.13
1913657--1913700	18	2.4	18	92	0	70	34	18	11	36	1.86
1914869--1914921	6	8.8	6	97	0	79	39	0	0	60	0.97
1921543--1921575	3	11.3	3	93	6	59	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1934064--1934103	13	2.9	14	85	7	64	22	0	5	72	1.04
1941536--1941586	19	2.7	18	78	6	57	41	0	0	58	0.98
1946092--1946322	117	2.0	117	96	0	426	42	8	12	36	1.73
1946515--1946553	2	19.5	2	100	0	78	48	0	0	51	1.00
1950552--1950617	34	1.9	34	87	6	98	39	18	6	36	1.75
1952649--1952677	13	2.1	14	93	6	51	24	0	0	75	0.80
1955313--1955369	24	2.4	23	80	11	71	43	5	1	49	1.35
1963426--1963470	6	7.5	6	82	0	54	4	4	62	28	1.34
1963424--1963475	12	4.3	12	80	0	59	7	3	59	28	1.43
1963424--1963502	24	3.3	24	76	0	68	8	7	55	27	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133