genome.fa.s645.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  50  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10586187--10586219	2	16.5	2	100	0	66	51	0	0	48	1.00
10591412--10591457	23	1.9	25	86	8	69	41	4	8	45	1.55
10593904--10594097	101	1.9	101	90	2	309	34	31	3	30	1.75
10595477--10595757	126	2.2	126	82	3	341	34	12	14	38	1.84
10597450--10597804	160	2.3	152	76	9	344	19	17	9	52	1.72
10597514--10597826	160	2.0	160	80	2	351	19	16	9	53	1.69
10600133--10600181	11	4.2	12	87	12	52	36	16	20	26	1.93
10600143--10600181	11	3.6	11	93	6	71	38	17	15	28	1.91
10600414--10600454	16	2.5	17	88	4	66	9	12	0	78	0.98
10600416--10600463	25	1.9	25	83	8	62	8	12	0	79	0.94
10600414--10600463	16	3.0	16	80	16	57	8	14	0	78	0.97
10605542--10605575	11	3.4	10	88	11	52	0	20	0	79	0.73
10607316--10607353	16	2.4	16	100	0	76	55	5	21	18	1.62
10609757--10609803	17	2.8	17	81	9	53	57	2	0	40	1.11
10610105--10610139	18	1.9	18	88	11	54	28	0	2	68	1.04
10618403--10618445	18	2.3	18	88	8	59	4	20	2	72	1.14
10621180--10621227	3	16.3	3	82	4	62	33	2	4	60	1.27
10621377--10621427	3	17.3	3	83	4	68	33	1	3	60	1.26
10621490--10621535	21	2.1	23	88	8	69	8	15	0	76	1.02
10621841--10621879	20	2.0	21	85	10	55	28	10	25	35	1.89
10621937--10621980	23	2.0	22	90	4	70	18	2	11	68	1.30
10622284--10622334	20	2.5	21	84	12	70	13	5	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624029--10624081	21	2.5	21	85	14	74	49	1	0	49	1.12
10624027--10624080	23	2.4	22	90	9	83	50	1	0	48	1.11
10629575--10629735	61	2.6	63	79	8	197	31	12	6	49	1.66
10629575--10629719	60	2.4	60	85	5	186	30	13	7	48	1.69
10629575--10629793	60	3.7	58	79	10	176	31	12	9	47	1.72
10629633--10629794	59	2.7	60	82	6	161	32	12	9	45	1.76
10629812--10629895	5	15.8	5	73	18	64	76	0	7	16	1.00
10629812--10629895	6	13.5	6	73	19	66	76	0	7	16	1.00
10629940--10629964	13	1.9	13	100	0	50	56	0	0	44	0.99
10630299--10630335	19	1.9	19	88	0	56	40	18	8	32	1.80
10630652--10630736	14	5.6	15	71	15	59	61	4	3	30	1.33
10630696--10630771	26	3.0	25	75	22	79	59	3	3	32	1.34
10630756--10630837	3	26.3	3	72	16	51	62	1	4	31	1.24
10631051--10631286	46	5.4	44	85	8	297	36	22	17	23	1.94
10631051--10631565	41	12.2	41	83	6	464	37	21	16	24	1.93
10631141--10631787	123	5.3	121	80	12	693	37	20	17	24	1.93
10631565--10631794	41	5.6	41	84	8	297	37	19	16	26	1.93
10631498--10631632	67	2.0	67	94	0	234	34	20	17	28	1.95
10631456--10631673	108	2.0	107	86	5	305	37	19	16	26	1.92
10631423--10631714	149	2.0	148	86	5	410	38	20	16	25	1.93
10631375--10631751	190	2.0	190	92	0	628	37	19	16	25	1.93
10631334--10631793	231	2.0	230	87	4	667	37	20	16	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632786--10632827	9	4.7	9	91	8	68	7	9	0	83	0.81
10632779--10632832	20	2.8	20	86	11	76	9	14	0	75	1.03
10632785--10632832	10	5.0	10	85	14	66	8	12	0	79	0.94
10643216--10643551	122	2.8	120	86	7	422	31	11	8	48	1.70
10643567--10643648	5	15.8	5	74	20	62	78	1	6	14	1.01
10643577--10643651	21	3.5	21	78	10	80	77	1	6	14	1.04
10643562--10643648	44	2.0	44	84	8	115	77	1	6	14	1.04
10643567--10643651	6	14.0	6	74	15	61	77	1	5	15	1.01
10643669--10643720	17	3.1	17	81	10	63	67	0	0	32	0.91
10644186--10644222	19	1.9	19	94	0	65	37	24	10	27	1.88
10644518--10644570	16	3.2	16	82	10	54	77	5	3	13	1.09
10644523--10644569	17	2.7	18	87	6	62	82	4	2	10	0.88
10644527--10644583	18	3.2	18	82	12	64	77	3	1	17	1.00
10644518--10644583	18	3.8	16	79	15	53	75	4	3	16	1.09
10644686--10644769	3	27.0	3	71	23	50	70	1	1	27	1.02
10644625--10644766	57	2.5	56	76	12	137	66	0	3	29	1.13
10644680--10644771	18	5.1	18	78	12	82	69	1	1	28	1.02
10644704--10644771	20	3.5	19	83	14	77	72	1	1	25	1.02
10645793--10645907	43	2.7	41	76	7	113	38	15	14	31	1.88
10647252--10647290	12	3.2	12	85	7	53	20	0	10	69	1.17
10647968--10648071	44	2.3	46	86	8	142	31	2	10	54	1.49
10647954--10648108	24	6.6	24	73	16	128	30	3	10	54	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10647968--10648086	47	2.6	43	84	10	141	31	3	10	54	1.51
10648097--10648271	55	3.2	55	80	6	205	28	5	13	53	1.61
10648176--10648233	20	2.7	21	77	15	64	25	5	15	53	1.63
10648202--10648272	33	2.2	32	85	7	90	28	4	14	53	1.59
10648223--10648318	32	3.0	31	84	7	104	29	2	12	56	1.48
10648341--10648379	19	2.1	19	90	0	60	28	5	12	53	1.60
10648482--10648559	20	4.0	20	75	11	72	37	6	8	47	1.61
10649265--10649292	2	14.0	2	100	0	56	50	0	50	0	1.00
10649721--10649752	2	15.5	2	93	6	55	46	0	3	50	1.17
10651372--10651397	2	13.0	2	100	0	52	0	50	0	50	1.00
10652004--10652167	64	2.6	63	79	5	179	39	10	7	42	1.70
10653543--10653592	23	2.3	22	83	10	66	56	0	2	42	1.11
10660921--10660981	25	2.5	25	89	5	90	22	19	13	44	1.85
10664042--10664144	53	2.0	51	81	11	120	27	11	10	50	1.71
10664865--10664915	18	2.8	19	79	11	61	0	43	0	56	0.99
10665646--10666117	42	11.3	42	72	13	126	47	14	12	25	1.80
10665681--10666116	83	5.3	83	77	8	194	47	13	13	25	1.80
10665680--10666120	41	10.6	42	77	6	305	46	14	12	25	1.80
10665730--10666119	83	4.7	83	81	6	387	47	14	12	25	1.79
10665730--10666117	166	2.3	165	84	3	476	47	14	12	25	1.80
10666323--10666370	22	2.1	23	84	3	62	33	12	14	39	1.84
10666479--10666536	21	2.7	22	83	2	82	37	20	8	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10667696--10667735	15	2.6	16	84	7	57	7	22	0	70	1.12
10668623--10668666	19	2.3	19	100	0	88	47	15	11	25	1.79
10670673--10670804	59	2.2	59	93	0	228	49	11	16	22	1.78
10671855--10672069	119	1.8	118	88	1	331	25	11	9	53	1.67
10671942--10672046	53	2.0	51	83	3	129	27	13	11	47	1.77
10672139--10672193	26	2.0	28	86	6	78	38	12	5	43	1.66
10672968--10672998	11	2.7	12	95	5	55	45	6	0	48	1.28
10682500--10682845	129	2.7	125	80	7	367	43	9	4	43	1.56
10682653--10682707	16	3.2	17	80	14	60	56	7	0	36	1.27
10682654--10682704	17	2.9	19	80	16	65	56	7	0	35	1.28
10682790--10682836	15	3.1	15	74	14	51	53	4	0	42	1.20
10684637--10684705	31	2.2	32	82	15	81	57	4	0	37	1.18
10685146--10685182	15	2.3	17	90	9	60	83	5	5	5	0.90
10685814--10685843	16	1.9	15	93	6	51	66	6	3	23	1.30
10685983--10686056	29	2.7	29	78	14	84	51	1	0	47	1.09
10686012--10686069	24	2.5	24	80	11	75	50	1	0	48	1.11
10686934--10687026	25	3.5	26	77	14	82	77	1	13	7	1.03
10686983--10687028	24	2.0	24	87	12	69	73	0	15	10	1.08
10686934--10686996	28	2.3	27	83	8	74	80	1	11	6	0.95
10687875--10687919	23	2.0	23	86	8	65	51	4	2	42	1.34
10687872--10687924	16	3.3	16	77	15	56	49	3	1	45	1.31
10688033--10688064	16	1.9	17	93	6	57	43	3	0	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688367--10688402	2	18.0	2	100	0	72	50	0	0	50	1.00
10690406--10690440	18	1.9	18	88	0	52	14	28	28	28	1.95
10692018--10692048	2	15.5	2	100	0	62	51	48	0	0	1.00
10693635--10693660	13	2.0	13	100	0	52	23	23	0	53	1.46
10696056--10696094	15	2.5	16	87	4	53	28	2	0	69	1.02
10697682--10697752	32	2.2	32	85	9	92	32	7	12	47	1.68
10700390--10700414	12	2.1	12	100	0	50	8	0	8	84	0.79
10703929--10703977	23	2.1	24	92	3	82	34	2	26	36	1.68
10705765--10705810	18	2.5	19	77	22	53	13	6	8	71	1.29
10710418--10710487	29	2.4	29	80	0	86	40	12	12	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133