genome.fa.s645.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  103  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20210462--20210494	9	3.7	9	95	0	57	33	0	6	60	1.21
20210744--20210828	10	9.0	9	72	18	50	61	2	2	34	1.22
20210740--20210833	8	10.5	8	72	18	53	57	2	2	38	1.23
20210740--20210783	18	2.6	16	85	7	52	63	2	0	34	1.07
20214182--20214262	16	4.8	16	73	18	58	22	4	6	66	1.33
20214177--20214260	36	2.3	36	80	13	93	23	4	5	65	1.34
20214185--20214241	27	2.1	28	87	9	82	22	7	3	66	1.31
20226319--20226384	19	3.4	18	78	12	69	19	15	24	40	1.90
20226425--20226495	19	3.7	19	76	10	56	22	8	22	46	1.78
20226676--20226721	11	3.8	13	75	18	55	32	0	0	67	0.91
20226672--20226723	13	4.3	13	75	22	51	32	0	0	67	0.91
20226580--20226873	142	2.0	142	94	1	507	34	7	4	53	1.50
20226812--20226863	16	3.0	17	76	15	61	30	0	0	69	0.89
20226968--20226998	3	10.7	3	93	6	55	32	0	0	67	0.91
20228537--20228592	7	8.0	7	77	15	62	0	1	16	82	0.76
20228540--20228585	17	2.8	16	86	3	65	0	2	15	82	0.76
20228623--20228816	36	5.4	36	74	8	164	56	15	13	14	1.68
20228611--20228818	71	2.9	71	81	3	213	55	15	13	14	1.69
20228831--20228912	35	2.4	34	83	4	92	51	19	13	15	1.76
20229081--20229295	33	6.4	32	73	13	139	33	16	13	36	1.87
20229078--20229224	67	2.2	68	80	6	156	31	15	14	37	1.89
20229107--20229331	101	2.2	101	80	7	253	35	16	12	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20230969--20231008	19	2.0	20	95	4	73	50	5	0	45	1.23
20230967--20231012	19	2.6	17	83	16	58	50	4	0	45	1.21
20232123--20232170	16	2.9	16	80	19	62	6	20	0	72	1.05
20232131--20232172	18	2.3	19	95	4	77	4	21	0	73	1.01
20232122--20232178	18	3.3	18	80	7	66	5	17	0	77	0.95
20232877--20232913	13	2.8	13	95	0	65	0	10	0	89	0.49
20232884--20232913	11	2.6	11	94	5	51	0	10	0	90	0.47
20236780--20236830	26	2.0	25	88	3	75	66	3	1	27	1.20
20237994--20238070	19	4.1	19	76	6	84	18	15	25	40	1.90
20238149--20238209	26	2.4	25	86	8	86	18	6	24	50	1.70
20239142--20239191	24	2.1	24	88	0	73	20	8	14	58	1.61
20239535--20239591	26	2.2	26	81	12	64	17	7	5	70	1.29
20239611--20239660	14	3.4	14	76	13	55	18	2	4	76	1.04
20240902--20240965	18	3.6	16	76	19	65	79	0	15	4	0.89
20240904--20240965	13	4.7	12	74	20	52	79	0	16	4	0.90
20242042--20242122	41	2.0	41	90	0	126	22	13	18	45	1.84
20242047--20242195	37	3.8	40	77	11	132	24	11	18	46	1.81
20242439--20242492	16	3.5	15	78	9	56	25	5	1	66	1.23
20243488--20243554	16	4.3	16	74	22	54	13	1	8	76	1.09
20243495--20243562	23	2.8	24	80	10	68	14	2	7	75	1.14
20243495--20243562	24	2.8	24	78	10	68	14	2	7	75	1.14
20245724--20245788	22	2.9	22	77	16	62	12	1	7	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20251272--20251332	32	1.9	32	83	6	79	49	1	11	37	1.49
20251355--20251517	82	2.0	82	93	2	283	36	3	7	52	1.45
20251366--20251498	43	3.2	42	73	16	141	35	3	6	54	1.45
20260807--20260856	21	2.3	21	82	6	55	8	10	2	80	0.99
20261354--20261414	26	2.3	26	85	0	95	14	13	16	55	1.69
20263032--20263097	21	3.1	21	76	6	71	21	3	7	68	1.29
20267640--20267693	7	6.9	7	78	19	54	68	0	18	12	1.21
20267642--20267679	15	2.5	15	95	4	67	68	0	18	13	1.21
20267651--20267733	19	3.8	22	73	22	59	68	0	16	14	1.21
20267974--20268002	10	2.9	10	100	0	58	37	31	0	31	1.58
20268075--20268121	15	3.1	15	74	20	53	21	29	2	46	1.63
20268059--20268126	30	2.3	30	92	0	109	20	26	5	47	1.73
20268364--20268511	79	1.9	79	88	5	228	34	6	22	36	1.81
20269003--20269178	24	7.6	23	72	12	101	37	3	17	40	1.68
20269007--20269159	24	6.4	25	75	9	126	37	3	18	40	1.69
20269007--20269157	73	2.1	69	85	4	194	37	3	18	40	1.69
20269161--20269390	109	2.1	108	85	2	302	36	10	16	36	1.83
20269409--20269480	22	3.1	23	70	6	65	44	8	6	40	1.61
20269655--20269685	16	1.9	16	93	0	53	25	16	16	41	1.88
20269699--20269761	16	3.9	16	77	6	56	46	9	7	36	1.66
20269981--20270138	18	8.7	19	72	14	111	30	17	11	41	1.84
20270127--20270185	19	3.0	19	80	14	66	25	10	11	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20270224--20270303	20	3.9	21	72	6	56	37	8	15	38	1.78
20271052--20271097	4	11.2	4	81	4	56	19	2	4	73	1.10
20271056--20271095	17	2.4	17	91	4	64	17	2	5	75	1.10
20274822--20274896	27	3.0	24	79	12	73	50	2	2	44	1.30
20278595--20278642	25	2.0	24	88	12	71	35	12	25	27	1.92
20279616--20279644	2	14.5	2	100	0	58	51	0	0	48	1.00
20279912--20279969	26	2.3	26	84	3	73	53	8	6	31	1.58
20287866--20287912	24	2.0	24	86	0	67	31	14	17	36	1.90
20291253--20291296	22	2.0	22	100	0	88	45	4	18	31	1.69
20298885--20298928	8	5.6	8	84	15	65	79	9	11	0	0.93
20298885--20298932	15	3.1	15	82	14	62	79	8	12	0	0.94
20299387--20299462	28	2.7	28	76	8	73	34	9	17	39	1.81
20299550--20299593	19	2.3	19	92	0	70	40	11	18	29	1.85
20311493--20311530	20	1.9	20	100	0	76	36	5	26	31	1.79
20313507--20313555	19	2.5	20	77	9	57	22	10	20	46	1.80
20313549--20313590	12	3.6	12	80	6	59	16	2	28	52	1.56
20313552--20313588	11	3.3	11	88	3	56	16	2	27	54	1.56
20316017--20316211	74	2.7	72	81	4	205	54	10	14	20	1.69
20316017--20316211	36	5.4	36	75	7	153	54	10	14	20	1.69
20316017--20316208	72	2.6	71	80	5	197	54	10	14	20	1.70
20316503--20316583	36	2.2	36	82	0	99	55	7	14	22	1.64
20316518--20316590	36	2.0	36	89	0	110	53	10	16	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20316620--20316725	36	2.9	36	72	0	95	50	9	16	22	1.74
20316718--20316817	35	2.8	36	74	8	105	55	11	17	17	1.69
20323441--20323495	15	3.7	14	86	11	74	38	3	0	58	1.16
20323941--20323965	13	1.9	13	100	0	50	16	0	24	60	1.36
20323962--20323997	19	1.9	18	94	5	63	16	13	22	47	1.82
20324273--20324300	10	2.8	10	100	0	56	17	0	0	82	0.68
20327002--20327055	25	2.2	25	89	0	81	22	16	29	31	1.96
20328557--20328643	20	4.7	18	77	14	72	20	1	39	39	1.60
20328586--20328732	20	7.6	20	67	12	83	25	2	31	40	1.69
20328577--20328709	13	9.8	13	68	16	65	24	3	31	40	1.70
20328751--20328839	26	3.5	26	87	3	126	19	3	29	48	1.65
20328835--20328879	18	2.4	20	71	17	51	17	4	31	46	1.68
20328884--20328966	19	4.5	19	74	8	91	16	1	39	42	1.56
20328848--20328965	54	2.2	54	95	0	209	16	1	38	42	1.59
20328845--20328929	18	4.7	18	69	5	55	16	1	38	43	1.56
20328884--20328977	36	2.6	37	77	6	102	15	2	39	42	1.59
20331349--20331418	22	3.2	22	77	0	77	32	12	18	35	1.89
20331414--20331465	22	2.4	22	83	0	59	40	7	15	36	1.76
20331428--20331490	22	2.9	22	85	0	90	36	9	15	38	1.81
20331431--20331581	44	3.4	43	76	1	149	36	12	15	35	1.86
20331389--20331580	88	2.2	88	84	3	244	36	12	16	34	1.87
20331474--20331581	22	4.9	22	74	0	99	37	12	15	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20331755--20331978	41	5.5	41	72	10	129	36	10	15	37	1.83
20331667--20331971	81	3.8	82	74	9	200	36	11	15	37	1.83
20331823--20332002	41	4.4	39	73	8	153	34	12	17	36	1.87
20332048--20332095	21	2.2	22	85	7	62	25	18	2	54	1.55
20332718--20332762	20	2.2	20	84	8	54	46	20	0	33	1.51
20332800--20332837	10	3.8	10	83	13	51	23	10	13	52	1.71
20333409--20333468	30	2.0	30	96	0	111	36	1	10	51	1.45
20334288--20334336	11	4.7	10	78	9	53	57	0	2	40	1.10
20334282--20334336	21	2.6	21	83	8	76	56	0	1	41	1.10
20335618--20335654	15	2.4	16	82	13	51	21	0	2	75	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133