genome.fa.s645.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  44  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9505263--9505306	10	4.6	10	83	8	56	68	0	0	31	0.90
9505421--9505462	21	2.0	21	86	9	59	47	7	0	45	1.30
9505405--9505487	30	2.8	28	82	13	96	49	6	0	44	1.27
9505458--9505503	11	4.4	11	91	8	78	58	0	0	41	0.98
9505428--9505503	21	3.7	21	81	16	88	53	2	0	43	1.14
9505410--9505502	10	9.6	9	74	19	71	52	4	0	43	1.21
9505419--9505503	11	8.4	10	77	18	70	52	3	0	43	1.18
9505606--9505662	19	3.0	20	73	17	57	57	10	0	31	1.32
9505699--9505726	11	2.5	11	100	0	56	57	0	0	42	0.99
9505751--9505797	18	2.6	17	80	9	58	63	2	0	34	1.06
9505959--9505998	17	2.3	18	86	4	55	15	0	10	75	1.05
9506127--9506184	20	3.0	20	82	7	57	44	0	8	46	1.34
9506243--9506279	19	1.9	19	89	10	58	54	0	0	45	1.00
9506243--9506285	9	4.8	9	84	15	54	53	0	0	46	1.00
9506243--9506296	28	1.9	28	85	7	74	48	0	1	50	1.11
9506331--9506374	21	2.1	21	87	8	63	27	2	15	54	1.53
9506351--9506428	10	7.8	10	76	11	61	44	1	10	43	1.46
9506371--9506443	19	3.7	19	77	16	60	47	1	6	43	1.38
9506371--9506443	9	7.4	10	75	16	55	47	1	6	43	1.38
9506414--9506452	20	2.0	20	84	0	51	46	0	7	46	1.31
9506980--9507032	22	2.3	23	80	3	63	66	0	5	28	1.15
9507220--9507278	24	2.7	21	82	15	66	59	0	1	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9515461--9515697	69	3.4	69	88	0	330	22	25	21	30	1.98
9517511--9517546	12	3.0	13	88	11	51	36	0	0	63	0.94
9517520--9517563	16	2.6	17	82	7	54	34	0	0	65	0.93
9521246--9521271	9	2.9	9	100	0	52	30	0	11	57	1.34
9527872--9527899	3	9.3	3	100	0	56	67	0	0	32	0.91
9533784--9533832	26	2.0	26	88	8	75	20	12	8	59	1.58
9537814--9537862	25	2.0	25	88	8	73	20	16	6	57	1.60
9541822--9541905	33	2.6	32	75	9	89	36	7	13	42	1.71
9555211--9555282	31	2.2	31	80	7	81	37	11	13	37	1.81
9555287--9555324	18	2.2	18	90	4	60	39	13	5	42	1.66
9555437--9555473	18	2.1	17	90	5	56	37	16	10	35	1.83
9557311--9557355	15	2.9	15	83	3	63	13	8	0	77	0.98
9562247--9562403	78	2.0	79	92	1	262	28	15	15	40	1.88
9563956--9563994	20	2.0	20	85	5	53	28	5	17	48	1.68
9569655--9569700	11	4.2	11	83	10	58	73	0	21	4	1.00
9569651--9569693	22	1.9	23	95	4	79	69	0	25	4	1.07
9570674--9570719	14	3.3	14	90	0	65	50	19	0	30	1.48
9570674--9570738	28	2.4	27	82	7	78	47	21	0	30	1.51
9574159--9574291	62	2.1	64	83	5	164	48	3	2	45	1.32
9574898--9574923	7	3.7	7	100	0	52	11	26	30	30	1.92
9579769--9579831	30	2.1	30	100	0	126	28	12	31	26	1.93
9584693--9584742	2	25.0	2	91	0	73	44	0	6	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9584693--9584742	20	2.5	20	96	0	91	44	0	6	50	1.26
9584919--9584961	3	14.3	3	100	0	86	32	0	0	67	0.91
9586272--9586333	21	2.8	22	88	9	90	24	3	4	67	1.25
9586275--9586338	24	2.8	22	88	9	85	25	1	4	68	1.17
9586275--9586343	21	3.1	21	79	18	70	26	2	4	66	1.24
9586976--9587010	6	5.8	6	93	0	52	20	0	0	80	0.72
9588608--9588659	27	1.9	27	96	0	95	32	36	5	25	1.80
9589000--9589034	12	3.0	11	88	12	52	20	2	0	77	0.90
9589009--9589049	17	2.5	17	84	11	50	19	0	4	75	0.98
9595678--9595732	27	2.0	27	100	0	110	29	10	20	40	1.86
9596070--9596174	44	2.4	44	82	6	115	33	11	17	38	1.85
9596290--9596331	21	2.0	21	100	0	84	33	14	19	33	1.91
9596433--9596492	31	1.9	31	87	12	88	41	6	11	40	1.68
9596493--9596529	19	1.9	19	88	0	56	43	13	10	32	1.79
9596646--9596751	43	2.5	43	82	0	122	26	12	17	43	1.85
9596785--9597120	43	7.9	42	76	8	254	28	13	13	44	1.81
9596784--9597075	87	3.4	87	75	9	224	28	13	11	45	1.79
9596785--9597100	126	2.5	128	83	6	374	28	13	12	44	1.81
9597442--9597489	24	2.0	24	95	0	87	31	8	2	58	1.39
9597449--9597488	11	3.5	11	87	12	62	32	7	0	60	1.25
9608381--9608422	9	4.7	9	91	5	59	21	0	9	69	1.17
9608381--9608424	18	2.4	19	85	11	65	22	0	9	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9608383--9608436	18	3.3	15	78	19	54	25	0	7	66	1.17
9608917--9608984	31	2.2	31	81	0	82	27	23	22	26	1.99
9609396--9609439	23	1.9	23	85	0	61	6	4	6	81	0.97
9609484--9609521	10	3.9	10	83	16	53	18	0	0	81	0.69
9609485--9609522	14	2.6	15	84	16	53	18	0	0	81	0.69
9609540--9609762	57	3.8	57	87	7	333	43	8	14	33	1.76
9609548--9609762	118	1.8	118	92	5	371	43	7	14	33	1.75
9614290--9614323	12	2.8	12	90	0	59	32	0	17	50	1.47
9614869--9615308	41	10.8	40	91	5	692	22	18	22	36	1.95
9615314--9615429	1	116.0	1	86	0	160	93	6	0	0	0.36
9615314--9615429	55	2.1	54	92	3	196	93	6	0	0	0.36
9616115--9616182	31	2.2	31	86	0	91	26	23	23	26	2.00
9616605--9616648	23	1.9	23	85	0	61	6	4	6	81	0.97
9616641--9616666	12	2.2	12	100	0	52	15	0	7	76	0.99
9616692--9616716	10	2.5	10	100	0	50	16	0	0	84	0.63
9616694--9616729	14	2.6	14	91	8	56	19	0	0	80	0.71
9620223--9620267	17	2.6	17	89	0	63	37	13	11	37	1.80
9624518--9624567	26	2.0	26	88	4	75	24	12	22	42	1.87
9624702--9624752	17	3.0	18	83	11	63	29	0	1	68	1.00
9624724--9624753	14	2.1	15	93	6	53	23	0	0	76	0.78
9625969--9626007	20	1.9	21	84	5	53	10	25	10	53	1.66
9625969--9626008	21	1.9	21	85	10	55	10	25	10	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9625982--9626031	24	2.2	22	82	7	55	10	20	8	62	1.52
9626217--9626282	32	2.0	32	85	8	89	0	9	7	83	0.82
9626222--9626282	29	2.1	29	81	6	70	0	8	8	83	0.81
9627410--9627520	18	6.4	17	67	23	54	30	2	0	66	1.05
9633270--9633494	6	34.8	6	68	11	83	48	32	1	18	1.57
9633270--9633494	13	17.4	12	66	13	83	48	32	1	18	1.57
9633265--9633353	39	2.3	38	81	9	99	47	32	0	20	1.50
9633390--9633442	19	2.7	20	82	5	54	47	33	0	18	1.49
9634799--9634862	24	2.7	24	92	2	103	51	4	1	42	1.32
9636035--9636084	13	3.7	14	80	15	61	54	0	0	46	1.00
9638951--9639500	161	3.4	158	81	2	571	43	15	7	33	1.75
9639408--9639602	104	1.9	104	86	2	284	44	12	8	34	1.72
9639271--9639764	265	1.9	265	83	3	645	43	13	9	33	1.76
9639512--9640342	161	5.2	158	77	7	780	42	15	10	32	1.80
9638951--9640028	587	1.8	588	82	4	1395	42	14	9	32	1.78
9639086--9639899	426	1.9	426	82	3	1010	43	14	9	33	1.77
9639516--9640343	322	2.6	320	80	5	938	42	15	10	32	1.80
9642738--9642786	21	2.3	21	89	0	71	40	18	10	30	1.84
9647468--9647501	6	5.7	6	100	0	68	0	14	0	85	0.60
9647469--9647520	12	4.3	12	92	0	59	3	21	0	75	0.97
9647469--9647510	18	2.3	18	91	0	66	2	19	0	78	0.86
9648101--9648144	16	3.0	14	79	20	54	81	4	2	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9648101--9648150	15	3.3	15	81	13	57	78	6	4	12	1.08
9654334--9654390	30	1.9	29	85	3	78	64	1	1	31	1.13
9654374--9654437	29	2.2	29	86	2	85	56	0	1	42	1.09
9654782--9654835	14	3.6	16	78	14	53	44	0	1	53	1.11
9655418--9655495	26	2.9	25	83	14	86	46	1	2	50	1.23
9657496--9657689	96	2.0	96	97	0	370	26	19	10	43	1.83
9666284--9666312	2	14.5	2	100	0	58	48	0	0	51	1.00
9666521--9666606	22	3.7	22	76	15	75	69	3	4	22	1.22
9666506--9666560	18	2.9	18	78	10	58	70	1	3	23	1.12
9666520--9666590	26	2.7	26	81	12	76	71	2	4	21	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133