genome.fa.s645.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  77  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15243667--15243891	67	3.4	67	84	3	292	38	20	12	27	1.90
15243803--15243888	34	2.6	34	75	15	97	38	17	12	31	1.87
15243949--15244030	35	2.3	35	74	0	83	17	14	15	52	1.75
15245289--15245318	16	1.9	15	93	6	51	66	10	10	13	1.44
15246957--15246981	2	12.5	2	100	0	50	52	0	0	48	1.00
15248307--15248350	18	2.4	19	84	3	54	77	4	2	15	1.04
15251873--15251897	2	12.5	2	100	0	50	48	0	0	52	1.00
15254231--15254260	8	3.9	8	95	4	53	13	0	0	86	0.57
15254386--15254429	21	2.2	20	84	12	54	40	0	4	54	1.21
15254644--15254699	21	2.6	21	81	13	62	7	7	7	78	1.09
15254665--15254698	15	2.3	15	90	10	52	2	8	5	82	0.93
15256292--15256337	23	2.0	23	82	4	56	10	4	4	80	0.99
15256753--15256788	2	18.0	2	88	0	54	44	0	5	50	1.25
15259694--15259729	18	2.1	18	89	5	56	25	8	5	61	1.46
15260001--15260026	6	4.3	6	100	0	52	15	0	15	69	1.20
15260864--15260897	17	2.0	17	88	0	50	41	0	26	32	1.56
15266683--15266837	71	2.2	73	80	5	172	29	6	15	49	1.69
15267325--15267369	22	2.0	22	83	8	56	33	6	2	57	1.37
15268752--15268816	30	2.2	29	83	2	76	40	1	3	55	1.25
15269532--15269577	23	2.0	23	83	8	58	78	4	6	10	1.08
15270273--15270315	17	2.6	15	82	17	50	83	0	11	4	0.78
15270273--15270311	12	3.4	11	82	10	51	84	0	10	5	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15273381--15273424	23	2.0	22	86	4	61	47	11	11	29	1.74
15276794--15277049	133	1.9	133	88	3	381	37	14	18	29	1.91
15280335--15280381	13	3.8	12	78	15	51	10	2	6	80	0.96
15281118--15281149	4	8.0	4	100	0	64	75	0	0	25	0.81
15285284--15285326	17	2.6	17	85	3	52	25	6	18	48	1.73
15290631--15290973	145	2.4	142	83	5	415	43	9	13	33	1.76
15299109--15301810	161	17.0	160	73	8	1895	31	9	15	43	1.78
15299126--15301810	321	8.4	321	81	5	2071	31	9	15	43	1.78
15299624--15301335	801	2.1	792	79	5	1750	31	9	15	42	1.79
15302130--15302178	20	2.5	19	80	3	53	46	8	16	28	1.75
15302333--15302867	145	3.7	139	78	10	468	33	15	10	41	1.81
15304415--15304449	18	1.9	18	88	0	52	17	11	22	48	1.79
15311977--15312004	12	2.3	12	100	0	56	17	10	17	53	1.72
15312614--15312828	49	4.3	49	82	7	229	34	15	13	35	1.88
15312851--15312918	29	2.3	29	90	5	102	33	16	16	33	1.91
15313517--15314066	144	3.8	143	76	7	526	32	13	10	42	1.80
15315664--15315701	18	2.2	18	90	4	60	13	13	23	50	1.76
15317756--15317781	13	2.0	13	100	0	52	46	7	0	46	1.31
15329966--15330046	12	6.8	12	74	5	65	39	7	20	32	1.81
15329966--15330046	24	3.4	24	71	6	74	39	7	20	32	1.81
15330353--15330387	16	2.2	16	90	10	54	68	0	8	22	1.16
15331577--15331641	31	2.1	31	91	5	105	30	30	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15332693--15332818	33	3.8	33	77	3	128	22	31	3	42	1.72
15335455--15335503	21	2.2	22	85	7	64	51	6	0	42	1.27
15335454--15335537	37	2.3	36	81	8	89	52	3	0	44	1.18
15335587--15335673	33	2.4	38	75	16	94	52	1	1	44	1.15
15335642--15335703	25	2.5	25	84	2	72	53	1	0	45	1.10
15336028--15336091	31	2.1	29	83	11	76	50	6	9	34	1.60
15336293--15336333	18	2.3	18	86	0	55	39	2	0	58	1.11
15336373--15336411	21	1.9	20	89	5	60	66	0	0	33	0.92
15337500--15337563	29	2.2	28	81	10	76	64	7	10	17	1.48
15351324--15351554	35	6.6	35	71	10	123	54	8	19	16	1.68
15351463--15351583	35	3.4	34	78	4	107	57	9	14	19	1.65
15351538--15351616	35	2.2	35	82	6	88	59	10	12	17	1.60
15353070--15353111	23	1.9	23	85	9	61	7	14	0	78	0.95
15359064--15360053	236	4.2	235	80	4	1052	33	9	11	46	1.72
15359022--15360036	469	2.2	467	81	4	1114	32	9	11	46	1.72
15360030--15360076	14	3.4	14	82	5	51	31	0	10	57	1.33
15361151--15361194	23	1.9	23	95	0	79	29	15	6	47	1.72
15371303--15371351	24	2.1	24	96	3	91	46	8	14	30	1.73
15374177--15374211	16	2.2	16	89	0	52	45	8	14	31	1.75
15381090--15381839	202	3.7	199	80	5	736	35	11	11	41	1.77
15381702--15381764	29	2.2	30	80	13	78	28	15	7	47	1.74
15386870--15386917	15	3.2	15	87	0	60	29	6	4	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15386870--15386908	3	13.0	3	88	0	51	28	2	5	64	1.28
15387146--15387210	32	2.0	33	96	3	123	43	9	4	43	1.57
15389644--15389680	15	2.5	15	87	12	58	8	0	2	89	0.58
15389646--15389690	21	2.1	21	91	0	72	8	2	6	82	0.93
15390204--15390258	22	2.5	22	93	0	92	10	29	1	58	1.43
15392339--15392369	6	5.2	6	96	0	53	12	3	0	83	0.75
15394987--15395017	7	4.3	7	95	4	53	70	12	3	12	1.27
15394969--15395018	15	3.2	16	81	13	59	74	10	4	12	1.21
15403218--15403356	71	2.0	71	85	0	188	45	15	15	23	1.84
15403830--15403854	11	2.3	11	100	0	50	32	0	16	52	1.44
15406607--15406631	13	1.9	13	100	0	50	24	0	0	76	0.80
15410189--15410262	35	2.1	35	94	0	130	35	16	20	28	1.94
15411038--15411077	18	2.2	19	90	4	64	70	5	2	22	1.19
15411044--15411098	8	6.9	8	74	13	51	70	1	3	23	1.12
15411044--15411100	25	2.3	24	85	11	71	70	1	3	24	1.13
15411128--15411174	21	2.4	18	80	19	51	70	0	2	27	0.99
15411128--15411174	10	4.9	9	80	19	51	70	0	2	27	0.99
15412514--15412710	98	2.0	100	85	2	272	22	15	23	38	1.93
15413502--15413526	13	1.9	13	100	0	50	64	16	0	20	1.30
15414419--15414473	19	2.8	19	73	10	58	45	23	9	21	1.80
15415821--15415861	21	2.0	21	90	9	66	36	7	9	46	1.65
15423032--15423213	97	1.9	97	91	2	303	28	13	10	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15424100--15424362	144	1.8	144	85	4	370	32	15	12	38	1.86
15433557--15433621	24	2.8	23	73	15	71	60	10	6	23	1.52
15433629--15433688	13	4.6	13	70	15	52	61	10	3	25	1.43
15433925--15434392	242	1.9	238	82	9	581	38	11	10	39	1.76
15434369--15434463	49	1.9	49	85	4	129	36	11	10	41	1.76
15434418--15434625	64	3.3	62	75	7	197	49	9	6	34	1.62
15436752--15436867	7	17.6	7	74	15	79	45	38	0	15	1.46
15436753--15436867	13	8.8	13	77	5	88	45	39	0	15	1.47
15438640--15438708	3	24.0	3	72	19	58	31	4	0	63	1.14
15438662--15438711	21	2.3	22	86	10	68	36	0	0	64	0.94
15438663--15438701	19	2.1	19	90	4	62	30	0	0	69	0.89
15439615--15439645	11	2.7	12	90	10	55	0	9	6	83	0.79
15440216--15440486	145	1.9	144	84	8	363	39	12	15	33	1.85
15441002--15441060	26	2.3	26	88	11	86	61	8	15	15	1.56
15441153--15441236	35	2.4	34	76	11	89	51	13	17	17	1.77
15441047--15441604	36	15.5	36	71	8	177	50	12	19	18	1.78
15441198--15441461	145	1.8	145	80	3	325	48	11	21	17	1.79
15441379--15441513	73	1.9	70	81	4	162	45	13	22	18	1.84
15441452--15441563	35	3.2	35	82	3	100	50	15	17	16	1.78
15441262--15441645	36	10.6	34	73	9	113	50	14	18	17	1.78
15441504--15441644	36	3.9	37	81	3	144	53	15	14	15	1.73
15442785--15442818	11	3.2	11	87	4	52	5	0	2	91	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15442657--15442965	156	2.0	156	85	6	421	18	17	8	55	1.66
15446405--15446445	18	2.3	18	95	0	73	43	26	0	29	1.55
15453264--15453294	16	1.9	16	93	0	53	77	0	0	22	0.77
15457064--15457099	17	2.2	16	90	5	54	88	0	11	0	0.50
15457066--15457105	13	2.9	14	88	7	64	85	0	15	0	0.61
15457064--15457106	11	4.2	10	82	11	52	86	0	13	0	0.58
15457694--15457735	17	2.4	18	80	11	52	73	2	9	14	1.18
15459547--15459657	34	3.4	33	72	9	102	34	12	24	28	1.92
15460453--15460501	8	6.1	8	79	15	57	71	10	6	12	1.30
15460453--15460501	25	2.0	23	88	7	71	71	10	6	12	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133