genome.fa.s645.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  3  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524894--524983	15	6.0	15	71	21	55	54	1	0	44	1.07
524935--524985	24	2.1	23	82	13	59	50	0	0	49	1.00
525126--525173	13	3.6	13	81	13	62	54	0	2	43	1.12
525123--525167	15	3.2	14	84	9	65	55	0	2	42	1.12
527011--527039	13	2.3	13	94	5	51	13	0	0	86	0.58
532092--532121	14	2.1	14	93	0	51	16	13	3	66	1.37
533680--533803	63	2.0	63	81	9	146	30	20	14	34	1.92
534030--534072	19	2.3	19	100	0	86	20	27	6	44	1.77
539860--539904	22	2.0	23	86	4	65	68	15	13	2	1.30
550144--550177	9	3.7	9	88	4	50	44	23	8	23	1.81
551100--551163	23	2.8	23	86	9	87	78	0	12	9	0.97
551100--551163	32	2.0	32	93	0	110	78	0	12	9	0.97
551111--551170	18	3.7	16	79	14	61	76	0	13	10	1.01
552197--552313	43	2.7	42	78	8	119	27	16	21	35	1.94
552297--552657	44	8.5	43	73	11	255	23	13	19	43	1.86
552297--552580	127	2.2	126	82	7	326	23	13	19	43	1.86
552318--552639	84	3.8	84	87	2	398	23	12	19	44	1.85
552318--552639	169	1.9	168	83	7	420	23	12	19	44	1.85
552845--552986	52	2.7	53	77	11	139	28	4	2	64	1.23
553825--553852	5	5.6	5	100	0	56	17	0	0	82	0.68
553882--554097	58	3.7	59	81	9	237	42	6	13	37	1.71
559951--559981	6	5.2	6	92	0	53	32	32	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560088--560133	21	2.2	21	84	0	56	63	13	13	10	1.53
562284--562339	28	2.0	28	83	13	71	30	10	1	57	1.43
563599--563683	43	2.0	43	90	0	134	34	12	7	45	1.70
563631--563817	57	3.3	58	82	7	226	37	10	6	45	1.64
564622--564705	16	5.6	16	66	24	58	63	1	5	29	1.26
564655--564703	21	2.4	20	75	15	55	65	0	4	30	1.11
564610--564729	22	5.6	21	73	14	86	66	1	4	27	1.19
564935--565408	41	11.2	41	75	10	240	40	19	15	25	1.90
565041--565262	84	2.6	84	81	9	236	41	19	14	23	1.89
565067--565261	43	4.5	45	76	10	131	41	20	14	23	1.90
565305--565405	42	2.4	41	86	3	157	40	16	13	28	1.87
572706--572941	129	1.8	128	86	5	343	42	13	5	38	1.67
572813--572855	19	2.2	20	87	4	61	58	9	2	30	1.42
572707--573123	58	7.0	58	82	10	400	40	11	4	42	1.63
573111--573144	15	2.3	15	89	0	50	52	0	0	47	1.00
574882--574940	20	2.9	20	75	20	68	71	3	3	22	1.16
575141--575512	42	8.7	43	81	5	341	39	19	14	26	1.90
575141--575512	84	4.4	85	79	6	389	39	19	14	26	1.90
575144--575532	124	3.0	123	81	7	413	39	19	14	27	1.90
576097--576153	22	2.6	21	86	5	69	35	17	8	38	1.81
576553--576672	63	1.9	63	91	0	195	31	21	8	38	1.83
577372--577416	22	2.0	22	87	8	65	6	15	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577364--577419	8	7.1	8	76	15	55	8	16	0	75	1.05
577364--577446	39	2.1	39	86	4	114	8	18	0	73	1.07
581467--581814	58	5.9	58	82	4	378	38	10	4	46	1.60
583584--583622	21	1.9	20	84	5	51	71	0	5	23	1.05
586905--587032	64	2.0	64	100	0	256	32	14	10	42	1.80
590668--590743	30	2.5	30	85	6	100	40	1	2	55	1.22
591954--591984	2	15.5	2	93	0	53	48	0	3	48	1.17
592085--592109	12	2.1	12	100	0	50	24	24	36	16	1.94
597508--597954	56	7.7	56	81	7	387	39	13	6	41	1.69
597676--597938	62	4.4	60	81	7	322	40	12	6	41	1.67
597508--597947	57	7.5	61	81	5	327	39	13	6	40	1.69
597536--597955	113	3.6	116	80	7	345	39	12	5	41	1.67
597972--598059	5	17.8	5	72	19	62	78	0	5	15	0.93
597972--598059	6	13.5	6	72	18	61	78	0	5	15	0.93
598000--598064	28	2.2	30	86	13	91	78	0	6	15	0.94
598471--598564	21	4.7	20	78	12	77	69	2	7	21	1.24
598456--598548	38	2.5	38	79	11	102	67	2	7	22	1.27
598482--598546	19	3.4	18	76	19	60	72	0	7	20	1.09
598533--598586	19	2.9	17	78	15	54	66	0	3	29	1.09
605775--605850	30	2.5	30	89	0	116	39	1	2	56	1.21
606052--606089	20	1.9	20	89	10	60	63	2	2	31	1.22
607131--607155	12	2.1	12	100	0	50	24	24	36	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614915--614970	11	4.8	11	77	16	51	66	0	3	30	1.09
614917--614970	17	3.1	17	78	10	56	66	0	3	29	1.09
628207--628281	39	1.9	39	86	5	107	14	25	24	36	1.93
637369--637523	39	4.1	39	71	15	128	2	50	0	46	1.20
637543--637577	18	1.9	18	88	0	52	2	51	0	45	1.16
643201--643239	17	2.3	17	86	0	51	61	0	0	38	0.96
651597--651637	20	2.0	20	90	4	64	60	0	0	39	0.96
651598--651643	21	2.2	21	84	7	58	63	0	0	36	0.95
651580--651653	24	3.0	24	77	14	80	59	0	0	40	0.97
652462--652505	2	22.0	2	90	0	61	45	2	4	47	1.35
654437--654528	46	2.0	46	95	0	166	33	16	21	28	1.95
661424--661501	29	2.8	29	86	3	106	53	0	2	43	1.14
666321--666371	24	2.1	24	88	0	75	56	0	0	43	0.99
674702--674727	2	13.0	2	100	0	52	0	50	0	50	1.00
693502--693541	3	13.0	3	94	5	71	35	0	0	65	0.93
694330--694399	20	3.5	20	80	7	81	40	1	0	58	1.07
697930--697968	19	2.0	20	90	5	62	53	0	2	43	1.14
698065--698109	17	2.7	18	76	13	51	40	0	0	60	0.97
698147--698191	17	2.6	17	85	3	54	66	2	0	31	1.04
702051--702284	115	2.0	114	88	2	344	35	13	19	31	1.90
705991--706034	21	2.0	22	83	12	56	50	11	9	29	1.69
708503--708546	22	1.9	24	86	9	65	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708572--708603	10	3.1	10	95	4	55	56	0	0	43	0.99
715301--715333	13	2.4	14	85	10	50	60	3	30	6	1.36
717700--717744	21	2.2	20	84	11	56	51	0	0	48	1.00
717700--717744	20	2.2	21	84	11	58	51	0	0	48	1.00
718703--718736	13	2.9	11	84	16	50	35	11	0	52	1.38
722357--722393	2	18.0	2	88	5	56	45	2	2	48	1.30
725785--725829	16	2.8	16	82	3	54	71	0	24	4	1.05
727595--727631	14	2.6	14	91	0	56	48	0	0	51	1.00
727637--727663	5	5.4	5	100	0	54	81	0	0	18	0.69
727789--727893	52	2.0	53	92	1	176	44	14	10	30	1.78
732744--732784	22	1.9	21	85	5	55	63	7	9	19	1.48
733456--733546	46	2.0	45	82	2	110	36	13	19	30	1.90
733566--733596	2	15.5	2	93	0	53	48	0	3	48	1.17
735627--735829	63	3.3	62	73	8	180	30	9	18	41	1.83
740509--740547	20	2.0	20	89	0	60	43	5	0	51	1.24
744851--744890	21	1.9	21	85	10	55	42	0	0	57	0.98
757318--757378	23	2.7	23	81	0	77	42	18	8	31	1.79
757362--757436	34	2.2	34	80	0	87	46	12	12	29	1.77
758608--758752	62	2.3	60	75	12	141	37	14	11	36	1.82
758800--759001	62	3.3	59	77	10	217	36	14	12	36	1.84
768713--768747	17	2.1	17	89	10	54	31	2	0	65	1.07
777449--777975	130	4.1	128	85	4	649	34	9	15	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783470--783642	3	61.7	3	77	13	163	32	2	2	61	1.25
784093--784130	20	1.9	20	88	0	58	55	2	15	26	1.54
784143--784167	8	3.1	8	100	0	50	24	0	12	64	1.27
784470--784534	11	5.6	11	82	8	67	21	1	1	75	0.97
784475--784560	19	5.3	16	71	19	54	23	3	2	70	1.14
784480--784534	5	10.8	5	74	18	51	25	0	1	72	0.94
785697--785729	17	2.0	17	88	5	50	30	0	0	69	0.88
785772--785807	12	3.1	12	88	4	56	61	0	0	38	0.96
785769--785828	25	2.4	25	83	2	68	66	0	0	33	0.92
788005--788076	30	2.4	30	76	2	74	58	1	0	40	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133