genome.fa.s645.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  59  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12205357--12205401	18	2.7	16	83	16	56	51	2	4	42	1.34
12206267--12206327	32	1.9	32	86	0	86	40	19	13	26	1.88
12208073--12208117	15	3.2	15	78	15	60	17	0	4	77	0.92
12208069--12208113	20	2.2	20	92	7	74	17	0	2	80	0.82
12208071--12208135	27	2.3	29	84	10	91	20	1	4	73	1.08
12208124--12208268	4	36.8	4	71	15	56	29	3	2	64	1.21
12208124--12208226	42	2.4	42	81	10	104	30	1	1	66	1.14
12208210--12208263	26	2.1	25	89	3	81	27	3	1	66	1.19
12208172--12208307	67	2.1	63	81	14	152	27	4	2	64	1.27
12208080--12208344	20	13.0	20	67	14	82	26	4	4	64	1.29
12208623--12208653	11	2.8	11	90	0	53	25	6	12	54	1.62
12208855--12208901	14	3.3	14	77	16	51	46	0	53	0	1.00
12209147--12209176	3	9.7	3	92	7	51	30	0	0	70	0.88
12209141--12209190	16	2.9	17	77	20	50	32	0	4	64	1.12
12209147--12209190	22	2.0	22	86	8	63	31	0	4	63	1.14
12209205--12209271	5	13.0	5	84	12	91	20	0	1	77	0.85
12209288--12209505	58	3.7	59	80	10	277	42	7	13	36	1.73
12212798--12212917	63	1.9	63	82	5	152	41	9	13	35	1.76
12213207--12213600	198	2.0	199	84	4	517	37	15	14	32	1.88
12213786--12214010	119	1.9	120	80	8	262	38	13	15	32	1.86
12221893--12221953	13	4.8	13	73	15	56	73	0	1	24	0.92
12221888--12221951	18	3.5	17	79	10	65	73	0	1	25	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12223929--12223968	17	2.4	17	87	4	55	62	0	0	37	0.95
12224128--12224209	19	4.3	19	74	9	60	42	26	10	19	1.84
12224136--12224173	20	1.9	20	88	0	58	44	28	10	15	1.80
12227558--12227588	3	10.3	3	100	0	62	64	0	0	35	0.94
12228333--12228380	11	4.5	11	81	5	53	85	0	14	0	0.60
12228344--12228380	15	2.5	15	87	12	58	86	0	13	0	0.57
12229084--12229125	17	2.5	17	88	3	59	76	0	21	2	0.90
12229596--12229650	19	2.9	19	82	12	78	74	0	20	5	1.01
12229613--12229690	13	6.6	11	74	21	54	76	3	16	2	1.04
12229604--12229689	8	10.2	8	69	18	59	76	3	17	2	1.03
12231057--12231180	32	3.9	32	78	7	90	38	16	15	29	1.90
12231057--12231123	32	2.1	33	85	2	91	37	13	19	29	1.90
12231071--12231188	32	3.7	31	78	11	98	37	17	14	30	1.90
12231100--12231191	31	2.9	32	76	12	82	38	19	13	29	1.89
12231246--12231435	40	4.8	40	73	8	138	41	14	10	34	1.80
12231449--12231584	41	3.3	40	68	15	98	34	13	11	40	1.81
12232335--12232389	15	3.4	15	78	14	56	78	0	1	20	0.85
12234468--12234504	19	1.9	19	89	10	58	64	0	24	10	1.25
12234468--12234505	10	4.0	10	86	6	53	63	0	26	10	1.27
12235132--12235174	20	2.2	20	100	0	86	48	23	4	23	1.69
12235142--12235248	19	5.5	20	72	10	78	40	27	11	21	1.87
12240300--12240352	23	2.2	24	80	16	65	58	5	5	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12240309--12240344	18	2.0	18	88	0	54	63	5	2	27	1.30
12245583--12245613	13	2.4	13	94	0	53	0	22	3	74	0.96
12248992--12249017	9	2.9	9	100	0	52	46	11	23	19	1.82
12252970--12253010	18	2.3	18	86	0	55	58	0	26	14	1.37
12252980--12253013	12	2.8	12	86	0	50	55	0	23	20	1.43
12253191--12253252	26	2.5	24	82	10	72	30	4	14	50	1.64
12256133--12256328	88	2.2	89	94	0	340	16	12	5	65	1.44
12258692--12258738	15	2.9	16	81	9	51	61	10	0	27	1.29
12258838--12258885	25	1.9	25	95	0	87	35	31	8	25	1.85
12260249--12260677	213	2.0	214	94	1	745	29	14	13	41	1.85
12261235--12261298	29	2.2	29	83	5	76	15	10	9	64	1.50
12262936--12262974	20	2.0	20	89	0	60	28	17	17	35	1.94
12275753--12275952	100	2.0	100	97	0	373	26	22	18	33	1.96
12276868--12276907	16	2.5	16	87	0	53	42	22	2	32	1.67
12279368--12279401	10	3.4	10	92	8	52	50	2	0	47	1.16
12289257--12289291	16	2.2	16	94	0	61	60	20	2	17	1.49
12289475--12289499	8	3.1	8	100	0	50	52	12	12	24	1.72
12291125--12291214	23	4.1	22	70	18	71	37	3	12	46	1.58
12291197--12291221	13	1.9	13	100	0	50	36	0	8	56	1.29
12293555--12293617	18	3.1	21	75	15	69	7	23	0	68	1.16
12293554--12293625	21	3.5	20	76	16	58	9	22	0	68	1.19
12293564--12293622	20	3.0	19	72	16	57	10	20	0	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12297183--12297216	16	2.1	16	89	10	52	79	5	0	14	0.91
12297155--12297211	19	2.9	19	82	7	62	80	5	1	12	0.95
12300559--12300594	12	3.0	12	91	0	54	19	27	11	41	1.85
12303076--12303105	2	15.0	2	100	0	60	50	0	0	50	1.00
12304336--12304370	15	2.2	16	90	5	54	25	0	17	57	1.40
12308406--12308452	17	2.7	18	90	6	78	72	4	10	12	1.25
12308905--12308954	21	2.4	20	87	9	73	8	2	28	62	1.35
12309356--12309428	6	11.7	6	71	23	53	19	4	1	75	1.04
12309346--12309426	26	3.2	26	77	15	80	16	3	2	77	1.01
12309695--12309724	14	2.1	14	100	0	60	60	0	0	40	0.97
12314659--12314902	44	5.5	44	72	13	135	39	10	14	35	1.80
12315135--12315219	16	5.1	16	73	8	62	36	14	10	38	1.80
12315135--12315194	17	3.5	17	81	6	68	31	16	11	40	1.85
12315238--12315294	18	3.2	18	79	0	69	35	10	7	47	1.65
12315279--12315348	18	4.0	18	72	5	54	45	18	5	30	1.72
12315444--12315487	18	2.4	18	84	0	61	36	13	13	36	1.85
12316215--12316261	24	2.0	22	84	8	58	12	0	21	65	1.25
12316970--12317011	16	2.7	16	88	3	59	28	4	14	52	1.62
12316986--12317058	37	2.1	36	87	10	107	31	5	13	49	1.65
12317041--12317112	32	2.2	32	82	4	83	25	8	2	63	1.36
12317056--12317120	32	2.0	32	96	0	121	21	12	0	66	1.24
12319433--12319541	56	1.9	57	83	9	143	42	10	12	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12319655--12319869	54	4.1	52	78	6	171	44	7	9	38	1.67
12319714--12319875	52	3.1	52	84	5	209	45	8	8	37	1.66
12319713--12319873	53	3.0	53	84	5	200	45	8	8	37	1.65
12334350--12334377	12	2.3	12	100	0	56	42	28	10	17	1.83
12337403--12337583	53	3.3	55	78	6	197	33	10	7	48	1.66
12337506--12337629	55	2.2	56	80	5	128	33	13	7	45	1.71
12337403--12337629	109	2.1	110	80	4	253	33	11	7	46	1.69
12338473--12338510	15	2.5	15	87	8	51	78	2	0	18	0.86
12338474--12338525	19	2.7	19	80	16	54	75	3	0	21	0.97
12338474--12338524	23	2.1	25	85	7	70	74	3	0	21	0.98
12339992--12340040	25	1.9	25	83	4	62	57	8	2	32	1.40
12340021--12340098	24	3.2	23	75	13	77	62	10	2	24	1.39
12340004--12340079	25	3.0	26	81	9	86	61	9	1	27	1.34
12340021--12340082	12	5.2	11	74	16	52	64	9	1	24	1.33
12340075--12340118	20	2.3	19	84	7	61	59	13	4	22	1.53
12340052--12340134	44	1.9	43	92	2	139	61	13	3	21	1.47
12340037--12340132	24	4.1	24	80	11	110	62	12	3	21	1.43
12340037--12340182	71	2.1	69	84	5	186	59	12	3	24	1.48
12340137--12340192	19	2.9	19	73	19	53	53	12	3	30	1.55
12340261--12340345	25	3.4	26	76	13	81	54	8	4	32	1.51
12340272--12340332	26	2.2	29	83	13	76	55	4	3	36	1.38
12340472--12340505	7	4.7	7	88	3	50	79	0	5	14	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12340483--12340524	19	2.2	19	83	8	50	78	2	7	11	1.04
12341640--12341671	16	2.0	16	93	0	55	43	28	6	21	1.77
12349457--12349498	2	21.0	2	100	0	84	0	50	0	50	1.00
12357319--12357364	2	23.0	2	95	0	83	47	0	0	52	1.00
12360109--12360422	160	2.0	161	84	5	422	43	16	10	29	1.81
12365188--12365227	21	1.9	21	94	0	71	30	22	5	42	1.75
12367286--12367449	83	2.0	82	92	1	274	41	8	15	34	1.78
12367587--12367910	61	5.2	61	72	15	157	34	16	10	38	1.83
12368402--12368443	13	3.3	13	83	6	59	19	2	30	47	1.62
12368394--12368443	25	2.0	25	92	0	82	16	4	32	48	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133