genome.fa.s645.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  68  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13464073--13464151	14	5.4	14	73	18	63	46	3	0	49	1.19
13464104--13464160	16	3.6	16	73	21	57	47	3	0	49	1.18
13464430--13464479	25	2.0	25	84	7	66	54	4	2	40	1.31
13464612--13464645	13	2.6	13	90	0	50	47	0	0	52	1.00
13464611--13464654	22	2.0	21	82	4	52	50	0	0	50	1.00
13464623--13464656	16	2.2	15	89	5	50	55	0	0	44	0.99
13464733--13464780	14	3.3	14	80	16	53	41	2	0	56	1.11
13464732--13464813	40	2.0	40	81	9	96	42	2	1	53	1.21
13464478--13465033	279	2.0	277	95	0	995	46	3	4	45	1.40
13465065--13465099	14	2.4	14	90	4	52	45	0	0	54	0.99
13465063--13465108	24	1.9	24	86	8	67	47	0	0	52	1.00
13465586--13465617	14	2.4	14	94	5	57	50	0	0	50	1.00
13465677--13465723	16	2.8	16	87	6	67	46	0	0	53	1.00
13465768--13465814	23	2.0	23	83	8	58	53	2	2	42	1.25
13465779--13465889	23	5.3	21	73	13	88	47	0	1	50	1.11
13465779--13465855	14	5.9	14	69	22	60	49	0	1	49	1.09
13465779--13465848	27	2.7	27	81	12	69	50	0	0	50	1.00
13467709--13467758	21	2.5	20	78	12	57	50	0	2	48	1.12
13468200--13468245	15	3.0	16	75	18	53	50	0	0	50	1.00
13468309--13468351	18	2.3	18	96	4	77	44	0	0	55	0.99
13468517--13468572	18	3.1	17	77	10	58	48	3	5	42	1.43
13468534--13468584	22	2.3	21	75	15	50	49	1	1	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13468692--13468737	13	3.4	13	82	8	56	54	0	0	45	0.99
13469475--13469530	28	2.0	28	82	6	69	58	0	0	41	0.98
13469616--13469657	8	5.5	8	77	11	52	52	0	0	47	1.00
13470648--13470687	16	2.7	15	84	7	55	47	2	2	47	1.29
13470786--13470826	21	2.0	21	90	0	64	51	0	0	48	1.00
13470906--13470944	20	2.0	20	85	9	55	38	7	2	51	1.44
13471496--13471542	17	2.7	18	81	15	55	38	0	0	61	0.96
13471499--13471625	12	10.5	12	69	17	52	41	0	2	55	1.18
13471530--13471561	15	2.1	16	88	11	50	37	0	3	59	1.13
13472279--13473494	181	6.7	182	77	8	1026	40	7	9	41	1.67
13472288--13473321	361	2.9	360	76	9	849	40	7	10	41	1.67
13473678--13473738	17	3.3	19	80	19	67	55	0	4	39	1.21
13473759--13473852	17	5.2	17	70	18	66	47	0	0	52	1.00
13473770--13473827	10	6.0	10	76	15	68	51	0	0	48	1.00
13473748--13473861	36	3.2	36	74	18	112	49	0	0	50	1.00
13473784--13473834	22	2.5	20	79	14	59	50	0	0	49	1.00
13473775--13473862	17	5.5	17	67	23	50	51	0	0	48	1.00
13473916--13473964	13	3.6	14	77	17	50	48	2	0	48	1.12
13474538--13474572	16	2.3	15	90	5	52	42	2	0	54	1.15
13474523--13474570	19	2.5	19	96	0	87	43	4	0	52	1.20
13474576--13474600	13	1.9	13	100	0	50	44	0	8	48	1.32
13474568--13474607	12	3.2	12	86	6	53	40	0	7	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13474637--13474726	27	3.6	27	77	14	77	48	1	2	47	1.21
13474706--13474748	20	2.2	20	83	8	52	51	0	2	46	1.13
13475328--13475368	11	3.6	11	83	3	55	53	0	0	46	1.00
13475314--13475368	17	3.2	17	78	14	51	50	0	0	49	1.00
13475377--13475450	24	2.7	29	68	23	79	48	5	4	41	1.45
13475466--13475511	15	2.9	16	78	12	51	43	0	2	54	1.12
13475688--13475766	33	2.3	33	81	12	81	51	1	2	44	1.23
13476313--13476357	17	2.8	16	86	10	56	44	0	0	55	0.99
13476704--13476750	7	6.3	7	83	13	58	53	0	0	46	1.00
13476712--13476748	16	2.3	16	90	9	58	56	0	0	43	0.99
13476841--13476929	22	3.8	24	72	25	68	50	1	2	46	1.21
13476846--13476963	22	5.3	22	71	17	66	52	0	1	44	1.16
13476863--13476957	25	3.8	25	72	18	81	51	1	2	45	1.20
13477004--13477065	18	3.0	21	71	20	60	51	0	0	48	1.00
13477339--13477393	26	2.2	25	78	12	60	49	3	3	43	1.37
13477465--13477507	19	2.3	19	84	8	52	55	2	2	39	1.25
13477697--13477732	16	2.2	17	90	5	56	30	8	2	58	1.42
13477826--13477897	22	3.4	22	67	27	57	52	0	1	45	1.09
13478013--13478039	14	1.9	14	100	0	54	44	11	7	37	1.68
13478230--13478328	22	4.6	22	70	17	66	48	3	1	47	1.24
13478293--13478348	15	3.7	15	77	15	53	48	1	0	50	1.11
13478893--13478919	14	1.9	14	100	0	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478977--13479010	16	2.2	15	89	5	50	35	5	2	55	1.39
13479364--13479429	19	3.7	18	78	15	57	45	0	1	53	1.09
13479379--13479432	18	3.1	16	80	20	56	48	0	0	51	1.00
13479437--13479571	22	5.9	22	68	23	75	54	2	1	41	1.25
13479597--13479660	20	3.2	20	77	2	65	51	1	1	45	1.20
13479764--13479835	9	7.9	9	70	20	51	48	1	0	50	1.09
13479762--13479890	12	11.1	12	65	20	60	50	0	0	48	1.06
13479768--13479911	16	9.4	16	66	23	62	48	1	0	50	1.09
13479819--13479910	13	7.2	13	71	18	61	50	1	0	48	1.08
13479765--13479910	77	2.0	75	81	12	173	49	1	0	49	1.09
13479776--13479880	43	2.4	41	81	10	120	49	0	0	49	1.07
13479776--13479885	17	7.4	16	67	26	66	50	0	0	49	1.07
13480069--13480151	23	3.8	20	78	12	60	48	0	1	50	1.08
13480080--13480157	23	3.5	23	77	10	81	48	0	1	50	1.09
13480273--13480307	13	2.6	13	90	4	52	48	0	0	51	1.00
13480377--13480456	26	3.0	26	74	20	76	50	2	1	46	1.23
13480428--13480477	15	3.2	15	74	25	50	52	4	0	44	1.20
13480521--13480596	27	2.8	26	75	14	73	50	2	5	42	1.39
13481596--13483539	496	3.9	498	91	3	3054	31	10	17	41	1.82
13483527--13484820	475	2.7	473	88	2	1796	31	10	17	41	1.83
13484846--13485105	124	2.1	124	83	2	315	32	11	15	40	1.84
13484970--13486475	454	3.2	467	83	7	1915	32	11	17	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13486376--13486622	127	2.0	125	86	3	343	31	12	15	39	1.85
13487551--13487632	6	13.7	6	77	16	73	17	2	1	79	0.91
13487551--13487616	30	2.2	29	86	7	89	13	3	1	81	0.87
13487556--13487666	21	5.0	21	71	14	71	19	2	1	75	1.01
13487774--13487867	22	4.4	21	77	17	79	22	5	5	67	1.32
13487774--13487813	11	3.5	12	75	25	50	27	5	5	62	1.37
13488599--13488627	12	2.3	13	94	5	51	10	41	27	20	1.85
13488670--13488784	5	21.6	5	72	16	63	16	6	0	76	1.03
13488684--13488784	11	8.8	11	74	21	75	14	5	0	78	0.99
13488695--13488754	8	7.1	8	78	17	68	11	5	1	81	0.91
13488670--13488784	11	10.8	10	71	17	63	16	6	0	76	1.03
13488800--13489062	58	4.6	58	88	0	393	44	6	14	33	1.71
13488800--13489062	116	2.3	115	93	2	438	44	6	14	33	1.71
13490503--13490539	17	2.3	17	86	9	51	67	2	5	24	1.25
13490711--13490750	16	2.5	15	84	11	53	47	0	0	52	1.00
13490705--13490775	13	5.8	13	74	22	57	46	0	1	52	1.09
13490700--13490777	24	3.2	23	85	12	86	48	0	1	50	1.09
13490649--13490768	53	2.2	53	80	16	133	48	0	0	50	1.06
13491016--13491050	16	2.3	15	90	5	52	54	2	5	37	1.39
13491197--13491221	13	1.9	13	100	0	50	48	0	0	52	1.00
13491209--13491253	23	1.9	24	81	4	56	48	4	0	46	1.22
13492100--13492147	22	2.3	21	80	13	55	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13492131--13492186	23	2.4	24	79	11	62	46	1	1	50	1.22
13493631--13493688	20	3.1	19	79	13	57	50	3	0	46	1.18
13493798--13493837	22	1.9	22	85	10	57	52	2	0	45	1.14
13494218--13494270	21	2.5	21	81	12	63	50	3	3	41	1.38
13494929--13494988	21	2.9	21	74	16	61	36	0	6	56	1.26
13495518--13495576	22	2.6	23	78	5	66	57	1	0	40	1.09
13495610--13495646	15	2.5	15	87	12	51	35	2	2	59	1.26
13495813--13495856	23	2.0	21	82	8	52	52	2	0	45	1.13
13495808--13495866	26	2.4	23	75	24	59	49	1	0	49	1.11
13495879--13495954	33	2.5	30	79	12	84	51	3	0	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133