genome.fa.s645.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  55  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11334379--11334496	23	5.2	22	71	10	76	51	25	0	22	1.53
11334395--11334527	8	17.4	8	68	10	64	49	27	1	21	1.58
11334288--11334511	15	14.7	15	66	18	63	49	28	1	20	1.59
11334439--11334513	37	2.0	38	84	5	98	49	30	0	20	1.49
11336990--11337038	21	2.3	21	76	13	55	46	2	2	48	1.25
11340469--11340541	12	5.8	12	76	12	67	36	0	0	63	0.95
11340471--11340516	21	2.1	22	84	11	60	30	0	0	69	0.89
11340507--11340543	8	4.6	8	86	0	56	43	0	0	56	0.99
11340507--11340561	16	3.6	16	80	11	62	47	0	0	52	1.00
11340916--11340962	10	4.7	10	82	10	60	36	0	0	63	0.94
11340979--11341036	22	2.7	21	82	10	73	51	0	0	48	1.00
11346998--11347026	13	2.2	13	100	0	58	51	20	13	13	1.75
11349861--11349894	17	2.1	16	88	5	50	88	5	5	0	0.64
11351083--11351121	20	2.0	19	85	5	51	48	7	2	41	1.45
11351251--11351320	35	2.0	35	86	5	97	25	2	5	65	1.28
11351251--11351314	20	3.5	18	74	20	53	26	3	6	64	1.33
11353772--11353805	14	2.4	14	86	13	52	50	8	5	35	1.58
11353817--11353852	16	2.3	16	90	4	56	55	11	5	27	1.57
11353878--11353941	20	3.2	20	82	8	69	46	14	1	37	1.53
11353914--11353955	20	2.1	20	86	0	57	47	11	2	38	1.53
11353963--11354046	30	2.8	30	82	8	93	51	13	4	30	1.61
11354181--11354209	15	1.9	15	100	0	58	62	13	6	17	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11354295--11354338	14	3.2	14	84	15	56	72	6	2	18	1.17
11359851--11360062	113	1.9	113	80	3	248	54	9	15	21	1.69
11361014--11361150	36	3.7	38	79	4	127	13	10	19	56	1.66
11361159--11361274	35	3.3	34	77	6	108	19	13	12	53	1.72
11361318--11361352	11	3.2	11	91	0	52	88	2	8	0	0.61
11366691--11366734	19	2.2	20	84	4	63	20	9	18	52	1.72
11368502--11368545	3	15.7	3	86	13	67	29	0	0	70	0.88
11369963--11370179	112	1.9	110	91	5	355	51	14	6	27	1.67
11369963--11370179	115	1.9	112	92	2	362	51	14	6	27	1.67
11372484--11372524	13	3.3	12	87	12	57	7	0	12	80	0.90
11372491--11372553	23	2.8	23	82	2	74	6	3	15	74	1.15
11372618--11372894	46	6.0	46	77	6	167	45	12	9	32	1.75
11372661--11372894	92	2.5	93	78	6	228	44	13	10	31	1.77
11372760--11372900	47	3.1	44	79	13	169	48	14	9	27	1.75
11372889--11373105	49	4.4	50	77	5	226	36	15	11	35	1.84
11380824--11381031	70	3.0	70	85	0	272	36	18	8	36	1.82
11387766--11387807	21	2.0	21	86	4	59	7	19	11	61	1.52
11388752--11388781	15	1.9	16	93	6	53	86	0	6	6	0.70
11392225--11392272	23	2.2	22	85	14	64	37	4	16	41	1.68
11392554--11392589	12	2.9	12	91	4	54	27	13	22	36	1.92
11392990--11393021	2	16.0	2	100	0	64	50	0	0	50	1.00
11394597--11394633	19	2.0	19	89	5	58	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11403927--11404072	72	2.0	72	84	2	186	33	13	13	39	1.84
11410363--11410483	63	1.9	63	83	3	154	41	11	9	38	1.73
11411264--11411298	18	1.9	18	94	0	61	5	8	2	82	0.91
11421696--11421776	25	3.2	25	78	5	65	18	27	17	37	1.93
11425821--11425854	9	3.6	9	85	14	50	64	0	0	35	0.94
11444326--11444353	14	2.0	14	100	0	56	92	0	0	7	0.37
11444329--11444354	13	2.0	13	100	0	52	92	0	0	7	0.39
11446049--11446094	15	3.0	15	81	15	58	2	21	0	76	0.90
11447063--11447117	28	2.0	27	93	6	94	25	14	10	49	1.76
11453415--11453450	17	2.1	17	94	0	63	75	0	13	11	1.06
11453420--11453452	9	3.8	9	84	8	50	78	0	12	9	0.95
11454619--11454720	21	4.7	21	76	7	78	38	1	13	46	1.55
11454701--11454761	14	4.4	14	85	4	70	32	3	19	44	1.67
11455090--11455160	21	3.2	21	67	21	56	40	12	14	32	1.83
11455348--11455415	18	3.8	18	84	0	73	38	8	16	36	1.80
11455342--11455415	36	2.0	37	81	2	87	37	9	14	37	1.79
11455709--11455744	9	4.1	9	89	7	56	19	0	2	77	0.88
11458340--11458425	29	2.9	29	79	8	95	54	8	3	33	1.47
11458353--11458615	9	27.4	9	71	15	102	55	6	1	35	1.38
11458328--11458725	10	40.2	10	67	11	81	54	5	2	36	1.39
11458476--11458589	29	3.9	29	75	4	95	51	6	2	39	1.41
11458511--11458617	19	5.6	19	76	6	99	55	6	1	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11458515--11458623	29	3.9	27	70	19	64	59	6	1	32	1.33
11459123--11459277	35	4.6	35	71	11	108	30	15	16	36	1.90
11459200--11459261	31	2.0	32	83	3	81	29	14	19	37	1.91
11459108--11459562	33	13.6	34	68	13	151	30	16	16	36	1.91
11459779--11459928	65	2.3	68	75	6	155	32	12	16	39	1.86
11460825--11460872	20	2.4	19	80	16	53	8	20	0	70	1.12
11460801--11460899	41	2.3	44	78	15	109	6	20	3	70	1.22
11464656--11464688	15	2.1	16	88	5	50	6	21	3	69	1.24
11467905--11467962	13	4.5	13	76	8	64	13	8	27	50	1.71
11467896--11467949	26	2.1	26	86	3	74	11	11	25	51	1.70
11467907--11468001	26	3.7	26	75	1	102	17	9	22	50	1.75
11468169--11468222	28	2.0	27	85	3	72	29	1	1	66	1.12
11470148--11470214	19	3.3	20	80	17	68	29	2	0	67	1.06
11470148--11470215	22	3.3	20	79	20	63	29	2	0	67	1.05
11487165--11487229	34	1.9	34	93	0	112	27	10	21	40	1.87
11495789--11496140	61	5.9	59	81	11	355	35	10	6	47	1.63
11496175--11496226	19	2.5	21	87	9	72	63	1	0	34	1.06
11496359--11496431	31	2.3	31	90	2	110	20	15	35	28	1.93
11496859--11496901	22	2.0	22	85	0	59	4	11	18	65	1.42
11497272--11497733	42	11.1	41	75	12	245	45	14	12	27	1.81
11497296--11497733	83	5.3	82	82	8	394	46	13	12	27	1.79
11497346--11497734	166	2.3	166	84	4	498	47	13	11	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11498769--11498826	1	58.0	1	77	0	53	6	5	0	87	0.65
11498770--11498826	10	5.7	10	81	6	71	7	5	0	87	0.66
11498770--11498829	20	3.0	20	88	11	88	6	8	0	85	0.76
11498772--11498826	28	2.0	28	92	7	94	7	5	0	87	0.68
11508182--11508416	58	3.9	59	82	9	282	34	9	5	49	1.60
11508476--11508509	4	8.5	4	87	12	52	73	0	0	26	0.83
11508923--11508981	30	2.0	30	86	0	82	40	18	11	28	1.86
11509109--11509151	22	2.0	22	86	9	61	30	32	20	16	1.95
11511826--11511867	17	2.5	17	84	3	50	52	0	2	45	1.13
11511950--11511983	11	3.1	11	91	0	50	35	0	0	64	0.94
11511996--11512051	23	2.5	21	77	11	58	17	3	10	67	1.34
11512260--11512323	27	2.3	29	86	5	87	65	4	1	28	1.21
11512403--11512447	24	1.9	24	86	13	67	62	0	2	35	1.08
11512403--11512447	23	1.9	23	86	13	65	62	0	2	35	1.08
11512482--11512532	21	2.4	22	83	6	68	56	0	1	41	1.10
11512587--11512642	24	2.2	25	81	9	60	55	1	7	35	1.38
11513738--11513762	5	5.0	5	100	0	50	0	60	0	40	0.97
11516638--11516701	32	2.0	32	84	6	85	6	23	0	70	1.10
11520849--11520877	15	2.0	15	93	6	51	86	0	13	0	0.58
11522466--11522505	2	20.0	2	100	0	80	0	50	0	50	1.00
11523030--11523078	24	2.0	24	88	0	71	28	6	20	44	1.75
11531138--11531197	31	2.0	31	84	15	81	38	3	3	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11531134--11531212	32	2.5	33	76	19	80	36	3	2	56	1.31
11531437--11531490	22	2.4	23	81	3	65	38	5	1	53	1.35
11531562--11531591	13	2.2	14	94	5	53	46	0	0	53	1.00
11531632--11531683	25	2.2	24	86	6	70	42	3	7	46	1.51
11539606--11539635	12	2.6	11	90	10	51	86	0	13	0	0.57
11546504--11546565	21	3.0	21	88	2	90	19	1	29	50	1.57
11546802--11546875	7	11.3	7	72	17	61	22	1	31	44	1.61
11546765--11546874	19	5.8	19	72	14	59	21	1	32	43	1.63
11546759--11546867	12	9.2	12	71	20	70	21	1	33	44	1.63
11546778--11546874	45	2.2	44	88	5	142	21	2	34	42	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133