genome.fa.s645.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  121  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23170008--23170258	30	8.6	28	72	13	134	20	3	30	45	1.66
23169972--23170054	37	2.2	37	78	4	87	19	0	36	44	1.51
23170009--23170234	58	3.9	57	74	10	185	20	3	30	46	1.67
23170201--23170266	31	2.2	31	86	2	89	21	1	25	51	1.56
23170538--23170581	20	2.3	18	78	14	52	27	0	0	72	0.85
23170550--23170583	6	5.3	6	93	6	50	20	0	0	79	0.73
23171728--23171776	14	3.3	15	83	11	57	26	4	0	69	1.06
23171728--23171777	15	3.4	15	81	13	59	26	4	0	70	1.05
23171739--23171784	15	2.7	18	75	25	55	26	4	0	69	1.07
23177129--23177156	2	14.0	2	100	0	56	50	0	0	50	1.00
23189894--23189942	22	2.2	22	85	0	62	16	4	26	53	1.61
23189997--23190022	2	13.0	2	100	0	52	50	0	0	50	1.00
23191047--23191075	2	14.5	2	100	0	58	0	51	0	48	1.00
23193592--23193625	15	2.3	15	94	0	59	23	17	11	47	1.81
23194507--23194542	18	2.1	17	89	5	54	30	5	0	63	1.17
23194878--23194916	20	1.9	21	84	5	53	33	12	0	53	1.39
23194913--23194973	30	2.1	30	87	3	88	27	6	11	54	1.61
23194905--23194966	30	2.1	30	93	0	106	25	9	9	54	1.63
23195414--23195447	17	1.9	18	88	5	52	58	0	5	35	1.22
23200472--23200496	9	2.8	9	100	0	50	68	0	32	0	0.90
23207496--23207551	13	4.7	11	77	16	58	30	3	0	66	1.09
23207489--23207535	24	2.0	24	91	0	76	29	2	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23207495--23207551	24	2.4	23	85	8	78	31	3	0	64	1.10
23207601--23207646	24	2.0	24	91	4	76	41	4	0	54	1.20
23207725--23207777	23	2.3	23	93	6	90	39	13	0	47	1.43
23218302--23218338	16	2.3	16	90	0	56	43	24	0	32	1.55
23235958--23236108	72	2.1	72	82	0	176	28	22	21	27	1.99
23253326--23253360	3	11.3	3	93	6	61	31	0	0	68	0.90
23258619--23258670	24	2.1	25	96	3	97	23	0	9	67	1.20
23267041--23267072	16	2.0	16	100	0	64	37	18	25	18	1.94
23277346--23277387	22	1.9	22	85	0	57	33	4	2	59	1.31
23277370--23277405	17	2.0	19	89	10	58	30	0	5	63	1.17
23281726--23281755	2	15.0	2	100	0	60	50	0	0	50	1.00
23282592--23282619	6	4.7	6	100	0	56	67	0	0	32	0.91
23285853--23285945	48	1.9	48	95	0	168	32	16	20	31	1.94
23286561--23286593	6	5.5	6	100	0	66	33	0	18	48	1.48
23289024--23289057	2	17.0	2	100	0	68	50	50	0	0	1.00
23289057--23289089	2	16.5	2	100	0	66	51	0	0	48	1.00
23291160--23291224	19	3.4	19	86	0	76	26	10	23	40	1.87
23293739--23294070	132	2.5	134	81	9	378	40	19	12	28	1.87
23293976--23294174	101	2.0	101	82	4	240	40	19	13	27	1.89
23296863--23296902	10	4.1	10	87	3	55	2	10	0	87	0.63
23296859--23296885	14	1.9	14	100	0	54	0	7	0	92	0.38
23296860--23296905	17	2.7	17	86	0	65	4	13	0	82	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23297325--23297560	117	2.0	117	93	2	402	29	11	16	42	1.83
23302550--23302602	11	4.8	11	75	9	54	58	5	0	35	1.22
23302579--23302624	24	2.0	23	83	12	58	54	6	0	39	1.26
23303437--23303480	23	2.0	22	86	4	61	38	2	2	56	1.24
23303535--23303593	21	2.8	21	72	27	54	57	3	1	37	1.25
23308984--23309023	10	4.1	10	87	3	55	2	10	0	87	0.63
23308980--23309006	14	1.9	14	100	0	54	0	7	0	92	0.38
23308981--23309026	17	2.7	17	86	0	65	4	13	0	82	0.81
23309449--23309683	116	2.0	117	93	3	402	29	11	17	42	1.83
23314685--23314750	11	5.8	11	72	19	55	56	4	0	39	1.20
23315572--23315615	23	2.0	22	86	4	61	38	0	2	59	1.10
23315670--23315729	21	2.8	22	72	23	56	58	3	1	36	1.25
23318132--23318192	32	1.9	32	96	0	113	27	19	18	34	1.95
23319536--23319593	26	2.3	25	82	11	73	37	8	1	51	1.43
23328139--23328163	2	12.5	2	100	0	50	52	0	0	48	1.00
23328783--23328839	31	1.9	30	82	10	73	50	3	5	40	1.42
23329911--23329943	3	11.0	3	100	0	66	66	0	0	33	0.92
23337134--23337212	34	2.3	34	95	0	140	18	7	18	54	1.67
23337079--23337194	55	2.1	54	88	6	171	21	8	18	50	1.73
23337438--23337494	30	1.9	30	85	0	78	45	0	1	52	1.11
23342894--23342933	21	1.9	21	100	0	80	45	25	15	15	1.84
23349306--23349738	216	2.0	216	94	0	767	35	15	20	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23349576--23349920	144	2.4	143	78	10	364	34	15	19	30	1.93
23349967--23350178	72	2.9	71	83	2	262	32	12	23	31	1.92
23352440--23352549	25	4.6	25	83	8	147	39	8	16	36	1.78
23352437--23352549	46	2.4	48	88	5	158	38	8	15	37	1.79
23352437--23352573	46	3.0	44	81	13	143	36	8	16	37	1.80
23352657--23352700	20	2.2	19	84	8	52	43	11	11	34	1.77
23352623--23352816	94	2.1	94	86	0	262	39	11	11	37	1.77
23353359--23353574	43	5.0	43	79	7	222	23	13	18	44	1.85
23353359--23353574	87	2.5	87	84	3	267	23	13	18	44	1.85
23355477--23355543	26	2.7	25	83	4	73	41	2	7	47	1.47
23367606--23367656	26	2.1	25	85	10	70	39	11	7	41	1.71
23376604--23376639	16	2.3	16	90	4	56	41	0	16	41	1.48
23377123--23377147	13	1.9	13	100	0	50	32	0	8	60	1.26
23381395--23381642	126	2.0	126	86	6	351	33	16	22	27	1.95
23382025--23382211	72	2.6	71	86	6	243	34	13	21	29	1.92
23382025--23382236	72	2.9	72	85	4	232	34	13	23	28	1.92
23384396--23384443	2	24.0	2	100	0	96	50	0	0	50	1.00
23385296--23385342	22	2.2	22	88	11	71	48	8	8	34	1.64
23385544--23385615	22	3.4	21	81	9	83	44	4	12	38	1.62
23385671--23385712	22	1.9	22	85	0	57	57	4	4	33	1.41
23386858--23386906	25	1.9	25	83	4	62	32	2	2	63	1.17
23387301--23387497	98	2.0	98	98	0	385	22	24	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23407139--23407190	23	2.4	21	78	18	54	51	0	0	48	1.00
23407341--23407370	6	5.0	6	100	0	60	33	0	50	16	1.46
23407758--23407799	13	3.2	13	77	9	50	59	0	2	38	1.10
23414661--23414727	29	2.4	27	75	15	66	44	5	1	47	1.36
23414668--23414729	29	2.1	29	82	5	72	43	6	1	48	1.38
23418602--23418634	13	2.5	13	90	9	50	57	0	0	42	0.98
23429382--23429484	51	2.0	52	96	1	190	42	0	21	35	1.53
23429403--23429481	25	3.1	25	70	22	83	44	0	20	35	1.52
23431481--23431505	7	3.6	7	100	0	50	12	0	0	88	0.53
23436618--23436666	15	3.1	15	83	11	71	57	4	0	38	1.18
23436654--23436722	10	6.5	10	72	18	59	46	4	1	47	1.31
23436569--23436715	34	4.4	33	74	6	109	43	5	4	46	1.47
23436618--23436733	34	3.5	34	83	4	121	49	6	0	43	1.33
23438248--23438275	13	2.2	13	100	0	56	53	0	0	46	1.00
23438077--23438595	177	3.0	177	92	4	817	46	6	10	36	1.63
23438261--23438595	167	2.0	164	95	2	600	46	6	10	36	1.64
23444217--23444330	57	2.0	57	100	0	228	33	12	12	42	1.80
23445679--23445729	26	2.0	26	84	7	68	49	1	0	49	1.12
23446860--23446901	22	1.9	22	85	9	59	28	4	23	42	1.74
23456286--23456325	21	2.0	20	85	14	55	47	12	12	27	1.77
23463021--23463063	17	2.5	17	80	3	50	69	2	0	27	1.00
23463078--23463107	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23474030--23474087	29	2.0	29	96	0	107	32	27	15	24	1.95
23475031--23475060	2	15.0	2	100	0	60	0	50	0	50	1.00
23475180--23475218	21	2.0	20	85	10	53	28	10	7	53	1.62
23477954--23478061	54	2.0	54	90	0	171	31	17	11	39	1.85
23484465--23484492	14	2.0	14	100	0	56	57	21	0	21	1.41
23491438--23491463	1	26.0	1	100	0	52	100	0	0	0	0.00
23493507--23493534	2	14.0	2	100	0	56	50	0	0	50	1.00
23497000--23497104	25	4.2	25	77	0	93	45	18	12	23	1.83
23497002--23497096	50	1.9	50	82	0	118	46	17	13	22	1.83
23502949--23502990	16	2.7	15	85	7	57	57	0	0	42	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133