genome.fa.s645.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  98  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18993408--18993443	12	2.7	14	83	16	58	13	22	11	52	1.72
18998266--18998323	20	2.7	21	80	20	75	53	0	24	22	1.46
19004233--19004267	15	2.3	15	90	0	52	57	11	0	31	1.34
19004597--19004656	30	2.0	31	96	3	113	55	0	5	40	1.22
19005216--19005240	2	12.5	2	100	0	50	48	0	0	52	1.00
19006835--19006878	23	2.0	22	81	4	52	38	4	2	54	1.33
19007980--19008061	24	3.4	24	86	0	110	21	34	24	19	1.97
19012192--19012221	6	4.8	6	92	8	51	16	0	0	83	0.65
19012192--19012221	13	2.4	13	94	5	53	16	0	0	83	0.65
19012208--19012306	30	3.5	29	70	13	89	27	4	2	66	1.20
19012273--19012326	23	2.4	21	82	11	63	31	1	1	64	1.14
19012209--19012343	52	2.5	54	81	9	152	29	4	2	63	1.26
19012243--19012354	25	4.5	24	77	12	95	31	4	1	62	1.25
19013148--19013253	16	6.8	16	75	15	64	26	2	2	67	1.18
19013156--19013253	10	10.2	10	71	18	50	25	3	3	68	1.19
19013204--19013256	5	10.6	5	88	8	81	20	1	0	77	0.87
19013281--19013499	59	3.7	59	86	6	302	45	5	10	37	1.64
19013283--19013496	118	1.8	116	89	4	340	45	5	11	37	1.63
19023926--19023979	19	2.8	20	84	15	71	75	0	12	11	1.04
19023913--19023987	31	2.4	30	84	13	89	74	0	14	10	1.07
19024996--19025319	41	7.8	41	80	9	142	25	15	19	39	1.91
19025029--19025376	41	8.2	41	83	6	295	25	15	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19025084--19025305	83	2.7	83	85	3	295	27	16	17	38	1.91
19025563--19025664	30	3.5	30	71	11	86	29	3	1	64	1.22
19025565--19025702	56	2.5	55	82	8	156	31	5	1	62	1.26
19026584--19026621	19	2.0	20	94	5	69	18	5	0	76	0.97
19026631--19026869	59	4.1	58	81	7	254	43	6	10	39	1.64
19030930--19030978	21	2.3	21	82	6	55	38	4	14	42	1.64
19031998--19032036	10	3.5	11	82	10	53	56	0	0	43	0.99
19032914--19032947	17	2.0	17	100	0	68	35	5	35	23	1.79
19034038--19034084	24	2.0	24	86	0	67	80	0	8	10	0.89
19035943--19035978	18	2.0	18	88	0	54	66	0	0	33	0.92
19036169--19036203	16	2.1	16	89	5	52	54	2	0	42	1.15
19036151--19036196	24	2.0	23	91	4	74	63	2	0	34	1.07
19036181--19036239	30	2.0	29	86	3	82	44	1	0	54	1.10
19036216--19036267	19	2.9	18	75	8	61	55	3	0	40	1.18
19036419--19036483	16	3.8	17	76	14	62	35	1	0	63	1.04
19042312--19043263	370	2.6	369	96	1	1780	17	34	25	23	1.96
19044844--19045063	105	2.0	108	90	7	349	28	15	25	30	1.95
19051864--19051898	12	2.9	12	91	0	52	22	34	8	34	1.85
19052419--19052444	1	26.0	1	100	0	52	0	0	0	100	0.00
19056354--19056391	17	2.2	17	95	0	67	13	0	34	52	1.40
19057659--19057754	35	2.8	35	81	10	101	15	12	52	19	1.75
19057684--19057754	35	2.0	35	88	0	106	15	14	53	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19057775--19057808	8	4.1	8	88	3	50	14	2	0	82	0.79
19057832--19057890	21	2.8	21	84	5	66	42	1	0	55	1.09
19058115--19058438	110	3.0	108	85	3	398	38	19	19	21	1.93
19058405--19058478	23	3.3	22	81	7	78	36	20	18	24	1.95
19058538--19058816	112	2.5	112	84	2	355	41	16	20	22	1.90
19059162--19059266	41	2.6	41	87	6	142	29	16	20	34	1.94
19067504--19067541	17	2.2	17	95	0	67	13	0	31	55	1.38
19068998--19069050	23	2.4	22	75	12	54	37	1	0	60	1.08
19074687--19074732	18	2.8	16	80	9	56	43	13	4	39	1.63
19076325--19076386	31	2.0	32	84	9	83	56	6	4	32	1.46
19079293--19079451	24	6.7	24	76	4	142	35	14	5	44	1.69
19082891--19082928	15	2.6	15	88	12	53	0	21	2	76	0.91
19095896--19095946	26	1.9	27	84	4	68	43	11	9	35	1.75
19096020--19096303	49	5.8	49	82	3	304	29	11	20	38	1.87
19096020--19096303	99	2.9	98	83	5	349	29	11	20	38	1.87
19096275--19096561	44	6.5	44	78	4	226	29	14	14	41	1.86
19096287--19096577	132	2.2	131	81	7	329	28	14	15	40	1.87
19096280--19096539	88	3.0	86	81	2	252	30	14	15	40	1.87
19097440--19097488	26	1.9	25	87	4	71	34	20	12	32	1.90
19098940--19099176	90	2.6	91	83	3	298	34	10	16	37	1.84
19098940--19099191	92	2.8	89	82	3	299	33	11	17	38	1.85
19099140--19099224	44	1.9	44	90	0	134	29	15	17	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19100830--19100861	2	16.5	2	93	6	57	50	0	0	50	1.00
19101641--19101665	1	25.0	1	100	0	50	100	0	0	0	0.00
19102039--19102067	2	15.0	2	92	7	51	48	0	0	51	1.00
19102862--19103033	86	2.0	86	85	4	231	38	13	9	38	1.77
19106617--19106663	14	3.4	14	85	2	51	48	0	2	48	1.13
19107503--19107548	24	1.9	24	90	0	74	56	8	8	26	1.58
19107839--19107868	14	2.1	14	93	0	51	46	0	16	36	1.47
19109578--19109606	13	2.2	13	100	0	58	86	0	0	13	0.58
19122121--19122194	22	3.2	25	78	18	88	52	0	1	45	1.09
19122118--19122210	19	4.8	20	72	21	58	52	0	1	46	1.07
19122158--19122202	18	2.4	19	81	3	56	53	0	2	44	1.13
19122181--19122228	22	2.2	22	92	0	78	62	0	2	35	1.07
19136218--19136267	21	2.4	22	80	10	59	36	0	20	44	1.52
19136841--19136899	31	1.9	31	82	6	75	49	8	10	32	1.67
19137128--19138058	466	2.0	467	93	0	1612	42	18	13	25	1.87
19140711--19140772	31	2.0	32	84	9	83	56	6	4	32	1.46
19143712--19143870	24	6.7	24	76	4	142	35	14	5	44	1.69
19147314--19147351	15	2.7	15	88	8	53	0	23	2	73	0.95
19161355--19161389	17	2.1	16	89	5	52	22	2	11	62	1.41
19165074--19165136	24	2.9	21	80	13	81	49	0	1	49	1.10
19165080--19165148	25	2.8	25	80	10	79	49	0	1	49	1.09
19165076--19165148	23	3.1	24	82	11	80	52	0	1	46	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19165073--19165149	22	3.4	24	74	15	74	51	0	1	46	1.09
19165110--19165164	16	3.0	20	80	17	57	52	0	1	45	1.11
19165142--19165180	20	2.0	20	94	0	69	61	0	2	35	1.10
19189408--19189433	2	13.0	2	100	0	52	50	0	0	50	1.00
19196297--19196412	54	2.1	57	85	11	159	24	22	16	37	1.94
19196714--19196751	20	2.0	20	94	5	69	60	0	5	34	1.19
19198038--19198092	28	2.0	28	88	0	83	21	23	9	45	1.80
19211980--19212095	54	2.1	57	85	11	159	24	22	16	37	1.94
19212397--19212434	20	2.0	20	94	5	69	60	0	5	34	1.19
19213740--19213794	29	1.9	28	92	3	92	21	23	9	45	1.80
19220842--19220886	6	7.5	6	87	0	63	0	46	2	51	1.13
19220850--19220884	12	2.9	12	100	0	70	0	42	0	57	0.99
19224077--19224112	17	2.1	18	89	5	56	66	0	0	33	0.92
19224201--19224240	17	2.4	17	100	0	80	37	35	7	20	1.81
19224853--19224971	34	3.5	35	77	10	122	57	15	13	13	1.66
19225518--19225624	18	5.9	18	75	16	105	28	3	36	30	1.75
19225517--19225581	33	2.0	33	87	6	96	27	4	33	33	1.78
19225578--19225618	21	2.0	21	95	0	73	29	2	41	26	1.69
19229407--19229455	25	1.9	26	91	4	82	40	10	2	46	1.49
19229682--19229719	20	2.0	20	89	5	60	60	5	0	34	1.19
19232087--19232133	19	2.5	19	85	0	58	48	31	10	8	1.68
19234391--19234419	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19236299--19236325	2	13.5	2	100	0	54	51	0	0	48	1.00
19238639--19238708	33	2.1	34	84	12	92	31	12	10	45	1.75
19239573--19239598	11	2.4	11	100	0	52	38	0	0	61	0.96
19243539--19243581	22	2.0	21	82	17	52	0	4	20	74	1.00
19243786--19244561	70	11.1	70	72	4	418	45	12	20	21	1.83
19244006--19244113	36	3.0	36	74	5	103	44	11	20	24	1.83
19244095--19244362	141	1.9	141	79	1	304	46	11	20	21	1.82
19243793--19244317	35	14.9	35	67	5	182	46	12	19	20	1.83
19243842--19244561	212	3.4	211	82	3	797	46	11	20	21	1.83
19244425--19244536	35	3.2	35	71	11	102	44	9	21	24	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133