genome.fa.s645.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  13  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3359218--3359276	25	2.6	23	84	12	77	45	5	3	45	1.42
3359218--3359287	25	3.0	24	78	18	67	42	4	5	47	1.47
3359339--3359374	2	17.5	2	94	5	63	47	0	2	50	1.15
3369688--3369722	3	11.7	3	93	0	61	65	2	0	31	1.07
3381158--3381195	17	2.2	17	86	9	51	71	7	2	18	1.23
3381166--3381190	13	1.9	13	100	0	50	80	4	0	16	0.87
3385368--3385396	12	2.3	13	94	5	51	24	3	0	72	1.00
3386042--3386112	20	3.5	20	78	18	58	45	2	0	52	1.15
3386895--3386954	26	2.3	26	85	0	75	33	6	18	41	1.76
3391702--3391765	22	2.9	21	79	9	65	53	4	4	37	1.43
3398513--3398551	20	2.0	20	84	0	51	41	2	10	46	1.51
3402002--3402033	2	16.0	2	100	0	64	0	50	0	50	1.00
3413810--3413860	26	1.9	27	88	4	77	52	0	1	45	1.12
3424129--3424168	20	2.0	20	100	0	80	35	20	10	35	1.86
3425445--3425486	11	3.8	11	87	0	66	28	0	21	50	1.49
3425542--3425666	51	2.4	53	79	2	137	44	7	16	32	1.75
3428562--3428588	2	13.5	2	100	0	54	51	0	0	48	1.00
3435437--3435483	20	2.4	20	79	10	53	61	0	0	38	0.96
3435503--3435590	42	2.0	44	85	8	119	50	1	1	47	1.16
3435541--3435579	18	2.1	19	86	13	55	46	0	2	51	1.14
3435742--3435783	17	2.5	17	80	7	50	33	0	2	64	1.07
3454920--3455004	42	2.0	42	97	0	161	43	8	11	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3465471--3465551	31	2.6	31	82	11	112	49	0	3	46	1.19
3465521--3465571	20	2.6	21	78	12	54	49	0	3	47	1.20
3474071--3474127	30	1.9	30	92	0	96	31	12	15	40	1.85
3476832--3476864	12	2.6	13	85	4	50	72	9	9	9	1.28
3480182--3480331	10	14.5	10	67	17	58	35	3	4	56	1.36
3480182--3480311	10	12.6	10	68	16	63	35	3	3	57	1.32
3480182--3480321	21	6.8	21	74	12	101	35	3	4	57	1.36
3480402--3480458	18	3.1	18	78	9	69	28	0	8	63	1.24
3480399--3480458	20	3.1	20	73	7	61	28	0	8	63	1.23
3480749--3480824	21	3.7	21	67	10	57	35	6	7	50	1.58
3480846--3480882	19	1.9	20	88	5	58	35	0	5	59	1.20
3480960--3481009	12	4.4	11	85	7	64	30	0	2	68	1.01
3480951--3481009	23	2.5	22	86	8	73	30	0	3	66	1.08
3487210--3487263	24	2.2	24	80	6	65	68	5	1	24	1.21
3488023--3488052	12	2.4	13	94	5	53	56	0	6	36	1.26
3489036--3489069	10	3.4	10	100	0	68	47	0	0	52	1.00
3489945--3489969	13	1.9	13	100	0	50	0	8	8	84	0.79
3494461--3494485	11	2.3	11	100	0	50	56	24	8	12	1.62
3497789--3497821	12	2.8	12	90	0	57	24	36	9	30	1.86
3500408--3500437	15	2.0	15	93	0	51	23	30	0	46	1.52
3500701--3500744	20	2.2	20	88	4	63	54	2	0	43	1.12
3505293--3505322	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3507396--3507433	18	2.1	18	90	0	58	26	0	2	71	1.00
3507969--3508012	20	2.3	19	84	4	52	20	0	22	56	1.42
3508586--3508637	15	3.1	18	78	18	67	34	5	9	50	1.59
3508626--3508682	11	4.9	11	75	16	53	26	1	7	64	1.28
3508621--3508682	23	2.7	24	82	9	76	25	3	8	62	1.38
3512320--3512446	60	2.1	60	94	0	218	32	14	15	37	1.89
3513304--3513341	19	2.0	19	90	10	60	78	0	10	10	0.95
3513304--3513347	20	2.2	20	88	4	63	77	2	9	11	1.08
3514874--3514965	44	2.1	42	82	11	107	34	9	13	42	1.77
3515026--3515243	52	4.2	52	78	7	183	33	10	14	42	1.79
3515159--3515300	50	2.8	50	80	6	142	35	9	13	40	1.78
3515254--3515328	35	2.1	35	85	0	96	36	10	8	45	1.68
3515337--3515384	25	1.9	25	86	0	69	47	12	6	33	1.66
3515355--3515424	36	1.9	36	82	5	88	41	17	7	34	1.76
3515402--3515437	18	1.9	19	94	5	65	36	16	11	36	1.84
3515398--3515480	18	4.5	18	74	18	64	33	12	10	43	1.77
3515477--3515559	17	5.2	16	74	20	66	38	10	12	38	1.78
3515476--3515549	17	4.5	17	73	21	68	39	12	13	35	1.82
3515501--3515543	7	5.9	7	80	20	52	44	11	11	32	1.77
3515516--3515540	13	1.9	13	100	0	50	48	8	16	28	1.74
3515501--3515558	30	2.0	29	89	3	89	41	10	12	36	1.76
3516705--3516746	20	2.1	20	86	0	57	14	0	11	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3517182--3517221	17	2.2	17	86	8	53	37	0	0	62	0.95
3517346--3517391	21	2.1	22	84	11	60	26	4	8	60	1.44
3517565--3517765	102	1.9	106	80	4	239	43	9	7	39	1.65
3528146--3528179	15	2.3	15	90	10	52	79	0	0	20	0.73
3545937--3546002	32	2.1	31	89	10	100	30	15	15	39	1.88
3547220--3547283	33	1.9	33	87	6	94	40	4	10	43	1.61
3548137--3548179	17	2.6	16	78	7	50	48	2	0	48	1.14
3548303--3548383	16	5.1	15	69	22	51	40	1	3	54	1.26
3548392--3548447	21	2.7	22	81	13	66	46	1	1	50	1.22
3548325--3548451	19	6.3	20	70	20	72	43	2	3	51	1.30
3548405--3548483	33	2.4	32	80	14	88	45	0	3	50	1.19
3549468--3549542	30	2.5	31	76	8	91	36	6	26	30	1.82
3549668--3549761	48	2.0	48	87	8	138	40	8	20	30	1.82
3554034--3554093	31	1.9	31	93	0	102	41	23	13	21	1.88
3564210--3564377	89	1.9	91	86	3	241	19	20	13	47	1.82
3572712--3572778	29	2.3	29	97	2	125	11	0	20	67	1.22
3572942--3572984	14	3.0	14	80	12	52	60	4	0	34	1.17
3572947--3573000	15	3.5	16	78	14	51	59	5	1	33	1.31
3573085--3573133	26	1.9	25	83	4	62	61	8	8	22	1.51
3579554--3579594	14	2.9	15	82	13	52	56	0	0	43	0.99
3593481--3593526	22	2.0	23	83	4	58	34	0	0	65	0.93
3595242--3595267	10	2.6	10	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3595365--3595847	134	3.6	133	78	4	357	28	13	19	39	1.89
3595508--3595847	133	2.5	132	81	5	362	27	12	20	39	1.88
3598710--3600692	662	3.0	662	98	0	3777	37	17	13	32	1.88
3606645--3606702	6	8.7	6	82	14	53	24	1	0	74	0.92
3606651--3606716	36	1.9	36	87	9	102	27	3	0	69	1.03
3606645--3606784	37	4.1	33	70	22	94	24	5	0	70	1.12
3606657--3606764	30	3.6	30	75	17	93	25	5	0	68	1.17
3606651--3606818	22	7.4	23	69	19	70	24	5	1	69	1.17
3606750--3606819	16	4.4	16	73	16	65	22	5	1	70	1.17
3606750--3606794	18	2.6	17	86	13	58	22	6	2	68	1.24
3606698--3606835	42	3.2	42	74	11	102	23	5	2	68	1.25
3606643--3606807	88	1.9	89	85	5	230	24	5	1	67	1.21
3607632--3607704	25	2.9	23	75	18	58	45	4	8	42	1.53
3614243--3614316	8	9.0	8	71	11	51	78	1	18	1	0.90
3614223--3614297	35	2.3	31	80	13	87	74	0	20	5	1.00
3614243--3614299	14	4.2	13	82	10	60	80	0	17	1	0.79
3614237--3614296	28	2.1	29	84	9	79	78	0	18	3	0.89
3614249--3614319	29	2.4	29	78	15	76	77	1	19	1	0.92
3616089--3616445	41	8.8	40	79	4	304	23	14	19	42	1.87
3616332--3616495	84	2.0	84	83	7	210	25	14	19	40	1.89
3616721--3616792	29	2.4	30	81	9	85	23	4	1	70	1.12
3616711--3616774	21	3.0	21	73	13	58	18	3	1	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3616756--3616855	23	4.4	22	72	17	62	23	7	1	69	1.19
3616781--3616883	17	6.6	16	68	26	62	23	6	0	68	1.19
3616761--3616881	43	2.8	43	74	16	110	23	7	0	67	1.21
3617607--3617656	4	12.2	4	79	12	57	20	2	0	78	0.86
3617611--3617659	9	5.7	9	81	13	59	20	2	0	77	0.87
3617612--3617656	13	3.5	13	90	3	74	20	2	0	77	0.87
3619420--3619456	18	2.1	18	89	0	56	21	0	24	54	1.45
3619330--3619574	80	3.1	80	89	1	359	20	8	26	44	1.79
3619399--3619531	40	3.3	40	67	15	112	20	9	27	43	1.81
3622003--3622058	20	2.8	20	81	10	62	26	7	3	62	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133