genome.fa.s645.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  78  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15460454--15460503	16	3.1	16	83	13	66	70	10	8	12	1.35
15467492--15467531	21	2.0	20	85	5	53	80	2	17	0	0.83
15468437--15468469	5	6.4	5	93	6	57	81	0	18	0	0.68
15468437--15468469	16	2.1	16	100	0	66	81	0	18	0	0.68
15469982--15470094	51	2.2	52	85	4	149	28	20	18	32	1.96
15470008--15470161	51	3.0	51	76	7	132	31	20	12	35	1.91
15470161--15470213	20	2.9	17	74	17	52	22	15	18	43	1.87
15471410--15471447	19	2.0	20	84	5	51	73	0	23	2	0.95
15472437--15472475	13	2.9	13	85	7	51	41	46	0	12	1.42
15472437--15472478	14	3.1	14	89	3	59	40	47	0	11	1.40
15475026--15475059	4	8.5	4	86	0	50	20	0	5	73	1.04
15475029--15475071	8	5.4	8	88	0	50	13	0	11	74	1.07
15476124--15476152	13	2.1	14	93	6	51	24	0	13	62	1.32
15480342--15480554	84	2.6	83	82	6	236	30	10	17	40	1.83
15484653--15484704	24	2.1	25	82	10	63	28	3	11	55	1.53
15485176--15485214	20	2.0	20	89	0	60	10	30	5	53	1.56
15486901--15486942	17	2.5	17	92	0	66	33	7	19	40	1.78
15487773--15487818	11	4.4	11	78	15	53	0	19	0	80	0.71
15487780--15487819	15	2.7	15	85	14	57	0	17	0	82	0.67
15491174--15491204	2	15.5	2	100	0	62	0	48	0	51	1.00
15491746--15491826	25	3.2	25	91	1	126	53	6	13	27	1.63
15492962--15493017	13	4.3	12	78	13	58	17	3	37	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15494110--15494144	14	2.3	16	90	9	56	20	11	8	60	1.57
15497430--15497481	23	2.3	23	83	12	63	23	19	9	48	1.78
15505565--15505604	13	3.1	13	81	0	53	57	0	0	42	0.98
15505564--15505613	26	1.9	26	83	0	64	62	0	0	38	0.96
15506418--15506754	159	2.1	159	80	6	378	39	12	18	28	1.88
15508361--15508550	103	1.8	102	80	10	226	39	11	18	31	1.85
15508557--15508845	149	1.9	150	79	6	327	36	11	18	32	1.87
15538600--15538633	16	2.1	17	88	5	52	11	0	47	41	1.40
15538589--15538645	29	1.9	30	85	3	80	10	0	43	45	1.38
15538617--15538660	12	3.6	12	87	3	52	15	0	36	47	1.46
15538639--15538685	19	2.5	20	75	10	53	17	2	31	48	1.58
15538858--15538941	26	3.3	26	78	8	91	15	5	36	41	1.72
15540420--15540695	143	1.9	143	79	7	310	41	12	12	33	1.81
15541151--15541481	49	6.7	50	81	10	324	38	16	12	33	1.86
15541153--15541479	100	3.3	96	79	10	322	38	16	12	33	1.86
15544954--15545007	27	2.0	27	96	0	99	25	1	37	35	1.67
15551019--15551111	20	4.6	20	82	1	96	32	5	8	53	1.54
15551200--15551350	79	1.9	79	93	0	257	30	4	11	52	1.58
15551192--15551873	101	6.8	99	74	11	534	29	4	11	53	1.57
15551158--15551898	61	12.3	60	72	13	352	29	4	11	54	1.56
15551276--15551917	180	3.5	183	72	13	597	29	5	11	53	1.58
15551163--15551976	221	3.7	219	74	11	669	29	5	11	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15551190--15551773	20	29.3	19	69	12	136	29	5	11	53	1.58
15551813--15551868	13	4.1	14	75	20	57	30	0	8	60	1.27
15551813--15551868	14	4.2	13	71	24	53	30	0	8	60	1.27
15551312--15551975	322	2.1	322	94	2	1156	29	5	11	53	1.59
15551158--15551976	41	20.3	41	83	5	693	29	5	11	53	1.57
15551988--15552048	27	2.3	27	88	0	86	31	1	6	60	1.32
15552173--15552220	17	2.5	20	80	12	57	33	6	10	50	1.62
15560224--15560329	43	2.5	42	81	7	124	30	17	14	37	1.90
15560216--15560637	42	10.0	42	76	8	297	28	15	19	36	1.92
15560216--15560637	85	5.0	85	76	7	360	28	15	19	36	1.92
15560911--15560948	20	2.0	19	85	10	51	13	2	7	76	1.11
15561561--15561628	20	3.9	19	67	32	62	32	5	10	51	1.60
15561580--15561633	15	3.4	15	75	10	54	29	5	11	53	1.59
15561571--15561633	31	2.0	33	90	6	103	31	4	9	53	1.54
15561571--15561617	16	3.0	16	71	6	51	29	6	8	55	1.55
15561677--15561718	19	2.2	20	86	4	59	30	7	7	54	1.54
15561736--15561891	61	2.8	53	74	20	147	30	3	9	57	1.47
15561805--15562025	41	5.5	41	87	3	331	28	4	13	53	1.57
15561808--15562025	79	2.7	82	87	2	334	28	4	13	53	1.58
15561805--15562025	120	1.8	123	93	2	385	28	4	13	53	1.57
15561892--15562119	100	2.3	99	84	7	266	28	4	14	53	1.59
15561874--15562163	141	2.1	138	88	1	427	27	5	13	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15561837--15562204	59	6.1	60	74	13	276	28	5	13	52	1.62
15561837--15562214	179	2.1	182	83	6	489	28	5	13	52	1.61
15561810--15562214	220	1.8	220	87	3	600	28	5	13	52	1.61
15562019--15562214	41	4.9	41	87	4	260	28	6	13	51	1.66
15562019--15562213	39	4.9	39	85	6	234	28	6	13	51	1.66
15561803--15562208	20	20.2	21	69	15	137	29	5	13	52	1.61
15563811--15563925	59	1.9	59	98	0	221	34	23	8	33	1.86
15568602--15568651	22	2.3	22	96	0	91	46	10	10	34	1.71
15570743--15570801	30	2.0	30	96	0	109	33	8	15	42	1.77
15576629--15576679	21	2.4	21	87	6	68	45	25	7	21	1.79
15579830--15579860	15	2.1	15	93	0	53	54	6	12	25	1.62
15580003--15580043	10	4.2	10	79	14	50	63	9	0	26	1.25
15580263--15580331	21	3.1	21	73	10	57	36	1	4	57	1.27
15580359--15580409	19	2.6	19	84	6	57	35	3	1	58	1.28
15580402--15580449	20	2.3	21	86	10	64	29	0	10	60	1.30
15580384--15580452	21	3.4	20	72	16	52	33	1	8	56	1.39
15589541--15589575	16	2.1	17	89	5	54	54	22	11	11	1.68
15589628--15589662	18	1.9	18	88	0	52	60	8	5	25	1.49
15591016--15591081	25	2.5	27	80	4	64	72	6	9	12	1.26
15591791--15591815	13	1.9	13	100	0	50	40	36	8	16	1.77
15597924--15597971	7	6.9	7	90	9	80	0	0	12	87	0.54
15605589--15605708	62	1.9	62	94	0	213	37	17	13	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15606065--15606106	22	1.9	22	85	9	59	45	14	7	33	1.72
15609536--15609751	72	3.0	72	95	0	387	34	13	11	40	1.81
15609847--15609885	19	2.1	19	90	0	60	23	20	23	33	1.97
15613480--15613971	210	2.4	205	84	3	626	33	17	14	34	1.90
15613899--15614114	64	3.4	63	78	8	192	33	12	14	38	1.84
15613992--15614130	64	2.2	64	82	1	172	33	14	12	39	1.83
15618308--15618417	18	6.0	19	71	17	74	50	11	6	31	1.64
15618361--15618391	16	1.9	16	93	0	53	48	12	6	32	1.67
15618541--15618615	19	3.3	23	71	22	70	53	10	5	30	1.58
15618695--15618855	20	7.8	20	70	12	101	55	9	6	29	1.56
15618779--15618850	32	2.2	32	90	4	110	59	9	4	26	1.47
15618819--15618994	24	7.8	23	71	14	102	51	10	5	32	1.59
15618880--15618975	45	2.1	47	82	7	117	53	11	4	31	1.56
15618952--15618994	21	2.0	21	86	0	59	55	13	2	27	1.51
15618974--15619024	17	3.0	17	80	8	59	50	9	7	31	1.64
15619655--15619684	12	2.5	12	94	0	51	70	13	0	16	1.18
15620893--15620954	21	3.1	21	82	8	69	1	17	1	79	0.90
15620910--15620983	26	2.8	27	80	16	91	4	22	0	72	1.01
15621471--15621500	11	2.6	11	94	5	51	0	13	0	86	0.57
15621459--15621498	21	1.9	21	89	0	62	2	20	0	77	0.88
15621594--15621645	26	2.0	26	88	3	77	57	7	17	17	1.62
15625352--15625386	18	1.9	18	88	0	52	11	5	0	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15626335--15626368	17	2.0	17	100	0	68	23	17	11	47	1.81
15627409--15627472	19	3.3	19	86	2	92	18	17	21	42	1.89
15627421--15627482	20	3.2	20	88	2	81	19	14	20	45	1.85
15627485--15627553	20	3.5	19	73	11	59	24	4	20	50	1.66
15627577--15627633	20	2.8	20	76	7	62	21	5	24	49	1.70
15627781--15627827	3	15.7	3	100	0	94	34	0	0	65	0.93
15627812--15627908	40	2.4	39	79	6	113	26	7	2	63	1.31
15631175--15631223	21	2.3	21	92	0	80	22	26	10	40	1.86
15631602--15631679	29	2.7	29	82	6	77	65	2	1	30	1.14
15634632--15634694	9	6.6	10	71	23	55	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133