genome.fa.s645.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  91  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17935095--17935948	33	26.4	33	72	10	347	33	19	15	30	1.93
17935304--17935372	29	2.4	29	92	0	120	20	27	20	31	1.97
17935095--17935913	159	5.1	161	73	10	408	33	20	15	30	1.94
17935095--17935880	65	12.2	65	69	13	277	33	20	15	30	1.94
17935678--17935795	62	1.9	62	80	0	137	33	22	16	27	1.96
17936033--17936088	26	2.2	26	96	0	103	21	16	12	50	1.78
17936039--17936103	26	2.5	26	84	0	85	21	21	13	43	1.87
17936163--17936213	7	7.6	7	73	8	52	80	0	5	13	0.89
17936259--17936349	37	2.5	36	85	7	114	74	1	0	24	0.88
17936264--17936348	22	3.8	22	77	14	86	72	1	0	25	0.91
17936290--17936360	10	7.0	9	74	19	52	77	1	0	21	0.85
17936294--17936360	18	3.7	17	77	13	62	77	1	0	20	0.85
17936400--17936441	11	4.1	10	82	14	50	69	0	2	28	1.01
17938153--17938222	16	4.4	16	77	12	65	68	0	1	30	0.98
17938343--17938475	39	3.4	38	77	5	133	44	26	11	18	1.83
17940426--17940469	21	2.1	21	82	0	52	15	25	6	52	1.68
17942400--17942451	13	3.9	13	80	5	59	69	0	1	28	0.99
17942549--17942596	24	2.0	24	87	4	69	56	22	2	18	1.52
17942573--17942671	39	2.6	38	85	4	128	47	23	6	23	1.73
17942580--17942671	20	4.8	20	68	7	66	46	23	6	22	1.75
17942650--17942683	12	2.8	12	100	0	68	58	26	0	14	1.36
17942662--17942722	19	3.2	19	70	11	52	50	31	4	13	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17942713--17942747	18	1.9	18	88	0	52	45	25	0	28	1.54
17942883--17942926	22	2.0	22	82	8	54	68	2	4	25	1.20
17943398--17943443	23	2.0	23	100	0	92	47	0	4	47	1.21
17944363--17944410	9	5.1	9	77	7	51	54	4	0	41	1.20
17948112--17948140	14	2.1	14	93	6	51	31	6	0	62	1.22
17949658--17949691	16	2.2	15	89	5	50	8	23	0	67	1.18
17949664--17949716	19	2.7	20	75	16	56	7	16	0	75	1.02
17949682--17949727	12	3.8	12	85	0	56	4	13	0	82	0.81
17952883--17952926	12	3.6	12	81	6	61	9	6	2	81	0.94
17953008--17953083	24	3.2	24	79	15	70	72	3	1	22	1.09
17953054--17953105	7	7.4	7	77	16	54	84	0	5	9	0.77
17953061--17953104	13	3.3	13	90	3	61	84	0	6	9	0.79
17953532--17953575	23	1.9	23	81	9	54	50	31	0	18	1.47
17953889--17954078	3	68.0	3	69	22	112	59	2	2	35	1.25
17953889--17954080	5	37.6	5	72	18	105	59	2	2	35	1.25
17953938--17954078	8	16.7	9	73	17	99	58	2	2	35	1.27
17954315--17954436	55	2.2	55	83	1	156	41	17	20	20	1.90
17954965--17954998	16	2.1	16	88	0	50	2	0	8	88	0.62
17958073--17958219	72	2.0	72	93	0	249	45	14	15	23	1.84
17963178--17963206	14	2.1	14	93	6	51	31	6	0	62	1.22
17964740--17964778	18	2.2	18	86	4	53	2	12	0	84	0.72
17968003--17968120	10	11.2	10	67	25	57	71	1	2	24	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17968032--17968099	28	2.7	26	84	13	88	69	1	1	27	1.06
17968051--17968120	28	2.5	27	86	6	86	72	2	0	24	0.98
17968089--17968129	19	2.2	19	95	0	73	80	2	2	14	0.92
17968314--17968355	21	2.0	20	82	13	50	47	14	11	26	1.78
17968923--17969080	8	19.1	8	70	8	50	58	1	3	36	1.25
17968919--17969080	3	60.0	3	71	20	108	59	1	3	35	1.24
17968919--17969082	5	31.6	5	73	16	104	59	1	3	35	1.24
17969320--17969445	55	2.3	54	84	4	162	40	14	21	23	1.90
17969521--17969652	55	2.4	55	78	5	142	36	18	23	21	1.95
17973066--17973210	70	2.0	72	93	2	249	46	16	15	21	1.84
17975311--17975369	22	2.7	23	79	12	70	69	1	3	25	1.13
17975311--17975371	21	2.9	22	83	9	74	70	1	3	24	1.11
17976222--17976404	3	66.3	3	69	25	111	60	2	3	33	1.25
17976222--17976404	14	13.3	14	73	20	138	60	2	3	33	1.25
17976223--17976404	8	21.8	8	73	20	117	60	2	3	34	1.25
17976237--17976406	5	32.6	5	77	12	123	60	2	2	34	1.25
17976223--17976406	70	2.6	66	81	10	172	60	2	3	34	1.25
17978028--17978088	29	2.0	31	84	12	83	49	14	3	32	1.60
17980652--17980706	28	1.9	28	82	10	67	32	3	10	52	1.54
17981957--17982000	17	2.5	17	82	14	54	15	0	38	45	1.47
17982027--17982282	13	19.4	14	71	16	106	17	0	34	47	1.52
17982180--17982282	20	5.2	20	78	9	102	13	0	35	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17982180--17982282	40	2.6	40	84	9	138	13	0	35	49	1.49
17982028--17982282	7	37.7	7	67	16	112	17	0	34	47	1.51
17983909--17983975	30	2.2	32	81	13	86	31	1	0	67	1.00
17984102--17984141	18	2.2	19	82	13	57	22	0	0	77	0.77
17984193--17984244	21	2.5	21	81	6	61	61	3	0	34	1.14
17984982--17985092	44	2.5	44	88	0	168	39	19	11	28	1.87
17985056--17985126	34	2.1	34	83	0	88	36	23	12	26	1.91
17985176--17985573	49	7.9	49	73	13	283	40	18	10	30	1.83
17985203--17985314	59	1.9	58	85	5	154	36	18	10	33	1.86
17985306--17985573	97	2.7	97	81	4	270	42	17	9	30	1.81
17985261--17985572	147	2.1	148	85	3	407	41	17	9	30	1.82
17986392--17986426	18	2.0	18	88	5	54	0	14	2	82	0.77
17996008--17996274	146	1.8	144	84	4	358	33	12	10	43	1.76
17995999--17996347	145	2.4	143	80	5	362	33	14	12	40	1.83
17999734--17999758	12	2.1	12	100	0	50	52	8	0	40	1.31
17999814--17999848	17	2.1	17	100	0	70	28	0	11	60	1.32
18002049--18002095	21	2.2	20	79	17	51	78	2	14	4	0.99
18004820--18005173	143	2.5	143	78	5	354	44	13	11	30	1.79
18005494--18005540	20	2.3	20	85	0	67	38	8	14	38	1.77
18006337--18006376	21	2.0	21	90	5	64	30	2	2	65	1.19
18007332--18007379	22	2.1	22	92	3	78	22	6	6	64	1.39
18007734--18007790	20	2.9	19	72	15	53	28	7	0	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18008910--18008943	17	2.0	17	94	0	59	14	5	0	79	0.91
18011379--18011406	10	2.8	10	100	0	56	42	0	0	57	0.99
18017306--18017347	21	2.0	21	81	9	50	64	0	16	19	1.30
18018655--18018693	2	19.5	2	100	0	78	48	0	0	51	1.00
18021894--18021936	19	2.4	18	84	7	52	32	4	0	62	1.15
18023414--18023446	16	2.1	17	88	11	52	12	3	3	81	0.91
18023917--18023947	6	5.2	6	96	0	53	12	3	0	83	0.75
18024357--18024399	8	5.5	8	88	5	52	13	6	0	79	0.93
18024364--18024398	15	2.3	15	90	0	52	17	5	0	77	0.96
18033620--18033645	3	8.7	3	100	0	52	69	0	30	0	0.89
18035685--18035717	14	2.3	15	89	5	50	66	0	6	27	1.15
18036839--18036950	32	3.5	30	75	16	100	39	5	6	49	1.51
18037668--18037707	19	2.0	21	85	9	57	45	0	0	55	0.99
18044872--18044905	18	2.0	18	88	11	54	8	0	14	76	1.01
18044872--18044905	17	2.1	16	88	5	50	8	0	14	76	1.01
18046992--18047041	12	4.3	12	76	19	52	64	2	0	34	1.05
18046963--18047059	34	2.8	33	81	7	113	59	1	0	39	1.04
18048239--18048273	14	2.6	13	91	8	61	60	5	2	31	1.35
18049974--18050054	3	28.3	3	73	14	64	32	2	6	59	1.35
18051002--18051035	7	5.0	7	85	7	52	82	0	2	14	0.79
18051003--18051033	13	2.4	13	94	0	53	83	0	3	12	0.75
18055064--18055122	9	5.9	9	79	16	55	76	0	5	18	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18055064--18055122	11	5.8	10	82	9	66	76	0	5	18	0.97
18055061--18055122	21	3.1	20	86	13	76	77	0	4	17	0.94
18055116--18055159	21	2.0	22	86	4	63	77	2	20	0	0.88
18055106--18055170	28	2.2	29	81	10	71	76	1	16	4	1.02
18055118--18055171	28	1.9	28	88	7	83	77	1	18	1	0.95
18056105--18056295	77	2.5	79	78	8	221	30	15	9	43	1.79
18056243--18056495	86	2.9	86	80	2	294	31	20	13	34	1.91
18056703--18056916	115	1.9	113	80	1	248	23	27	13	35	1.92
18057243--18057317	29	2.5	30	77	8	91	20	22	16	41	1.90
18057243--18057326	29	2.9	28	74	10	87	21	20	14	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133