genome.fa.s645.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  81  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15983134--15983168	18	1.9	18	88	0	52	42	5	5	45	1.51
15984514--15984548	14	2.6	14	90	4	54	80	0	8	11	0.92
15987516--15987545	2	15.0	2	92	0	51	50	3	0	46	1.18
15990225--15990272	17	2.9	17	78	9	55	56	0	2	41	1.11
15990332--15990388	13	4.2	14	70	20	50	29	1	1	66	1.12
15999202--15999278	29	2.7	27	77	16	86	50	2	1	45	1.23
15999210--15999288	29	2.6	29	86	9	97	49	2	1	46	1.23
15999240--15999287	16	3.0	16	74	20	55	52	2	0	45	1.12
15999707--15999732	12	2.2	12	100	0	52	80	0	0	19	0.71
16001643--16001705	17	3.5	17	79	16	65	34	0	1	63	1.04
16001643--16001705	16	3.5	17	79	20	58	34	0	1	63	1.04
16001795--16001850	28	2.2	26	81	15	64	53	8	1	35	1.43
16002887--16002924	18	2.0	20	85	10	53	57	0	2	39	1.12
16003581--16003641	27	2.4	25	75	19	65	49	0	1	49	1.10
16003770--16003822	13	3.9	13	75	7	52	20	9	20	49	1.77
16004385--16004428	21	2.1	21	87	4	63	4	6	6	81	0.97
16006031--16006081	21	2.4	21	93	0	84	43	15	5	35	1.71
16007013--16007052	17	2.4	17	91	0	62	7	15	0	77	0.98
16007659--16007690	8	4.2	8	84	15	50	12	0	0	87	0.54
16007636--16007690	14	3.9	14	85	2	74	18	1	0	80	0.81
16007673--16007745	30	2.4	29	76	13	76	24	5	0	69	1.09
16008083--16008140	20	3.0	19	72	20	57	3	3	17	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16008264--16008702	70	6.3	70	72	8	261	49	9	20	20	1.77
16008239--16008435	104	1.9	105	82	1	252	49	9	19	20	1.76
16008343--16008860	35	14.9	34	69	9	163	49	9	20	20	1.77
16008258--16008528	139	2.0	138	82	5	332	50	9	19	19	1.75
16008585--16008810	105	2.2	105	79	4	251	50	9	20	20	1.75
16008611--16008808	70	2.8	69	80	6	184	51	10	19	19	1.75
16009001--16009096	35	2.7	35	72	3	86	54	9	13	22	1.68
16009207--16009273	34	1.9	35	84	3	91	52	11	20	14	1.74
16009202--16009364	34	4.7	34	73	8	87	52	10	18	19	1.73
16009263--16009424	35	4.7	35	79	5	150	53	8	19	19	1.70
16009255--16009480	35	6.5	34	75	10	111	53	9	19	17	1.70
16009158--16009459	70	4.3	70	73	9	172	51	10	20	17	1.74
16009535--16009632	34	2.9	34	77	10	110	50	11	19	19	1.77
16009574--16009674	35	2.9	34	80	4	103	49	10	20	18	1.78
16009698--16009773	35	2.2	35	86	9	102	53	9	15	21	1.69
16010039--16010200	35	4.6	35	73	11	143	53	6	16	22	1.66
16010006--16010200	70	2.8	70	80	1	212	54	7	15	22	1.67
16010521--16010602	35	2.3	35	78	0	92	40	4	29	25	1.76
16010743--16010823	35	2.3	36	82	6	103	54	4	17	23	1.62
16012217--16012273	26	2.2	26	78	9	64	80	7	0	12	0.89
16012241--16012271	16	1.9	16	100	0	62	77	9	0	12	0.99
16012216--16012280	27	2.5	26	82	9	71	78	7	0	13	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16012968--16013017	11	4.6	11	82	12	68	78	0	0	22	0.76
16012968--16013016	4	12.5	4	76	20	50	77	0	0	22	0.77
16012968--16013016	23	2.1	24	88	3	73	77	0	0	22	0.77
16013734--16013870	59	2.5	55	79	11	145	33	16	12	37	1.86
16013748--16013860	59	1.9	59	87	1	165	32	16	12	38	1.86
16014005--16014182	86	2.1	86	85	4	243	33	20	12	32	1.91
16014091--16014283	101	1.9	103	86	5	275	34	20	11	34	1.88
16014166--16014389	120	1.8	124	81	6	287	36	17	10	36	1.84
16014166--16014477	120	2.5	123	77	10	280	35	17	10	36	1.85
16014392--16014476	41	2.1	41	90	0	134	32	18	12	35	1.89
16015108--16015335	104	2.2	105	87	2	316	33	15	16	34	1.90
16016168--16016223	16	3.4	15	73	26	51	32	1	1	64	1.14
16016174--16016230	18	3.3	18	74	18	66	29	1	3	64	1.20
16016160--16016231	34	2.1	34	97	0	135	30	1	2	65	1.15
16017042--16017088	24	2.0	24	82	0	58	48	12	27	10	1.74
16020933--16021003	9	8.2	9	72	18	53	49	0	1	49	1.09
16020933--16021003	26	2.8	26	87	4	101	49	0	1	49	1.09
16020967--16021053	16	5.5	15	72	18	61	50	0	1	48	1.08
16021091--16021272	23	7.5	24	70	21	123	41	1	1	56	1.14
16021111--16021253	18	7.1	18	71	23	83	42	1	1	54	1.17
16021091--16021235	66	2.3	62	84	7	184	42	1	0	55	1.13
16021171--16021250	35	2.3	34	80	8	81	42	1	2	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16021124--16021272	80	1.9	75	86	9	210	42	1	1	55	1.17
16028897--16028929	14	2.2	16	89	10	52	66	6	0	27	1.15
16028959--16029015	24	2.2	25	84	12	80	66	3	3	26	1.24
16028960--16029010	24	2.1	25	92	3	86	64	3	3	27	1.28
16029530--16029563	18	1.9	18	88	5	52	61	14	0	23	1.33
16029748--16029778	8	3.9	8	100	0	62	38	12	9	38	1.77
16029767--16029872	43	2.5	43	84	4	135	37	17	14	30	1.90
16030471--16030616	49	3.0	49	82	7	127	42	15	9	32	1.79
16031604--16031655	13	4.3	12	80	20	56	7	17	1	73	1.16
16031606--16031655	25	2.0	25	85	14	68	8	18	2	72	1.19
16043108--16043141	17	2.1	17	89	10	54	70	5	17	5	1.28
16045443--16045539	46	2.1	46	80	0	104	40	13	11	35	1.80
16046637--16046671	16	2.3	15	90	5	52	42	0	0	57	0.99
16047567--16047680	49	2.3	49	96	0	210	29	4	13	52	1.59
16047608--16047650	19	2.3	19	83	0	50	30	2	13	53	1.53
16047488--16048012	241	2.1	248	85	7	694	34	6	12	46	1.67
16048566--16048607	3	13.7	3	95	5	75	30	0	2	66	1.04
16063682--16063766	31	2.9	29	69	25	72	56	12	7	23	1.61
16063686--16063793	54	1.9	58	88	9	170	55	12	6	25	1.61
16063750--16063874	25	5.1	23	71	21	85	58	12	5	24	1.55
16063755--16063810	24	2.4	23	82	11	69	58	12	5	23	1.54
16063746--16063843	13	7.9	13	69	22	61	55	13	7	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16064401--16064441	17	2.4	17	83	0	55	63	9	0	26	1.25
16064781--16064826	18	2.6	17	83	10	56	60	4	8	26	1.44
16068767--16068816	21	2.4	22	87	12	70	36	6	6	52	1.51
16067969--16070959	234	12.8	232	72	11	1522	32	10	5	51	1.60
16067959--16069946	465	4.2	463	75	10	1388	31	10	5	51	1.59
16069645--16069689	22	2.0	22	82	4	54	24	2	8	64	1.34
16072012--16072074	27	2.3	27	81	10	76	58	3	3	34	1.30
16072109--16072147	21	1.9	19	85	10	51	43	0	0	56	0.99
16072013--16072270	131	2.0	130	85	3	349	50	2	3	43	1.33
16072360--16072416	26	2.3	25	81	6	62	45	0	0	54	0.99
16073268--16073316	3	16.3	3	95	0	89	65	0	2	32	1.04
16073717--16073750	3	11.3	3	100	0	68	67	0	0	32	0.91
16080482--16080537	27	2.0	28	83	10	71	37	1	7	53	1.39
16080564--16080604	21	2.0	21	85	0	55	26	0	2	70	0.99
16081138--16081173	14	2.7	13	87	8	54	52	2	0	44	1.15
16084811--16084871	19	3.3	18	75	13	61	44	24	9	21	1.82
16087285--16087343	21	2.7	21	78	19	59	38	3	0	57	1.15
16089688--16089721	11	3.2	11	87	8	52	58	11	2	26	1.47
16108734--16108781	22	2.2	22	84	0	60	31	14	14	39	1.86
16113353--16113562	42	5.2	42	77	13	183	8	19	8	64	1.46
16113433--16113521	18	4.7	19	71	18	53	7	17	7	66	1.42
16113397--16113557	79	2.1	78	84	5	211	8	19	8	63	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16113699--16113809	56	2.0	56	85	7	154	8	25	10	55	1.61
16114770--16114868	37	2.7	37	77	3	101	36	19	13	31	1.90
16114848--16114889	22	1.9	22	85	9	59	38	26	14	21	1.91
16114877--16114983	36	2.9	37	77	5	101	41	21	13	24	1.88
16114969--16115194	105	2.2	105	86	1	310	37	15	15	31	1.89
16116020--16116081	32	2.0	32	90	3	99	30	8	17	43	1.78
16116096--16116194	47	2.2	44	83	7	119	33	9	20	37	1.84
16116046--16116243	102	2.0	100	89	2	306	32	10	21	36	1.87
16116125--16116217	47	2.0	47	83	8	118	35	8	20	35	1.83
16116146--16116760	86	7.0	86	76	9	506	33	11	19	34	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133