genome.fa.s645.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  60  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12368394--12368434	12	3.3	12	83	6	55	14	2	34	48	1.57
12371642--12371901	125	2.1	126	84	3	337	36	14	11	36	1.83
12371642--12371855	64	3.4	62	70	13	168	37	14	11	36	1.83
12371874--12371995	65	1.9	63	80	11	140	32	14	11	40	1.82
12373871--12373896	3	8.7	3	100	0	52	30	0	0	69	0.89
12373899--12373960	24	2.6	24	80	7	81	32	3	11	53	1.53
12373892--12373930	19	2.1	19	90	0	60	28	5	12	53	1.60
12374059--12374105	20	2.3	20	96	0	85	27	4	17	51	1.64
12374097--12374150	18	2.9	18	83	5	54	27	1	14	55	1.50
12374108--12374175	18	3.8	18	77	13	61	27	4	13	54	1.58
12377111--12377136	11	2.4	11	100	0	52	0	11	0	88	0.52
12377652--12377691	20	2.0	20	90	5	62	80	5	5	10	1.02
12377617--12377698	36	2.3	35	76	12	87	75	3	7	13	1.14
12378517--12378593	27	2.9	26	74	16	70	59	6	1	32	1.31
12378820--12378877	29	1.9	30	83	13	75	37	3	3	55	1.34
12383228--12383262	2	17.5	2	100	0	70	51	0	0	48	1.00
12383835--12383875	21	2.0	21	95	0	73	31	12	14	41	1.83
12390509--12390576	17	4.1	17	72	11	59	64	0	1	33	1.02
12390717--12390752	14	2.7	13	87	8	54	36	0	0	63	0.94
12390700--12390757	21	2.8	21	81	5	64	41	0	0	58	0.98
12391674--12391722	24	2.0	25	88	11	75	65	2	2	30	1.15
12391690--12391733	19	2.4	18	81	7	54	59	2	2	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12391886--12391934	7	7.0	7	85	0	62	63	2	0	34	1.06
12392318--12392363	16	2.9	16	75	18	51	67	8	13	10	1.42
12392533--12392568	18	2.0	18	89	10	56	11	8	2	77	1.08
12392754--12392825	18	3.9	17	72	13	54	36	2	8	52	1.46
12392813--12392861	18	2.7	19	84	15	68	24	2	4	69	1.17
12392813--12392868	26	2.2	26	83	0	67	23	1	3	71	1.11
12392793--12392861	35	2.0	35	83	11	88	26	1	5	66	1.22
12392822--12392877	26	2.2	26	86	0	76	21	1	1	75	0.99
12394062--12394113	24	2.2	24	81	18	65	44	0	1	53	1.11
12394054--12394111	24	2.6	21	73	19	55	43	0	1	55	1.10
12394069--12394124	25	2.2	26	78	15	64	44	3	1	50	1.29
12394879--12394915	12	3.1	12	84	0	56	64	0	0	35	0.94
12395183--12395229	17	2.8	17	87	3	60	53	2	0	44	1.12
12396363--12396424	27	2.3	27	86	8	72	72	1	17	8	1.17
12396531--12396580	25	2.0	25	84	4	64	78	6	8	8	1.11
12396659--12396729	17	4.3	16	74	13	56	63	1	0	35	1.03
12397272--12397315	19	2.3	19	84	0	52	81	4	4	9	0.96
12397780--12397833	12	4.4	12	79	11	56	70	1	1	25	1.07
12398366--12398415	22	2.2	22	82	3	64	50	0	0	50	1.00
12398350--12398469	20	6.3	20	63	22	53	53	0	0	45	1.06
12398411--12398468	24	2.5	21	77	22	55	60	0	0	39	0.97
12398413--12398455	14	2.9	14	89	6	59	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12404397--12404708	155	2.0	155	93	1	527	20	18	16	44	1.86
12406861--12406896	15	2.4	15	90	0	54	19	2	0	77	0.88
12407002--12407029	9	3.1	9	100	0	56	46	0	10	42	1.38
12408060--12408196	69	2.0	69	98	0	265	43	16	10	29	1.80
12410081--12410123	22	2.0	22	85	0	59	46	18	4	30	1.69
12411421--12411453	2	16.5	2	100	0	66	51	0	0	48	1.00
12424714--12424792	39	2.0	39	90	0	122	31	22	13	31	1.93
12428416--12428592	62	2.8	63	76	10	191	37	10	9	42	1.71
12428416--12428611	63	3.1	63	75	11	204	36	10	10	42	1.74
12432428--12432470	22	2.0	20	86	8	59	16	11	9	62	1.53
12433953--12434104	68	2.2	68	87	4	209	46	11	7	34	1.69
12439585--12439828	133	1.8	132	85	4	348	26	9	13	50	1.73
12441048--12441108	9	6.8	9	83	7	79	85	0	13	1	0.68
12441050--12441089	7	5.9	7	83	16	57	85	0	15	0	0.61
12442539--12442591	22	2.3	23	77	6	63	39	5	9	45	1.60
12442539--12442794	45	5.8	45	76	9	233	33	6	15	44	1.71
12442636--12442786	21	6.9	22	73	8	78	33	5	13	47	1.66
12442538--12442794	89	2.9	90	77	9	260	33	6	15	44	1.71
12442685--12442786	21	4.7	21	74	7	87	29	6	16	47	1.73
12442926--12443066	17	8.4	17	71	3	88	38	19	9	32	1.84
12442955--12443097	34	4.2	34	80	6	130	37	19	9	33	1.85
12443110--12443267	51	3.1	51	77	2	140	36	12	13	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12443357--12443411	16	3.2	17	73	19	60	27	16	21	34	1.95
12443339--12443420	18	4.7	18	70	20	57	26	15	21	35	1.94
12445747--12446089	151	2.3	151	84	3	440	35	17	16	30	1.92
12447934--12448006	33	2.2	33	95	0	128	31	26	15	27	1.95
12447866--12448115	101	2.4	105	86	6	330	36	19	12	32	1.89
12448036--12448110	39	1.9	39	94	0	132	29	21	14	34	1.93
12448567--12448613	18	2.6	18	96	0	85	40	6	25	27	1.80
12448747--12448836	41	2.2	40	84	7	119	35	11	20	33	1.88
12448843--12448894	26	2.0	26	85	7	70	30	13	15	40	1.86
12448821--12448935	58	2.0	58	94	0	203	29	13	17	40	1.87
12448818--12448917	32	3.3	31	72	21	104	28	13	17	42	1.86
12448906--12448988	42	2.0	41	85	2	112	32	8	22	36	1.85
12449061--12449256	67	3.0	65	78	5	205	27	16	20	34	1.95
12449061--12449291	65	3.5	64	75	5	194	26	16	21	35	1.95
12449049--12449322	34	8.3	33	69	10	157	27	16	21	35	1.94
12450151--12450223	6	11.5	6	73	16	58	2	17	1	78	0.95
12450199--12450247	18	2.7	17	78	12	53	4	12	2	81	0.91
12450192--12450239	14	3.4	14	79	2	51	4	12	2	81	0.93
12453089--12453140	8	6.5	8	90	0	86	42	0	32	25	1.55
12453089--12453142	4	13.5	4	84	0	72	44	0	31	24	1.54
12453089--12453142	16	3.4	16	97	0	99	44	0	31	24	1.54
12457849--12457879	5	6.2	5	100	0	62	22	58	19	0	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12458373--12458603	17	13.6	17	73	17	131	22	22	19	36	1.95
12458394--12458594	100	2.0	97	90	7	314	19	22	20	37	1.95
12458374--12458606	34	6.8	35	92	4	324	22	21	19	36	1.95
12458374--12458607	100	2.3	100	83	12	300	22	21	19	36	1.95
12462369--12462415	15	3.1	15	82	11	53	23	0	10	65	1.23
12463041--12463186	21	7.0	21	91	0	202	22	5	29	42	1.76
12463174--12463287	32	3.9	32	74	23	133	24	8	30	35	1.86
12463156--12463295	53	2.6	53	91	3	217	24	8	29	37	1.85
12463203--12463255	24	2.4	22	87	9	72	24	9	30	35	1.87
12463267--12463317	21	2.4	21	83	0	75	19	5	31	43	1.75
12466653--12466702	20	2.7	18	77	14	57	38	4	6	52	1.45
12469672--12469709	20	1.9	20	88	0	58	50	13	7	28	1.69
12472326--12472420	7	14.7	7	70	14	62	44	38	1	15	1.54
12472326--12472395	13	5.4	13	76	10	63	44	40	0	15	1.47
12472328--12472378	20	2.6	19	87	9	68	41	41	0	17	1.50
12472447--12472499	19	2.8	19	82	5	54	45	35	1	16	1.59
12472438--12472497	31	1.9	32	83	10	79	46	36	1	15	1.55
12478235--12478273	20	2.0	20	85	10	53	12	5	30	51	1.62
12481809--12481900	36	2.5	37	80	7	116	33	18	13	34	1.89
12483755--12483790	9	4.0	9	96	0	54	72	0	16	11	1.12
12483737--12483790	18	3.1	18	79	10	58	70	0	18	11	1.16
12483792--12483834	9	4.8	9	77	11	52	81	0	11	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12483771--12483830	13	4.6	13	72	13	52	78	0	13	8	0.96
12483780--12483834	27	2.1	26	86	3	74	80	0	12	7	0.91
12483770--12483838	27	3.0	22	71	20	59	76	0	14	8	1.00
12484965--12485005	7	5.9	7	91	0	64	17	12	24	46	1.82
12484966--12485005	21	1.9	21	94	0	71	17	10	25	47	1.78
12486546--12486742	35	5.5	35	72	7	137	29	16	13	40	1.86
12486724--12486878	48	3.2	48	65	10	127	35	12	10	41	1.78
12486714--12486902	96	2.0	96	92	0	315	34	12	11	40	1.80
12487274--12487368	34	2.8	34	76	12	97	23	14	20	42	1.89
12494158--12494191	12	3.0	12	91	8	54	5	5	0	88	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133