genome.fa.s645.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  29  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6828587--6828768	55	3.2	53	74	18	172	29	6	10	53	1.60
6828734--6828804	23	3.0	24	76	15	76	30	4	11	53	1.55
6828775--6828876	36	2.9	34	81	13	125	38	5	6	49	1.54
6828774--6828881	18	5.9	18	76	13	96	37	6	7	49	1.57
6835959--6836101	49	3.2	42	74	17	121	27	11	18	41	1.86
6835962--6836063	49	2.1	48	88	1	150	28	11	15	44	1.82
6836319--6836366	25	1.9	25	83	8	62	27	0	2	70	0.98
6836333--6836366	13	2.8	12	90	4	50	23	0	2	73	0.97
6836751--6836799	18	2.7	19	78	15	50	69	10	14	6	1.35
6837056--6837091	17	2.1	17	89	0	54	27	5	13	52	1.63
6837071--6837180	23	4.5	23	70	22	89	29	5	12	52	1.61
6837074--6837137	31	2.1	31	87	0	92	25	6	15	53	1.65
6837912--6837952	17	2.4	18	76	12	50	26	0	17	56	1.41
6838159--6838211	20	2.6	21	84	3	63	69	1	1	26	1.09
6838325--6838369	13	3.5	13	84	0	63	57	24	4	13	1.54
6845374--6845642	137	2.0	137	88	1	405	35	17	13	33	1.89
6845923--6845953	11	2.8	11	95	0	53	41	0	0	58	0.98
6849054--6849116	2	32.5	2	76	12	60	47	4	1	46	1.33
6850477--6850873	58	6.7	58	83	10	468	35	11	5	47	1.63
6850477--6850874	59	6.7	59	83	9	499	35	11	5	47	1.63
6850654--6850744	29	3.2	27	63	22	69	39	8	4	47	1.55
6850673--6850710	14	2.6	14	88	12	51	36	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6850908--6850984	6	13.7	6	71	13	56	77	1	6	14	1.02
6850920--6850972	17	3.1	17	83	5	72	81	1	3	13	0.92
6850927--6850984	17	3.4	17	72	13	57	79	1	5	13	0.98
6851007--6851048	4	10.8	4	89	5	68	76	2	0	21	0.90
6851854--6851898	9	4.8	9	81	8	54	80	2	2	15	0.92
6852058--6852116	11	5.3	11	76	8	57	76	0	5	18	0.97
6852065--6852111	22	2.3	21	83	16	64	74	0	6	19	1.03
6852325--6852622	41	7.1	41	85	4	328	37	20	16	25	1.93
6852329--6852619	83	3.5	83	83	3	332	38	19	16	25	1.92
6853875--6853916	22	2.0	21	86	9	59	7	14	0	78	0.95
6857778--6858171	59	6.7	58	85	8	505	35	11	6	46	1.67
6857776--6858174	177	2.2	179	92	4	650	35	11	7	45	1.68
6858206--6858282	6	13.7	6	72	13	56	77	1	6	14	1.02
6858219--6858270	17	3.1	17	83	5	70	80	1	3	13	0.93
6858225--6858282	17	3.4	17	72	13	57	79	1	5	13	0.98
6858834--6858885	25	2.2	23	83	10	61	48	13	3	34	1.61
6859142--6859212	22	3.3	21	72	12	65	70	7	4	18	1.27
6859343--6859435	5	18.2	5	75	16	68	77	1	3	18	0.96
6859308--6859426	6	20.3	6	70	17	72	77	0	4	17	0.98
6859308--6859426	11	10.2	11	75	18	75	77	0	4	17	0.98
6859328--6859435	28	3.9	28	75	14	82	75	0	2	20	0.98
6860239--6860267	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6861675--6861728	16	3.2	16	76	5	54	35	0	1	62	1.06
6862050--6862118	29	2.4	30	76	18	74	42	0	1	56	1.08
6862503--6862528	13	2.0	13	100	0	52	15	7	7	69	1.35
6863316--6863367	25	2.1	25	85	7	70	46	0	9	44	1.36
6865184--6865209	7	3.7	7	100	0	52	23	0	0	76	0.78
6865163--6865214	14	3.8	13	80	7	50	11	1	1	84	0.78
6865159--6865188	11	2.7	11	94	0	51	0	6	3	90	0.56
6865587--6865637	25	2.1	24	88	3	75	25	0	1	72	0.95
6866691--6866730	21	1.9	21	85	10	55	70	10	0	20	1.16
6867637--6867688	19	2.6	20	82	11	54	5	23	0	71	1.07
6867652--6867698	8	6.4	8	79	20	50	2	21	0	76	0.89
6867658--6867700	21	2.2	20	91	8	70	0	18	0	81	0.69
6867652--6867696	13	3.2	14	84	9	65	2	22	0	75	0.91
6879663--6879785	62	2.0	63	83	4	160	33	13	4	47	1.64
6879948--6880174	124	1.8	123	81	5	280	44	10	11	33	1.76
6880078--6880277	101	2.0	103	87	5	291	43	11	12	33	1.77
6880138--6880214	39	2.0	40	84	7	104	37	12	10	38	1.78
6880091--6880282	103	1.9	101	86	5	253	45	10	10	32	1.74
6884150--6884186	16	2.2	18	85	9	51	40	0	2	56	1.13
6884565--6884606	21	2.0	21	86	9	59	50	0	9	40	1.35
6884574--6884636	21	3.0	20	77	6	54	49	4	4	41	1.45
6884735--6884781	3	15.3	3	95	4	85	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6885556--6885585	9	3.3	9	90	0	51	36	3	30	30	1.74
6894076--6894120	22	2.0	22	100	0	90	20	17	22	40	1.92
6904972--6905058	43	2.0	43	97	0	165	40	14	8	36	1.76
6907992--6908036	3	15.0	3	100	0	90	33	0	0	66	0.92
6908897--6908978	17	4.9	16	70	19	51	19	6	2	71	1.18
6912276--6912611	61	5.7	59	85	10	438	35	11	7	45	1.68
6912276--6912612	119	2.8	117	87	7	450	35	11	7	45	1.68
6912740--6912780	4	10.8	4	84	10	59	75	2	0	21	0.92
6913331--6913355	10	2.5	10	100	0	50	60	24	0	16	1.36
6913591--6913703	21	5.2	21	73	16	88	65	9	6	18	1.43
6913591--6913707	45	2.7	43	80	7	112	66	9	5	17	1.40
6913821--6913875	6	8.5	6	78	11	56	78	1	1	18	0.94
6914144--6914444	41	7.3	41	90	1	467	37	21	16	24	1.93
6914144--6914444	125	2.4	123	93	2	512	37	21	16	24	1.93
6914144--6914450	83	3.7	82	90	2	326	37	21	15	24	1.93
6915459--6915522	9	7.4	9	91	7	98	12	12	0	75	1.06
6915459--6915520	17	3.6	17	85	8	90	11	11	0	77	1.00
6915459--6915519	8	7.2	8	89	9	79	11	11	0	77	1.01
6922742--6922773	15	2.1	16	94	5	57	56	6	18	18	1.62
6925532--6925928	60	6.7	60	84	9	521	35	11	6	45	1.67
6925532--6925928	118	3.3	118	91	3	620	35	11	6	45	1.67
6925855--6925894	16	2.4	17	83	8	55	45	0	5	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6925963--6926087	4	31.0	4	70	24	52	72	4	2	20	1.15
6925945--6926087	12	12.7	11	70	19	59	72	4	2	20	1.17
6925962--6926024	6	10.7	6	70	16	51	77	1	3	17	0.97
6925945--6926005	29	2.1	29	82	11	72	75	3	3	18	1.08
6925944--6926024	17	4.6	17	78	15	76	76	2	3	17	1.04
6926936--6927062	43	3.0	45	75	13	119	68	8	5	17	1.35
6927118--6927228	39	2.8	41	82	8	122	74	2	2	19	1.06
6927164--6927227	6	10.2	6	77	12	58	76	3	1	18	1.00
6929380--6929423	22	2.0	22	86	8	63	25	2	27	45	1.65
6931552--6931593	22	1.9	22	90	0	66	14	4	26	54	1.59
6932483--6932556	38	1.9	38	91	0	121	24	1	24	50	1.58
6938873--6938906	17	2.1	16	88	5	50	44	2	0	52	1.16
6940080--6940114	17	2.0	18	88	5	54	68	2	5	22	1.24
6941193--6941229	18	2.1	18	90	10	58	51	2	5	40	1.39
6943822--6943918	47	2.1	47	90	3	151	24	8	7	59	1.51
6944094--6944137	12	3.7	12	81	6	54	22	0	0	77	0.77
6944110--6944140	15	2.0	16	93	6	55	19	0	0	80	0.71
6945615--6945663	18	2.8	17	75	6	53	46	8	6	38	1.58
6945615--6945668	17	3.1	17	78	5	63	46	9	7	37	1.64
6945653--6945736	32	2.5	33	77	7	82	30	9	19	40	1.83
6945790--6945853	16	4.1	16	73	4	58	35	12	10	40	1.78
6946153--6946262	23	4.9	22	63	12	62	39	16	10	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946159--6946262	45	2.3	45	88	0	145	38	17	11	32	1.85
6946244--6946284	20	2.0	20	85	0	55	31	19	14	34	1.92
6946878--6947036	79	2.0	79	90	0	246	32	23	8	34	1.86
6947635--6947707	17	4.2	17	72	19	62	10	13	1	73	1.15
6947632--6947707	9	8.8	9	76	17	72	11	14	1	72	1.19
6947655--6947713	24	2.4	24	82	2	73	11	15	1	71	1.23
6953300--6953344	23	1.9	23	82	13	56	68	8	2	20	1.27
6954953--6955003	15	3.4	15	81	8	50	60	0	3	35	1.15
6961594--6961695	52	2.0	52	84	7	136	25	25	8	40	1.84
6961723--6961753	11	2.8	11	100	0	62	51	29	0	19	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133