genome.fa.s645.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  132  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26066960--26066992	13	2.6	13	90	4	50	87	0	9	3	0.63
26067997--26068322	86	3.8	86	78	7	311	35	17	10	35	1.84
26069529--26069651	3	42.7	3	69	11	78	30	4	4	61	1.33
26069591--26069644	5	10.2	5	78	9	54	35	1	1	61	1.18
26070388--26070430	19	2.3	18	84	7	59	9	2	4	83	0.87
26070424--26070481	24	2.4	24	79	2	71	22	6	1	68	1.22
26071357--26071397	12	3.2	13	80	13	50	48	9	0	41	1.36
26071353--26071397	8	5.6	8	83	0	54	48	11	0	40	1.39
26071355--26071446	18	5.2	18	67	10	64	46	9	3	40	1.53
26071353--26071397	14	3.4	14	79	17	51	48	11	0	40	1.39
26072588--26072698	47	2.4	44	82	7	123	18	1	28	51	1.56
26072588--26072697	15	7.1	15	71	12	71	18	1	28	51	1.56
26072588--26072697	23	4.7	23	72	15	84	18	1	28	51	1.56
26072606--26072674	16	4.4	16	69	5	52	18	1	27	52	1.54
26072634--26072740	22	4.9	22	76	14	80	20	0	28	51	1.48
26072922--26072963	9	4.8	9	82	5	50	26	0	2	71	0.98
26073149--26073204	29	1.9	29	89	7	87	23	0	3	73	0.99
26073168--26073208	11	3.8	11	81	12	50	21	0	4	73	1.02
26074047--26074093	24	2.0	23	83	4	58	6	2	23	68	1.24
26074783--26074883	12	8.7	12	71	10	75	44	8	6	39	1.63
26074766--26074925	6	26.8	6	72	1	61	41	8	9	41	1.67
26074786--26074910	16	7.5	16	70	8	70	43	8	8	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26074766--26074920	10	16.2	10	70	6	54	41	8	9	41	1.67
26074805--26074914	16	7.2	16	78	8	95	41	8	10	40	1.68
26075053--26075184	6	22.0	6	75	0	84	42	9	4	43	1.58
26075050--26075184	10	13.9	10	72	12	75	42	10	4	42	1.59
26075053--26075184	16	8.2	16	76	0	84	42	9	4	43	1.58
26083825--26085791	357	5.5	355	83	3	2279	36	14	11	37	1.83
26083825--26085791	711	2.8	710	85	3	2571	36	14	11	37	1.83
26087870--26087910	20	2.0	20	95	0	73	26	14	21	36	1.93
26095593--26095710	30	4.0	29	77	9	87	39	1	3	55	1.27
26095703--26095768	17	3.9	17	74	16	57	48	6	1	43	1.36
26095731--26095768	16	2.3	17	86	4	51	55	0	2	42	1.14
26096520--26096750	114	2.0	114	90	0	363	22	23	15	38	1.92
26097141--26097220	40	2.0	40	100	0	160	52	10	12	25	1.70
26097282--26097310	2	14.5	2	100	0	58	51	0	0	48	1.00
26112277--26112367	27	3.4	27	84	4	121	36	38	4	20	1.73
26116587--26116629	15	2.8	16	86	10	63	79	0	13	6	0.93
26123646--26123671	3	8.7	3	100	0	52	30	0	0	69	0.89
26124386--26124489	54	1.9	54	94	3	183	25	13	26	34	1.93
26128681--26128709	2	14.5	2	100	0	58	51	48	0	0	1.00
26141821--26141848	2	14.0	2	100	0	56	50	0	50	0	1.00
26142659--26142692	2	17.0	2	100	0	68	0	50	0	50	1.00
26142695--26142739	2	22.5	2	86	0	63	51	44	2	2	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26143241--26143270	14	2.1	14	93	0	51	26	13	23	36	1.92
26144458--26144482	5	5.0	5	100	0	50	60	0	0	40	0.97
26145168--26145315	60	2.5	58	83	2	188	37	14	4	43	1.64
26146917--26147112	85	2.3	85	80	3	207	48	14	16	20	1.81
26147313--26147415	17	6.1	17	75	4	82	38	6	15	38	1.74
26147310--26147413	34	3.1	33	73	5	91	40	6	14	38	1.72
26147301--26147460	68	2.3	68	80	1	185	40	8	14	36	1.76
26147353--26147483	17	7.6	17	69	8	59	39	8	18	33	1.81
26147395--26147625	69	3.4	68	73	7	207	40	12	18	29	1.86
26147429--26147619	34	5.6	34	76	4	168	40	12	18	28	1.87
26147702--26147757	21	2.6	22	75	16	62	33	12	8	44	1.73
26148893--26148944	16	3.1	16	76	15	52	9	7	0	82	0.84
26152874--26153317	60	7.6	57	82	8	468	37	13	4	44	1.65
26152874--26153309	119	3.7	116	84	7	519	36	13	5	44	1.65
26168506--26168552	20	2.3	20	82	7	60	74	6	10	8	1.22
26170589--26170732	63	2.3	63	81	11	163	47	9	8	34	1.66
26174434--26174459	2	13.0	2	100	0	52	50	0	0	50	1.00
26175158--26175202	20	2.2	20	92	0	72	26	17	6	48	1.72
26175437--26175485	12	4.0	12	82	12	64	28	0	0	71	0.86
26175446--26175503	23	2.5	24	88	8	84	31	0	0	68	0.89
26175446--26175505	12	5.1	12	79	4	68	31	0	0	68	0.90
26176054--26176093	21	2.0	21	85	5	55	45	2	2	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26176105--26176168	26	2.5	26	77	7	67	60	4	3	31	1.32
26176167--26176233	21	3.1	21	71	16	57	55	2	0	41	1.15
26177806--26178048	135	1.8	135	83	1	326	35	17	7	39	1.78
26180109--26180770	361	1.8	360	83	5	872	41	7	8	41	1.64
26180022--26180769	181	4.1	176	79	7	711	41	7	9	41	1.65
26180805--26184671	181	21.6	181	70	11	1341	41	7	9	42	1.65
26180124--26181453	685	1.9	687	80	6	1507	42	7	8	41	1.64
26180879--26183004	358	6.0	353	74	10	1143	41	7	9	42	1.65
26181164--26183005	539	3.5	516	77	10	1402	40	7	9	42	1.65
26182369--26182675	169	1.8	169	83	4	406	40	5	11	42	1.65
26183328--26183392	19	3.3	19	77	8	76	50	10	9	29	1.68
26184601--26184738	67	2.1	67	87	0	195	44	6	12	36	1.68
26184800--26185380	273	2.1	271	94	1	878	42	7	7	43	1.59
26185136--26187150	180	11.2	182	75	9	1322	40	7	9	42	1.66
26187534--26189464	179	10.8	179	75	8	1269	41	7	9	41	1.66
26188346--26188391	16	2.6	18	80	16	60	43	6	4	45	1.49
26188345--26188394	18	2.8	18	82	14	68	46	6	4	44	1.47
26187602--26189440	357	5.1	357	77	6	1419	40	7	9	41	1.67
26190311--26192784	180	13.8	179	74	8	1465	41	8	8	41	1.66
26193519--26193854	182	1.9	181	81	6	412	46	7	7	38	1.60
26194508--26195485	357	2.7	360	76	6	827	42	6	9	41	1.63
26194478--26195485	538	1.9	539	79	6	1169	41	6	9	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26193857--26198916	181	28.2	181	72	8	2418	40	7	9	42	1.66
26193969--26201734	539	14.5	534	73	10	2991	40	7	9	42	1.65
26193934--26201734	181	43.6	177	69	12	1895	40	7	9	42	1.65
26196916--26196964	16	2.8	18	75	15	57	44	8	8	38	1.64
26199115--26201516	720	3.3	717	75	9	1677	41	6	9	42	1.63
26199922--26201289	538	2.5	542	79	4	1314	41	6	9	42	1.63
26199832--26201736	901	2.1	894	78	8	1921	41	6	9	42	1.62
26201709--26201818	53	2.1	53	87	3	159	50	2	11	34	1.53
26204823--26204870	10	4.7	10	82	5	51	70	20	2	6	1.19
26208536--26208650	59	1.9	59	91	0	185	37	13	14	34	1.85
26211329--26211609	30	9.4	30	73	8	171	21	1	29	47	1.59
26211329--26211559	89	2.6	89	82	6	259	22	1	29	47	1.61
26211576--26211620	21	2.2	20	85	11	65	13	0	33	53	1.40
26211523--26211627	28	3.9	27	69	21	87	16	0	34	49	1.46
26211611--26211674	30	2.1	30	86	11	87	28	0	25	46	1.53
26213224--26213282	29	2.0	31	83	6	77	11	0	6	81	0.87
26213311--26213343	12	2.8	12	82	17	50	81	0	0	18	0.68
26215667--26215696	6	5.0	6	91	0	51	33	30	16	20	1.94
26215668--26215708	12	3.4	12	86	0	55	31	24	19	24	1.98
26216860--26216904	14	3.0	15	90	6	65	73	0	0	26	0.84
26216912--26216965	21	2.5	23	79	14	69	59	0	0	40	0.98
26218454--26218520	27	2.5	27	85	4	91	25	34	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26222131--26222170	2	20.0	2	100	0	80	50	0	0	50	1.00
26222903--26223140	79	3.0	79	98	0	458	21	15	6	55	1.63
26223879--26223933	21	2.6	22	80	13	62	65	1	0	32	1.03
26224083--26224121	20	2.0	20	89	0	60	51	5	2	41	1.38
26226090--26226131	13	3.2	13	86	6	59	33	2	0	64	1.07
26229220--26229252	14	2.4	14	100	0	66	54	9	0	36	1.32
26237575--26237625	22	2.3	23	86	10	70	54	0	0	45	0.99
26237587--26237633	10	4.6	10	77	12	51	57	0	0	42	0.98
26237638--26237714	31	2.5	31	82	6	84	46	1	2	49	1.23
26237656--26237714	32	1.9	31	86	6	84	52	1	1	44	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133