genome.fa.s645.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  92  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18057565--18057696	12	12.1	10	80	8	77	34	3	3	59	1.28
18057565--18057696	18	8.1	16	78	8	108	34	3	3	59	1.28
18057638--18057730	3	31.3	3	86	2	125	31	4	2	62	1.26
18058600--18058652	13	3.8	13	79	20	63	26	1	0	71	0.96
18058600--18058665	28	2.3	29	82	14	93	24	1	0	74	0.91
18058727--18058759	13	2.5	13	95	0	57	81	0	3	15	0.80
18059938--18060086	60	2.4	60	81	10	160	53	3	2	40	1.31
18060007--18060318	10	31.6	10	64	20	72	52	2	2	41	1.31
18059986--18060345	30	12.1	29	71	13	198	52	2	2	41	1.30
18059986--18060133	58	2.5	58	81	10	151	52	2	2	42	1.27
18060083--18060118	17	2.1	17	89	0	54	47	0	2	50	1.15
18060204--18060260	5	11.4	5	83	12	73	56	1	0	42	1.10
18060204--18060255	14	3.6	14	82	17	70	55	0	0	44	0.99
18060712--18060753	11	3.8	11	81	9	50	42	2	0	54	1.13
18060829--18060903	21	3.7	21	72	15	59	42	5	1	50	1.33
18060848--18060932	40	2.1	42	82	8	104	38	4	3	52	1.39
18060848--18061071	21	10.7	20	68	17	91	41	3	2	52	1.33
18060939--18061071	10	12.5	10	69	16	63	42	2	2	52	1.26
18062152--18062218	28	2.4	27	74	13	66	50	1	2	44	1.26
18062812--18062861	18	2.8	18	84	0	64	82	2	2	14	0.86
18062814--18062861	19	2.5	19	86	3	60	85	2	2	10	0.77
18065198--18065448	124	2.0	126	92	1	425	45	15	10	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18070222--18070285	10	6.4	9	78	18	65	64	6	0	29	1.18
18070222--18070285	20	3.2	20	86	4	85	64	6	0	29	1.18
18070737--18071027	10	28.6	10	69	13	130	33	2	5	58	1.34
18070747--18070886	29	4.7	29	75	16	115	35	2	5	57	1.35
18070842--18070896	19	2.8	19	73	15	58	29	0	5	65	1.15
18070970--18071034	10	5.8	12	75	17	52	30	4	1	63	1.24
18071684--18071715	15	2.1	15	94	0	55	56	3	0	40	1.15
18072158--18072199	19	2.2	19	83	12	50	42	2	4	50	1.36
18072307--18072340	13	2.6	13	86	13	52	52	0	0	47	1.00
18074609--18074638	16	1.9	16	93	6	53	26	0	3	70	1.03
18075285--18075318	16	2.1	16	100	0	68	50	8	17	23	1.74
18076032--18076122	26	3.5	26	76	16	91	53	1	1	43	1.15
18076035--18076156	34	3.6	34	75	12	110	55	0	0	42	1.11
18076068--18076109	18	2.6	16	79	17	50	52	2	0	45	1.13
18076208--18076313	15	6.7	16	66	21	55	45	1	0	51	1.18
18076249--18076319	25	2.8	24	77	12	70	47	1	0	50	1.09
18079426--18079510	29	3.0	29	77	10	95	41	16	14	28	1.87
18079434--18079520	26	3.2	26	83	4	102	40	18	16	25	1.90
18079497--18079699	105	1.9	105	87	0	298	36	14	15	32	1.89
18079501--18079733	105	2.2	106	83	1	281	39	15	14	31	1.87
18080126--18080167	22	1.9	22	90	0	66	33	23	19	23	1.97
18080244--18080338	22	4.3	22	81	2	100	28	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18079979--18080338	192	1.9	192	80	3	420	33	15	16	35	1.90
18080439--18080487	22	2.2	23	82	10	66	36	32	6	24	1.80
18080781--18080823	16	2.7	16	81	0	50	83	6	4	4	0.89
18083228--18083267	21	1.9	21	89	0	62	52	25	0	22	1.47
18083228--18083273	21	2.2	21	84	0	56	54	26	0	19	1.44
18083248--18083302	15	3.8	15	75	18	62	52	25	0	21	1.47
18083332--18083381	18	2.8	17	82	11	55	48	32	2	18	1.59
18088580--18088665	41	2.2	40	81	8	95	32	15	13	38	1.87
18088662--18088801	41	3.4	41	81	6	169	30	15	12	41	1.84
18088662--18088835	41	4.2	41	77	10	151	30	14	13	41	1.84
18088854--18088947	42	2.2	43	80	3	109	32	15	13	37	1.88
18089429--18089482	18	2.9	18	88	2	81	72	12	0	14	1.13
18090908--18090955	17	2.8	17	87	0	60	33	2	18	45	1.61
18090926--18090960	17	2.0	17	94	5	61	28	2	22	45	1.67
18091311--18091354	22	2.0	23	86	4	63	47	11	0	40	1.39
18092907--18092979	34	2.2	33	82	4	92	43	10	24	20	1.84
18092835--18093006	87	2.0	87	84	2	229	49	11	18	20	1.78
18092914--18093405	105	4.7	105	90	1	727	47	10	19	23	1.80
18093230--18093544	139	2.3	139	93	1	524	47	10	19	22	1.79
18093125--18093650	244	2.2	244	90	1	820	47	10	19	22	1.80
18093369--18094069	105	6.7	105	88	2	971	47	11	18	22	1.81
18093366--18094069	316	2.2	313	91	2	1133	47	11	18	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18093230--18093965	139	5.3	137	75	10	495	47	11	19	22	1.81
18095212--18095279	10	7.4	10	73	20	60	10	8	1	79	1.00
18095211--18095242	16	2.0	16	100	0	64	12	6	0	81	0.87
18095209--18095241	8	4.1	8	92	0	57	12	9	0	78	0.95
18095212--18095279	28	2.5	27	79	13	86	10	8	1	79	1.00
18106603--18106650	17	2.8	17	87	0	60	33	2	18	45	1.61
18106621--18106655	17	2.0	17	94	5	61	28	2	22	45	1.67
18106957--18107002	23	2.0	24	91	4	76	26	0	2	71	0.97
18107005--18107048	22	2.0	23	86	4	63	47	11	0	40	1.39
18108151--18108187	3	12.7	3	88	5	58	32	0	2	64	1.07
18109629--18109660	14	2.3	14	100	0	64	40	15	0	43	1.47
18112900--18112943	21	2.0	23	86	8	65	29	0	2	68	1.02
18116749--18116783	13	2.7	13	90	0	52	20	2	0	77	0.90
18116763--18116814	27	1.9	27	88	0	77	38	0	0	61	0.96
18117751--18117778	2	14.0	2	100	0	56	50	0	0	50	1.00
18117929--18117976	21	2.2	22	81	7	53	35	12	2	50	1.52
18118165--18118204	20	2.0	21	95	5	73	57	0	0	42	0.98
18118187--18118283	17	5.6	16	71	19	63	52	0	2	45	1.12
18118165--18118283	52	2.2	55	76	20	135	54	0	1	43	1.10
18118176--18118236	9	7.0	9	75	14	65	54	0	1	44	1.10
18118164--18118299	19	7.6	17	75	22	97	54	0	1	43	1.14
18118361--18118433	23	3.2	24	80	7	71	43	4	1	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18120550--18120586	20	2.0	20	89	10	60	48	0	0	51	1.00
18124997--18125138	3	48.0	3	83	5	137	65	5	2	26	1.28
18125137--18125174	3	12.7	3	100	0	76	34	0	0	65	0.93
18135253--18135299	25	1.9	25	86	4	69	34	10	10	44	1.74
18135279--18135606	50	6.5	51	78	6	301	29	14	11	44	1.80
18135279--18135606	101	3.2	100	79	6	302	29	14	11	44	1.80
18135279--18135606	152	2.2	152	80	7	362	29	14	11	44	1.80
18138148--18138199	19	2.7	19	82	11	70	46	34	5	13	1.67
18138149--18138209	19	3.2	18	77	11	59	44	34	6	14	1.72
18138243--18138342	19	5.2	18	75	16	85	47	37	2	14	1.55
18138255--18138367	12	9.0	12	76	16	88	46	39	1	12	1.52
18138254--18138342	7	13.6	7	72	19	68	46	38	2	13	1.56
18138254--18138355	26	4.0	26	73	17	88	46	38	1	13	1.55
18140892--18140943	24	2.3	23	74	9	54	42	3	9	44	1.55
18140919--18141020	27	3.9	25	75	15	66	39	4	7	48	1.54
18141076--18141114	3	13.3	3	89	5	62	30	0	2	66	1.05
18141074--18141110	17	2.2	17	95	0	65	32	0	2	64	1.07
18141076--18141113	20	1.9	20	94	0	67	31	0	2	65	1.06
18141620--18141648	12	2.4	12	100	0	58	37	6	10	44	1.65
18142258--18142291	18	1.9	17	88	5	50	76	2	5	14	1.09
18144864--18144908	17	2.6	17	80	13	56	68	6	6	17	1.33
18145218--18145297	40	2.0	40	97	0	151	30	6	22	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18148937--18148980	22	2.0	22	86	0	61	63	6	6	22	1.43
18149290--18149327	19	2.0	19	89	0	58	44	18	13	23	1.85
18149367--18149438	29	2.5	30	80	8	87	69	4	2	23	1.19
18150877--18150934	3	19.7	3	89	3	91	67	3	0	29	1.07
18151081--18151118	20	2.0	20	89	5	60	73	0	0	26	0.83
18165006--18165044	16	2.5	15	80	12	51	5	12	2	79	1.00
18165039--18165080	11	3.9	11	78	6	50	40	0	0	59	0.97
18165044--18165082	21	1.9	21	89	5	62	43	0	0	56	0.99
18165359--18165411	27	2.0	27	81	7	63	58	5	3	32	1.39
18172693--18172727	18	1.9	18	88	11	54	71	14	11	2	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133