genome.fa.s645.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  76  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15008617--15008646	12	2.5	12	88	0	51	20	0	10	70	1.16
15008678--15008717	20	2.0	21	85	14	57	80	0	12	7	0.91
15009282--15009329	17	2.8	17	81	9	62	31	8	8	52	1.61
15009286--15009342	17	3.4	16	78	7	60	31	7	8	52	1.59
15009321--15009387	21	3.2	20	81	6	80	31	2	10	55	1.49
15009312--15009472	24	7.0	24	76	15	162	32	3	9	54	1.51
15009269--15009618	20	16.7	20	68	21	125	30	6	10	52	1.60
15009331--15009493	47	3.6	45	77	13	156	31	3	9	54	1.51
15009520--15009618	41	2.4	40	84	1	126	28	8	11	52	1.65
15009456--15009540	32	2.7	32	92	1	145	27	4	10	57	1.52
15009700--15009738	19	2.1	19	85	0	51	28	5	15	51	1.64
15009713--15009768	24	2.3	23	85	14	78	32	3	12	51	1.56
15009914--15009979	16	3.8	17	73	13	55	36	6	9	48	1.60
15009921--15009963	18	2.5	17	81	7	52	37	6	9	46	1.63
15009931--15009997	18	3.7	18	75	15	59	37	7	7	47	1.60
15010054--15010107	28	2.1	24	86	13	72	27	3	18	50	1.64
15010622--15010688	32	2.1	32	88	0	98	32	14	16	35	1.90
15010634--15010888	33	7.9	34	74	9	151	38	18	12	29	1.88
15010651--15010886	66	3.6	66	80	4	264	40	18	11	29	1.86
15011651--15011685	7	5.0	7	92	0	52	80	5	0	14	0.89
15011651--15011703	14	3.8	14	78	14	56	79	9	0	11	0.94
15011651--15011704	21	2.6	21	82	11	67	79	9	0	11	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15012036--15012081	18	2.6	18	80	13	58	71	0	0	28	0.86
15012048--15012077	15	2.1	14	93	6	51	70	0	0	30	0.88
15014192--15014292	44	2.3	43	81	9	109	64	0	7	27	1.21
15014417--15014481	20	3.2	20	69	16	53	50	21	4	23	1.67
15014469--15014535	27	2.5	27	73	11	66	46	22	10	20	1.81
15014495--15014533	20	2.0	20	85	10	53	43	20	10	25	1.83
15014543--15014603	20	3.2	19	82	13	81	42	16	16	24	1.88
15042878--15042903	13	2.0	13	100	0	52	38	7	23	30	1.83
15048814--15048876	30	2.1	30	93	0	108	41	7	26	23	1.82
15049467--15049623	52	3.0	51	82	3	188	26	24	8	40	1.83
15049648--15049689	11	3.8	11	93	0	75	50	28	0	21	1.49
15049648--15049690	22	2.0	22	100	0	86	48	27	0	23	1.51
15050557--15050713	52	3.0	51	82	3	188	26	25	7	40	1.82
15050740--15050769	11	2.7	11	94	0	51	46	26	0	26	1.53
15052460--15052485	13	2.0	13	100	0	52	30	23	0	46	1.53
15055082--15055116	14	2.5	14	90	0	52	14	48	22	14	1.79
15057802--15058129	164	2.0	164	92	2	543	33	21	23	21	1.98
15074451--15074556	56	1.9	55	86	1	149	59	6	10	23	1.54
15079107--15079139	16	2.1	16	88	5	50	24	42	6	27	1.78
15080659--15080772	7	13.7	9	77	16	72	76	0	13	10	1.02
15080671--15080748	11	6.4	11	78	16	50	79	0	11	8	0.93
15080706--15080765	31	1.9	31	90	6	95	78	0	8	13	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15082136--15082231	44	2.2	43	87	5	131	25	15	17	41	1.89
15082240--15082510	44	6.2	44	78	6	246	25	12	16	45	1.83
15082233--15082517	132	2.2	131	83	3	349	25	12	16	45	1.82
15084977--15085031	27	2.0	27	82	6	67	70	0	12	16	1.16
15085616--15085953	99	3.4	97	79	6	290	30	10	13	45	1.77
15085619--15085953	49	6.8	48	80	7	262	30	10	13	45	1.77
15085639--15085953	97	3.2	95	79	7	292	30	10	13	45	1.77
15086293--15087061	384	2.0	384	99	0	1520	34	13	14	37	1.85
15088764--15089082	7	48.4	7	68	15	130	44	35	0	18	1.57
15088758--15088917	20	7.8	19	66	22	67	44	32	0	22	1.58
15088764--15088881	46	2.5	46	76	11	123	44	32	0	22	1.53
15088782--15088938	59	2.6	57	82	7	163	44	33	0	21	1.57
15088764--15089082	13	24.8	13	67	17	134	44	35	0	18	1.57
15097017--15097104	31	2.8	32	78	14	85	10	19	0	70	1.15
15115574--15115599	13	2.0	13	100	0	52	61	0	0	38	0.96
15115707--15115758	26	2.0	26	81	3	61	75	3	5	15	1.14
15116725--15116773	21	2.3	21	92	0	80	53	10	22	14	1.71
15117884--15117964	40	2.0	41	85	2	110	37	6	22	34	1.79
15120954--15121019	15	4.3	15	74	16	55	69	1	27	1	1.06
15124664--15125165	250	2.0	250	98	0	959	38	10	8	42	1.70
15127143--15127206	5	13.2	5	90	3	69	79	7	0	12	0.92
15127502--15127572	22	3.3	20	77	9	63	40	12	9	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15127749--15127817	18	3.8	18	78	1	75	52	14	13	20	1.74
15127904--15127954	19	2.6	19	84	3	66	43	13	15	27	1.85
15128249--15128291	22	2.0	21	86	4	59	60	11	2	25	1.43
15131551--15131618	17	3.8	17	75	9	64	8	20	0	70	1.13
15131575--15131623	17	2.6	20	81	15	68	10	24	0	65	1.23
15131899--15131936	19	2.0	19	90	10	60	13	18	0	68	1.21
15136502--15136557	22	2.7	21	86	5	69	5	12	5	76	1.12
15138490--15138523	17	1.9	18	94	5	61	52	23	14	8	1.69
15141063--15141114	11	5.0	11	78	21	51	32	0	1	65	1.04
15141079--15141133	23	2.6	21	82	8	58	40	3	1	54	1.28
15141967--15142015	22	2.2	22	82	7	55	28	0	0	71	0.86
15142050--15142093	19	2.3	19	80	11	54	65	2	0	31	1.05
15142546--15142592	18	2.6	18	76	6	51	34	0	2	63	1.06
15143248--15143277	2	15.0	2	100	0	60	50	0	0	50	1.00
15148319--15148390	27	2.8	25	72	13	58	26	8	18	47	1.76
15150344--15150386	18	2.4	18	84	7	52	27	6	13	51	1.67
15152610--15152658	23	2.1	23	96	0	89	34	14	14	36	1.86
15159260--15159303	25	1.9	23	82	17	56	29	6	15	47	1.72
15166409--15166452	22	2.0	22	95	0	79	43	13	11	31	1.80
15170101--15170161	24	2.6	24	92	2	97	37	19	29	13	1.90
15170308--15170351	22	2.0	22	95	0	79	43	13	11	31	1.80
15178558--15178765	104	2.0	104	99	0	407	37	21	12	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15184544--15184573	7	4.4	7	95	4	53	10	16	0	73	1.09
15184534--15184573	14	3.0	13	86	13	55	10	15	0	75	1.05
15184540--15184620	36	2.2	36	77	10	85	4	25	0	69	1.09
15184638--15184698	17	3.6	17	81	14	81	1	16	0	81	0.76
15186365--15186394	3	10.0	3	100	0	60	66	0	0	33	0.92
15186393--15186435	3	14.0	3	95	4	77	34	0	0	65	0.93
15186438--15186481	15	2.9	15	83	13	54	77	0	4	18	0.94
15186436--15186493	22	2.6	22	81	8	64	75	0	5	18	0.98
15189891--15190370	143	3.4	141	76	7	414	41	12	12	33	1.80
15190553--15190590	10	3.8	10	80	13	51	28	18	15	36	1.92
15196216--15196257	21	2.0	21	86	9	59	69	2	9	19	1.28
15197533--15197570	18	2.1	18	85	9	51	76	0	18	5	0.97
15210977--15211238	139	1.9	139	80	6	307	34	10	3	52	1.51
15214487--15214525	20	2.0	20	84	0	51	61	12	5	20	1.50
15214828--15215286	232	2.0	229	84	5	595	43	16	7	32	1.77
15215496--15215620	42	2.9	43	72	10	112	44	12	10	32	1.76
15216010--15216167	55	2.9	55	76	2	147	28	17	12	41	1.86
15216204--15216351	55	2.7	55	81	1	179	28	9	14	47	1.76
15216628--15216657	15	2.0	15	100	0	60	60	13	6	20	1.55
15216630--15216664	15	2.3	15	90	0	52	68	11	2	17	1.31
15220395--15220527	62	2.2	61	82	4	151	34	14	15	36	1.87
15220444--15220560	62	1.9	63	82	7	150	34	14	15	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15220702--15220816	59	1.9	59	87	0	167	27	18	12	41	1.86
15222950--15223001	27	1.9	27	84	0	68	11	21	1	65	1.34
15226756--15226811	27	2.1	27	96	0	103	48	21	10	19	1.79
15232604--15233015	145	2.9	142	82	4	459	33	14	13	38	1.85
15238711--15238764	4	13.5	4	84	0	72	24	27	0	48	1.52
15238711--15238764	16	3.4	16	89	0	81	24	27	0	48	1.52
15243268--15243347	22	3.6	22	80	12	92	37	22	17	22	1.94
15243657--15243856	67	3.0	67	86	2	294	38	20	14	28	1.91
15243657--15243815	34	4.7	34	66	14	89	37	20	13	28	1.91
15243674--15243865	34	5.7	34	73	7	169	38	19	14	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133