genome.fa.s645.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  42  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9166996--9167138	61	2.3	61	78	8	144	51	4	5	37	1.47
9167139--9167239	43	2.3	44	79	6	107	45	7	9	36	1.67
9167174--9167335	43	3.8	43	74	6	105	48	8	8	34	1.63
9167227--9167276	21	2.3	22	80	10	59	52	12	2	34	1.50
9167421--9167472	22	2.4	22	80	0	59	51	9	5	32	1.58
9167459--9167521	22	2.8	22	78	2	72	47	3	7	41	1.48
9167459--9167511	11	4.8	11	77	9	54	47	1	9	41	1.47
9167642--9167702	22	2.8	22	87	5	79	50	4	6	37	1.50
9167610--9167720	22	5.1	22	75	9	75	46	7	8	37	1.61
9167963--9168428	22	21.0	22	69	10	135	48	6	8	36	1.60
9168201--9168291	43	2.1	44	83	6	114	47	5	9	37	1.60
9168465--9168560	22	4.5	21	70	15	72	50	7	5	37	1.53
9168478--9168562	44	2.0	42	82	15	104	51	8	4	35	1.53
9168548--9168668	22	5.5	22	71	3	82	46	8	8	37	1.64
9168558--9168653	44	2.2	44	81	3	104	47	8	8	35	1.64
9168989--9169038	21	2.4	21	80	6	57	44	18	4	34	1.68
9169057--9169103	21	2.2	21	88	0	67	55	6	4	34	1.45
9169075--9169130	27	2.1	27	86	6	78	57	10	1	30	1.43
9169170--9169195	9	2.9	9	100	0	52	30	11	0	57	1.34
9170150--9170253	55	1.9	54	94	2	181	47	7	8	36	1.63
9170150--9170239	30	3.2	30	62	20	75	45	8	8	36	1.67
9170251--9171335	500	2.2	501	92	1	1809	42	12	10	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9188724--9188766	21	2.1	20	82	4	50	30	0	0	69	0.88
9188792--9189045	104	2.5	103	77	13	247	45	9	5	39	1.60
9189047--9189087	22	1.9	21	85	5	55	46	2	4	46	1.37
9194781--9194809	15	1.9	15	100	0	58	34	6	13	44	1.71
9200532--9200675	42	3.4	42	86	2	171	28	9	15	46	1.77
9200664--9200967	44	7.0	43	75	7	208	25	12	16	46	1.81
9200664--9200967	88	3.5	87	78	7	271	25	12	16	46	1.81
9201165--9201201	18	2.1	18	89	0	56	27	2	2	67	1.17
9201557--9201581	5	5.0	5	100	0	50	20	0	20	60	1.37
9202005--9202046	20	2.1	20	86	8	59	23	0	2	73	0.94
9202044--9202320	105	2.7	103	78	10	282	41	9	6	42	1.64
9202135--9202341	105	2.0	105	84	6	276	42	7	7	42	1.61
9210866--9210901	15	2.4	15	95	0	63	47	8	19	25	1.77
9211075--9211155	22	3.6	21	70	9	63	49	17	1	32	1.54
9211075--9211159	23	3.8	22	71	10	73	48	16	1	34	1.54
9211085--9211214	46	2.8	45	77	4	125	44	12	4	38	1.63
9212650--9212696	24	1.9	25	86	4	69	4	19	0	76	0.95
9212640--9212696	6	9.5	6	75	12	55	3	17	0	78	0.88
9216242--9216267	4	6.5	4	100	0	52	76	0	0	23	0.78
9216831--9217028	103	1.9	103	84	0	261	37	10	10	41	1.73
9217197--9217259	23	2.4	28	85	12	82	50	14	4	30	1.63
9219939--9220045	54	2.0	54	98	0	205	42	3	11	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9224639--9224683	22	2.0	22	86	0	63	20	11	24	44	1.83
9225634--9225667	7	5.1	7	96	3	54	14	8	0	76	1.01
9225799--9225885	42	2.1	42	88	0	129	39	2	5	52	1.38
9226066--9226202	42	2.9	50	76	17	148	39	1	5	53	1.34
9227704--9227991	143	2.0	142	94	0	504	41	5	9	44	1.59
9228205--9228242	20	1.9	19	89	5	58	26	0	2	71	1.00
9228253--9228296	20	2.2	20	84	8	54	72	4	6	15	1.22
9229526--9229849	66	4.9	66	76	6	228	46	13	20	20	1.83
9229591--9229841	132	1.9	132	81	4	301	47	13	18	19	1.82
9229577--9229869	66	4.4	65	76	2	253	47	13	19	19	1.83
9229577--9229869	132	2.2	130	76	6	293	47	13	19	19	1.83
9231517--9231561	15	3.2	15	82	17	53	6	15	0	77	0.96
9231538--9231574	12	3.0	12	92	4	56	10	8	0	81	0.89
9234221--9234742	263	2.0	260	94	2	913	29	13	14	42	1.84
9238547--9238581	5	7.0	5	100	0	70	40	20	0	40	1.52
9239857--9239884	6	4.7	6	100	0	56	50	0	0	50	1.00
9240105--9240173	22	3.0	23	70	10	61	44	0	1	53	1.09
9240182--9240226	23	2.0	23	81	0	54	55	0	0	44	0.99
9240988--9241034	18	2.6	19	76	10	53	70	6	8	14	1.32
9241018--9241055	14	2.7	14	76	15	51	78	0	5	15	0.91
9244587--9244626	21	2.0	20	85	5	53	52	5	2	40	1.37
9247374--9247406	15	2.2	15	89	10	50	45	6	3	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9248873--9248899	4	6.8	4	100	0	54	74	0	0	25	0.83
9250269--9250331	15	4.3	15	69	18	53	79	4	11	4	1.04
9250278--9250332	28	2.0	28	85	7	76	81	3	10	3	0.93
9251569--9251617	11	4.5	11	82	12	57	81	4	6	8	0.97
9256947--9257004	29	2.0	29	82	0	71	63	1	5	29	1.25
9257930--9257973	21	2.0	22	86	4	63	40	0	0	59	0.98
9258928--9258966	2	19.5	2	100	0	78	0	51	0	48	1.00
9263462--9263536	29	2.5	31	79	16	86	52	1	2	44	1.23
9264379--9264428	21	2.4	20	83	9	64	72	0	6	22	1.07
9289828--9289874	20	2.3	20	85	10	60	57	4	8	29	1.48
9294303--9294352	25	2.0	26	88	4	75	60	10	6	24	1.51
9295756--9295789	16	2.1	17	89	10	54	55	0	11	32	1.36
9297206--9297265	24	2.5	23	84	7	75	40	8	6	45	1.61
9297254--9297311	23	2.6	23	80	2	64	27	12	8	51	1.68
9299368--9299413	19	2.4	19	85	7	58	23	13	0	63	1.30
9306673--9306720	22	2.1	24	85	14	66	47	0	0	52	1.00
9312572--9312637	26	2.6	25	75	15	71	48	0	3	48	1.17
9312580--9312612	17	1.9	17	88	11	50	48	0	6	45	1.27
9312658--9312703	19	2.4	18	85	7	56	56	0	0	43	0.99
9312721--9312793	26	2.7	26	74	15	69	38	2	1	57	1.22
9312789--9312839	21	2.4	21	84	9	68	49	0	1	49	1.12
9316602--9316629	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9321103--9321133	16	1.9	16	93	0	53	25	12	12	48	1.77
9324565--9324638	16	4.6	16	81	0	94	47	0	4	48	1.20
9325014--9325052	20	2.0	20	85	10	53	15	2	7	74	1.15
9325062--9325108	24	1.9	25	82	4	60	44	14	0	40	1.46
9330951--9330992	2	21.0	2	85	0	57	0	42	7	50	1.30
9330947--9330989	20	2.2	20	100	0	86	0	39	9	51	1.34
9332490--9332544	28	2.0	28	85	0	74	54	7	3	34	1.46
9333872--9333922	21	2.4	22	80	3	59	45	0	3	50	1.20
9333656--9333973	129	2.5	124	76	13	290	29	9	7	54	1.59
9334277--9334317	21	1.9	21	85	14	57	48	0	2	48	1.14
9334624--9334678	24	2.5	21	80	16	58	45	1	1	50	1.22
9335476--9335525	21	2.4	21	83	6	66	20	6	2	72	1.16
9335814--9335873	29	2.1	29	84	6	77	46	0	1	51	1.10
9335806--9335917	35	3.3	35	72	15	101	47	1	0	50	1.18
9335826--9335927	32	3.0	32	77	7	96	44	3	0	50	1.27
9336165--9336217	21	2.6	19	77	19	54	45	1	3	49	1.31
9336458--9336500	18	2.4	18	84	7	52	44	4	2	48	1.36
9337352--9337376	2	12.5	2	100	0	50	0	0	48	52	1.00
9338030--9338072	2	21.5	2	100	0	86	48	0	0	51	1.00
9347459--9347488	15	2.1	15	93	6	53	83	6	10	0	0.81
9350126--9350168	19	2.3	18	88	4	59	34	16	6	41	1.75
9351523--9351562	18	2.2	18	86	8	55	45	15	10	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9352721--9352777	25	2.2	27	87	9	84	49	0	0	50	1.00
9352720--9352780	27	2.4	25	79	17	72	49	0	0	50	1.00
9353449--9353507	29	2.1	27	84	6	73	54	1	0	44	1.10
9353453--9353514	29	2.2	28	82	2	70	54	4	0	40	1.22
9355101--9355144	23	1.9	23	86	9	63	45	4	4	45	1.44
9355127--9355209	35	2.4	35	82	9	107	57	1	3	37	1.24
9355183--9355229	23	2.0	25	87	8	71	61	4	2	31	1.27
9355596--9355639	18	2.5	17	82	10	52	31	0	2	65	1.05
9358574--9358616	19	2.3	18	80	7	50	27	0	9	62	1.25
9366448--9366476	3	9.7	3	100	0	58	65	0	34	0	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133