genome.fa.s645.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  118  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22691332--22691577	136	1.8	134	85	5	352	35	17	16	30	1.93
22692384--22692408	2	12.5	2	100	0	50	48	0	0	52	1.00
22696297--22696358	18	3.4	18	71	8	54	45	0	0	54	0.99
22696285--22696333	24	2.0	25	84	11	66	46	0	0	53	1.00
22696336--22696364	15	2.0	15	93	6	51	51	0	0	48	1.00
22696358--22696391	15	2.1	17	89	10	54	64	2	0	32	1.08
22696797--22696853	26	2.2	26	87	0	78	47	3	1	47	1.29
22696802--22696870	31	2.3	30	82	2	84	49	2	1	46	1.25
22698284--22698393	9	11.6	9	69	14	51	58	3	4	33	1.36
22698284--22698347	20	3.3	19	79	12	67	59	3	4	32	1.34
22698284--22698350	30	2.2	31	79	12	77	58	2	4	34	1.34
22698589--22698621	10	3.3	10	91	0	57	63	3	0	33	1.10
22698606--22698674	16	4.1	16	71	12	57	62	5	2	28	1.33
22698660--22698706	22	2.1	22	84	0	58	72	2	2	23	1.06
22698708--22698750	21	2.1	20	82	4	50	72	4	2	20	1.14
22699150--22699174	2	12.5	2	100	0	50	48	0	0	52	1.00
22699556--22699601	23	1.9	25	82	8	60	54	0	2	43	1.12
22713146--22714142	369	2.7	364	86	3	1350	26	22	30	20	1.98
22716610--22716653	21	2.0	21	82	8	52	38	27	0	34	1.57
22717750--22717793	23	1.9	23	95	0	79	36	0	25	38	1.56
22717783--22717846	21	3.0	21	86	4	85	45	0	23	31	1.53
22719101--22719138	17	2.3	17	86	4	51	60	0	5	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22719157--22719202	23	1.9	25	86	8	69	43	4	0	52	1.21
22719852--22719884	16	1.9	18	88	11	52	57	3	0	39	1.14
22730734--22730769	18	2.0	18	100	0	72	77	0	0	22	0.76
22731317--22731367	22	2.3	22	100	0	102	49	23	5	21	1.71
22750949--22751103	60	2.6	58	84	8	186	32	10	10	46	1.72
22751128--22751258	4	32.8	4	73	9	106	70	6	1	20	1.18
22758425--22758465	22	1.9	21	90	5	64	0	2	14	82	0.76
22758415--22758464	15	3.3	15	77	0	55	0	4	10	86	0.71
22759159--22759208	15	3.3	15	94	2	82	0	0	12	88	0.53
22759158--22759209	21	2.6	21	93	6	90	0	0	13	86	0.57
22759159--22759209	5	10.0	5	85	4	66	0	0	13	86	0.58
22763161--22763212	22	2.3	23	87	12	72	63	0	1	34	1.06
22764728--22764759	12	2.6	13	90	9	50	90	3	6	0	0.53
22773718--22773752	2	17.5	2	87	0	52	51	0	2	45	1.16
22774198--22774233	18	2.0	18	94	0	63	75	0	0	25	0.81
22776190--22776239	16	3.3	16	75	16	52	32	24	6	38	1.79
22777053--22777084	12	2.4	14	90	10	50	62	6	15	15	1.51
22777194--22777241	25	1.9	25	83	8	62	39	4	8	47	1.53
22777412--22777452	18	2.3	18	87	8	57	46	0	4	48	1.23
22777537--22777604	22	2.9	23	78	10	68	38	2	2	55	1.30
22777869--22777897	15	2.0	15	93	6	51	34	13	10	41	1.79
22778034--22778079	18	2.6	18	86	10	60	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22782834--22782879	18	2.6	18	100	0	92	60	10	0	28	1.30
22785067--22785115	17	2.8	17	82	14	55	20	0	2	77	0.87
22785065--22785116	6	8.7	6	83	12	63	19	0	1	78	0.84
22785065--22785159	28	3.2	28	77	15	95	20	3	3	73	1.10
22785065--22785115	23	2.2	24	86	10	70	19	0	1	78	0.85
22785223--22785282	11	5.5	11	75	15	54	31	3	1	63	1.20
22785219--22785333	21	5.7	20	71	23	64	27	4	2	65	1.25
22785243--22785291	25	2.0	25	88	8	73	30	4	0	65	1.11
22785065--22785289	12	18.8	12	65	25	54	25	3	3	67	1.23
22785244--22785300	25	2.1	28	81	15	68	31	3	1	63	1.22
22785259--22785348	42	2.1	43	80	15	100	24	4	3	67	1.24
22786206--22786377	5	32.8	5	72	15	66	18	3	2	75	1.08
22786224--22786252	4	7.5	4	92	7	51	20	0	0	79	0.74
22786223--22786347	11	11.2	11	70	17	53	18	3	3	75	1.08
22786275--22786377	39	2.6	39	76	17	104	13	5	1	78	1.01
22786283--22786382	30	3.2	31	77	20	93	14	6	2	78	1.03
22786285--22786382	38	2.5	38	83	9	110	14	5	2	78	1.01
22786395--22786834	58	7.7	56	78	6	454	42	7	14	36	1.73
22786396--22786836	114	3.9	113	85	6	586	41	7	14	36	1.74
22786395--22786890	57	8.7	58	78	5	438	42	7	14	36	1.73
22786395--22786890	172	2.9	170	79	5	534	42	7	14	36	1.73
22791538--22792398	236	3.7	236	88	0	1274	36	15	14	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22791538--22792454	471	1.9	471	88	1	1392	36	15	14	34	1.88
22799528--22799593	34	1.9	34	93	0	114	46	9	9	34	1.67
22803530--22803576	23	2.0	23	91	0	76	17	6	6	70	1.30
22803983--22804058	33	2.3	33	84	4	91	23	7	1	67	1.25
22804015--22804078	17	4.0	16	77	16	62	18	9	1	70	1.22
22803937--22804089	85	1.9	79	83	8	198	21	7	1	69	1.21
22804985--22805033	5	9.4	5	85	14	64	16	2	0	81	0.78
22804985--22805033	21	2.3	21	90	10	82	16	2	0	81	0.78
22805043--22805330	58	4.9	58	81	10	336	44	7	13	34	1.72
22805051--22805328	120	2.4	117	84	10	361	44	7	13	34	1.72
22808488--22808550	8	8.1	8	72	13	51	79	0	15	4	0.90
22808487--22808548	19	3.3	19	80	10	74	80	0	14	4	0.87
22809651--22809709	22	2.7	22	86	5	75	37	8	20	33	1.83
22810173--22810260	41	2.2	40	87	8	70	23	14	23	37	1.92
22810173--22810601	42	10.1	41	80	11	309	27	17	20	35	1.94
22810212--22810314	52	2.0	51	94	1	179	31	14	25	29	1.95
22810333--22810601	83	3.2	82	87	3	369	26	18	19	36	1.95
22811324--22811373	25	2.0	24	84	3	64	30	2	12	56	1.47
22811870--22811918	23	2.1	23	85	7	64	28	0	2	69	1.00
22811886--22811923	19	2.0	19	85	10	51	31	0	5	63	1.17
22811939--22811993	6	10.4	5	85	14	51	16	5	0	78	0.93
22811946--22811990	6	7.7	6	90	5	56	15	6	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22811946--22811990	12	3.8	12	88	2	65	15	6	0	77	0.96
22812003--22812234	58	3.9	58	83	8	283	43	9	14	33	1.77
22813528--22813560	13	2.6	13	90	4	50	0	24	0	75	0.80
22816672--22816750	35	2.3	35	88	0	122	35	15	17	31	1.91
22818106--22818147	20	2.0	22	86	9	61	35	4	2	57	1.33
22818422--22818453	16	2.0	16	100	0	64	25	0	6	68	1.12
22820258--22820283	12	2.2	12	100	0	52	46	0	30	23	1.53
22820558--22820583	5	5.2	5	100	0	52	19	0	0	80	0.71
22821064--22821412	59	5.8	58	80	12	384	36	12	7	43	1.71
22821064--22821403	125	2.8	117	83	10	452	36	13	7	43	1.72
22821412--22821480	5	13.8	5	75	17	56	76	0	2	20	0.91
22821408--22821480	15	5.0	14	78	18	78	76	0	2	20	0.90
22821408--22821526	4	29.0	4	69	23	54	71	0	2	25	1.04
22821408--22821479	21	3.4	22	78	17	82	76	0	2	20	0.91
22821410--22821481	17	4.3	17	77	12	78	77	0	2	19	0.88
22821408--22821526	17	7.2	16	66	25	54	71	0	2	25	1.04
22822364--22822397	9	3.7	9	88	4	50	82	5	0	11	0.83
22822410--22822499	22	4.1	22	75	18	80	61	6	4	27	1.41
22822518--22822626	24	4.7	23	73	17	82	67	1	2	27	1.14
22822551--22822623	15	4.9	15	75	15	71	71	1	1	26	1.02
22822551--22822617	11	5.8	11	71	22	57	70	1	1	26	1.05
22822552--22822637	26	3.4	25	77	16	90	70	2	1	25	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22822550--22822624	30	2.5	30	80	12	82	70	1	1	26	1.03
22822619--22822643	13	1.9	13	100	0	50	72	8	0	20	1.10
22822554--22822637	43	2.0	43	83	9	109	71	2	1	25	1.05
22822572--22822649	24	3.2	24	74	16	70	71	3	1	23	1.09
22822884--22822917	13	2.6	13	90	0	50	64	5	2	26	1.30
22826992--22827040	24	2.0	24	84	0	62	38	6	8	46	1.58
22827424--22827545	62	2.0	62	88	0	181	40	13	22	22	1.89
22827647--22827716	28	2.5	28	88	4	97	37	11	12	38	1.80
22829039--22829076	18	2.1	19	85	14	53	42	21	10	26	1.85
22829769--22829803	14	2.6	13	86	8	52	40	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133