genome.fa.s645.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  74  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14590748--14590782	18	1.9	18	88	0	52	31	14	8	45	1.75
14590844--14590888	22	2.2	20	88	8	63	84	4	8	2	0.84
14591145--14591551	49	8.3	49	79	6	398	32	14	15	37	1.88
14591151--14591515	199	1.8	197	83	4	482	31	14	16	37	1.89
14592300--14592564	144	1.9	143	81	7	333	31	15	12	40	1.84
14594340--14594389	7	7.0	7	78	13	57	66	2	4	28	1.21
14594340--14594404	14	4.8	13	75	14	60	64	1	6	27	1.26
14594338--14594399	29	2.2	29	91	2	99	64	1	6	27	1.27
14597036--14597091	18	3.2	18	82	5	71	73	0	10	16	1.10
14599328--14599380	24	2.2	24	83	6	72	30	5	0	64	1.17
14601292--14601404	53	2.1	53	85	3	147	45	7	14	33	1.72
14601292--14601369	18	4.4	18	71	7	61	47	8	14	29	1.74
14601404--14601497	49	1.9	49	82	0	116	40	12	8	38	1.74
14601493--14601539	17	2.8	17	80	9	60	38	10	8	42	1.70
14601493--14601558	33	2.0	34	87	3	98	39	10	10	39	1.75
14602195--14602246	24	2.2	24	86	13	72	36	9	9	44	1.70
14605117--14605245	65	1.9	68	90	4	210	37	7	2	51	1.43
14609776--14610055	153	1.8	153	84	3	384	33	18	17	30	1.94
14610044--14610184	60	2.3	63	82	11	179	40	15	13	30	1.86
14610101--14610421	121	2.6	123	78	6	332	38	13	16	32	1.88
14610593--14610734	61	2.3	61	75	2	142	40	14	14	30	1.86
14610680--14611006	178	1.8	179	84	4	446	39	14	12	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14611039--14611213	59	2.9	59	80	9	169	45	11	16	27	1.81
14611539--14611606	34	2.0	34	85	0	91	27	17	11	42	1.84
14618086--14618133	19	2.5	20	78	18	57	68	6	18	6	1.32
14618756--14618823	35	1.9	35	87	0	100	35	2	17	44	1.64
14619525--14619584	30	2.0	30	87	6	86	26	16	3	53	1.59
14620747--14620779	15	2.1	16	88	5	50	63	9	9	18	1.49
14622352--14622376	13	1.9	13	100	0	50	28	40	8	24	1.83
14622692--14622733	21	2.0	20	95	4	75	45	14	14	26	1.83
14622694--14622746	10	5.2	10	75	4	52	45	16	11	26	1.82
14622696--14622746	20	2.5	21	87	3	68	45	17	11	25	1.83
14625916--14625969	25	2.2	25	93	0	90	53	5	12	27	1.61
14626268--14626657	49	8.1	49	71	12	227	31	14	13	40	1.84
14626281--14626742	97	4.8	96	74	12	340	31	14	13	40	1.85
14626534--14626791	50	5.2	50	76	9	217	32	12	10	43	1.78
14635908--14635992	44	1.9	44	90	4	136	35	27	15	22	1.94
14637485--14637540	3	18.3	3	92	7	87	30	0	0	69	0.89
14641556--14641618	19	3.3	18	78	8	63	82	4	9	3	0.92
14642644--14642971	86	3.8	85	78	1	289	32	18	12	35	1.88
14642890--14642947	17	3.4	17	77	15	66	31	12	18	37	1.88
14642655--14642967	172	1.8	171	84	3	423	32	18	12	36	1.88
14644482--14644526	23	2.0	23	86	8	65	28	6	0	64	1.19
14645454--14645500	17	2.7	17	80	9	51	12	8	8	70	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14645764--14645810	23	2.1	22	88	7	69	27	12	0	59	1.34
14645771--14645820	23	2.2	23	85	0	64	28	12	4	56	1.54
14647433--14647589	80	2.0	80	94	0	278	36	12	5	45	1.66
14647564--14647634	2	36.0	2	77	13	58	50	1	5	42	1.34
14647450--14647620	80	2.1	80	81	4	193	40	10	7	41	1.68
14650554--14650584	10	3.1	10	100	0	62	38	9	0	51	1.35
14655093--14655139	25	1.9	24	83	12	60	59	6	4	29	1.41
14654944--14655895	145	6.6	144	80	5	897	45	11	10	32	1.74
14658816--14658889	36	2.1	36	100	0	148	41	22	8	27	1.82
14661226--14661478	132	1.9	133	83	2	330	40	9	5	44	1.60
14667556--14668207	131	5.0	128	82	6	659	37	5	10	46	1.62
14667549--14668191	262	2.4	260	85	3	840	37	5	10	46	1.63
14669098--14669147	22	2.3	21	83	13	57	58	2	0	40	1.10
14669128--14669253	65	1.9	66	80	4	148	36	4	9	49	1.57
14669164--14669253	32	2.8	32	81	3	99	31	4	11	53	1.56
14673116--14673146	14	2.2	14	94	0	53	9	9	0	80	0.90
14674898--14674936	19	2.1	19	85	0	51	69	7	0	23	1.14
14675362--14675426	24	2.7	24	80	0	76	32	9	18	40	1.82
14686397--14687107	159	4.5	159	79	5	674	39	20	7	32	1.80
14686397--14687107	316	2.2	315	80	4	783	39	20	7	32	1.80
14688528--14688867	142	2.4	143	80	7	397	33	14	12	39	1.84
14688522--14688911	142	2.7	142	75	9	393	32	14	12	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14690316--14690394	7	12.1	7	77	17	64	45	32	1	20	1.59
14690291--14690367	19	4.1	19	77	9	77	44	32	2	20	1.66
14690291--14690387	38	2.6	38	83	3	115	44	34	2	19	1.63
14690319--14690418	12	8.0	12	71	16	62	48	33	3	16	1.61
14690318--14690378	19	3.2	19	81	11	79	49	29	1	19	1.58
14690318--14690386	19	3.6	19	80	3	77	47	31	1	18	1.58
14690398--14690443	19	2.4	20	82	10	60	54	30	4	10	1.55
14690331--14690455	19	6.6	19	68	15	55	50	32	3	14	1.59
14704394--14704599	103	2.0	103	91	0	331	28	18	15	37	1.91
14706764--14706856	29	3.1	29	62	27	66	38	10	16	34	1.83
14706732--14706856	62	2.0	62	98	0	241	40	11	14	33	1.81
14708642--14708717	39	1.9	39	97	0	143	47	11	7	32	1.69
14711795--14711819	13	1.9	13	100	0	50	68	0	16	16	1.22
14714141--14714176	16	2.1	18	90	10	58	69	25	0	5	1.10
14719427--14719557	45	2.8	45	86	4	154	31	12	3	52	1.56
14719965--14720007	22	2.0	22	81	9	52	46	16	2	34	1.60
14719884--14720045	82	2.0	83	90	2	254	48	12	6	33	1.66
14722540--14722578	17	2.4	17	91	4	62	35	23	10	30	1.88
14724266--14724300	17	2.0	18	88	5	54	37	5	20	37	1.76
14726499--14726541	3	14.3	3	80	0	50	9	0	23	67	1.19
14726501--14726598	6	16.3	6	92	0	106	22	0	10	67	1.20
14726528--14726600	3	24.3	3	91	0	119	28	0	4	67	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14727693--14727866	18	9.1	18	70	20	63	61	2	2	33	1.23
14727667--14727846	68	2.7	64	80	11	191	61	4	2	31	1.28
14727743--14727925	9	18.6	9	72	17	66	58	4	1	35	1.28
14727745--14727792	23	2.1	22	88	3	69	58	2	2	37	1.22
14727664--14728042	10	38.5	10	69	17	120	58	6	2	32	1.36
14727850--14727926	31	2.5	31	83	10	97	57	6	0	36	1.25
14728158--14728211	10	6.1	9	75	16	51	81	3	0	14	0.82
14728157--14728195	8	4.8	8	82	17	53	84	2	0	12	0.72
14728410--14728469	17	3.4	16	74	17	57	40	1	0	58	1.08
14728748--14728804	11	5.4	11	77	8	64	31	0	8	59	1.28
14728748--14728805	10	5.6	10	79	6	62	32	0	8	58	1.28
14728748--14728805	21	2.8	21	81	0	71	32	0	8	58	1.28
14731487--14731602	58	2.0	58	96	0	214	36	12	31	20	1.89
14737332--14737371	21	1.9	21	100	0	80	45	10	17	27	1.80
14746178--14746247	21	3.4	19	75	11	59	14	24	28	32	1.94
14747794--14747828	16	2.2	16	89	0	52	40	11	14	34	1.82
14752170--14752214	19	2.3	20	85	11	58	11	26	26	35	1.90
14755150--14755207	30	1.9	30	92	0	98	41	17	15	25	1.89
14756038--14756076	6	6.5	6	81	0	51	17	43	0	38	1.50
14756099--14756141	18	2.4	18	84	0	59	25	25	2	46	1.65
14759611--14759636	11	2.4	11	100	0	52	73	7	0	19	1.07
14762329--14762359	16	1.9	16	93	0	53	25	6	22	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14762381--14762429	21	2.5	20	83	9	64	20	2	4	73	1.10
14762363--14762435	38	1.9	38	86	5	103	20	4	5	69	1.25
14765289--14765554	136	2.0	136	97	0	505	45	6	15	31	1.73
14766563--14766729	90	1.9	90	88	2	255	39	13	7	39	1.73
14766714--14766755	13	3.2	13	100	0	84	50	7	7	35	1.57
14768388--14768436	21	2.3	21	86	6	64	16	4	4	75	1.11
14768932--14768994	25	2.4	27	79	12	69	71	7	3	17	1.23
14777443--14777479	8	4.2	9	90	10	51	67	5	0	27	1.12
14777907--14778041	69	2.0	69	89	0	207	36	14	19	30	1.91
14777905--14778058	69	2.2	69	83	3	193	37	14	17	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133