genome.fa.s645.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  67  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13382605--13385663	181	17.1	178	75	8	2158	40	8	10	41	1.69
13384237--13385674	360	4.0	360	76	8	1199	40	8	9	41	1.67
13385924--13386383	181	2.6	180	77	6	427	39	8	8	43	1.66
13386208--13386527	160	2.0	158	87	2	453	39	6	10	44	1.63
13386407--13386737	162	2.0	164	81	6	388	37	7	10	43	1.68
13386569--13387530	179	5.4	177	75	8	766	40	7	8	42	1.65
13387103--13387135	18	1.9	17	88	11	50	48	6	6	39	1.53
13387597--13396124	181	47.3	180	72	11	4637	39	8	10	41	1.68
13390220--13398950	361	24.5	358	74	9	5145	40	8	10	41	1.68
13390226--13398946	542	16.3	538	73	11	2507	40	8	10	41	1.68
13392708--13393764	180	6.0	169	72	12	537	40	7	9	42	1.67
13393733--13393790	26	2.2	27	84	9	84	46	8	10	34	1.69
13396349--13398971	181	14.6	180	73	10	1493	40	8	10	41	1.69
13397210--13397528	165	2.0	164	80	9	370	42	5	9	41	1.62
13396312--13405133	542	16.6	535	69	14	2419	40	8	10	40	1.68
13398715--13398747	16	2.0	17	88	5	50	42	3	12	42	1.57
13398979--13404654	181	31.6	180	75	7	3747	40	8	9	40	1.68
13400634--13400690	18	3.2	19	70	14	57	43	8	10	36	1.70
13400826--13400858	18	1.9	17	88	11	50	48	3	6	42	1.43
13399185--13409623	719	14.4	709	70	13	2828	40	8	9	41	1.68
13398979--13409623	361	29.4	359	70	12	3707	40	8	9	41	1.68
13403323--13403777	177	2.6	176	79	7	426	40	7	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13404511--13404786	151	1.8	150	80	6	333	39	7	14	38	1.75
13404803--13405119	169	1.9	169	82	5	399	39	6	11	42	1.68
13404217--13405136	501	1.8	505	80	5	1126	39	8	11	40	1.71
13405357--13409655	181	24.0	180	72	10	2358	39	8	9	41	1.68
13405906--13406223	162	2.0	161	84	7	418	39	8	9	43	1.66
13406139--13406171	15	2.3	15	89	5	50	24	0	0	75	0.80
13405509--13409200	541	6.9	530	72	13	1329	40	8	9	41	1.68
13406797--13406829	18	1.9	17	88	11	50	45	3	12	39	1.57
13407614--13409662	180	11.4	181	74	6	1258	39	8	9	42	1.68
13409510--13409554	18	2.6	17	86	10	56	44	0	8	46	1.34
13409747--13410652	180	5.0	179	73	11	498	38	8	10	42	1.70
13409747--13410545	180	4.4	180	75	8	505	38	8	11	42	1.71
13410556--13410597	18	2.4	17	80	11	50	38	2	14	45	1.58
13410648--13410975	182	1.8	182	84	1	451	39	9	11	39	1.74
13410995--13414345	360	9.4	358	75	8	2319	41	10	8	40	1.69
13411003--13414345	181	18.7	180	74	8	2242	41	10	8	40	1.69
13416029--13417541	465	3.3	453	80	9	1529	40	16	11	31	1.84
13417442--13417666	125	1.8	125	88	1	344	37	16	13	32	1.88
13416977--13418149	592	2.0	581	84	5	1519	39	17	12	31	1.86
13417916--13418868	439	2.2	442	93	2	1645	39	17	11	32	1.84
13419147--13419408	128	2.1	125	83	3	319	37	17	14	30	1.90
13418870--13420488	604	2.7	603	91	2	2494	39	17	11	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13421250--13421511	128	2.1	125	83	3	319	37	17	14	30	1.90
13423960--13424017	30	1.9	29	83	13	73	48	3	1	46	1.29
13424120--13424745	181	3.5	179	80	4	650	40	8	11	39	1.72
13424285--13425225	483	2.0	479	81	3	1120	41	9	11	37	1.72
13424771--13425413	181	3.5	180	79	4	652	43	8	9	38	1.69
13425377--13425409	18	1.9	17	88	11	50	48	6	6	39	1.53
13424120--13425409	664	1.9	662	81	4	1524	41	8	10	38	1.71
13425372--13425418	19	2.7	18	80	12	62	44	4	10	40	1.59
13425443--13428144	181	15.1	180	75	8	1807	41	9	7	40	1.67
13425443--13428153	356	7.6	356	75	7	1802	41	9	7	40	1.67
13426829--13426861	18	1.9	17	88	11	50	36	9	6	48	1.60
13425472--13428129	531	4.9	531	76	7	1857	41	9	7	40	1.67
13428548--13428580	17	2.1	16	88	11	50	66	0	0	33	0.92
13428880--13428929	14	3.2	16	81	18	61	46	2	0	52	1.12
13429639--13430270	181	3.5	179	78	8	593	39	8	9	42	1.67
13430269--13430312	14	3.1	14	81	12	54	54	0	0	45	0.99
13430269--13430326	28	2.0	29	83	9	75	48	0	0	51	1.00
13430563--13431074	183	2.8	179	80	6	536	41	9	8	40	1.68
13433440--13434988	180	8.5	174	73	13	775	42	9	8	39	1.66
13434225--13434921	183	3.9	178	76	10	571	43	10	7	39	1.67
13435026--13435065	15	2.6	16	88	4	55	57	2	0	40	1.12
13435175--13435236	28	2.3	27	79	20	67	45	1	0	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13435327--13435395	18	3.7	18	72	14	59	49	4	0	46	1.21
13437040--13437088	26	2.0	25	88	8	73	20	16	8	55	1.66
13436727--13437271	279	2.0	278	94	1	957	29	14	10	44	1.79
13437371--13437413	22	2.0	22	90	0	68	46	9	11	32	1.72
13437784--13437811	13	2.2	13	100	0	56	53	0	0	46	1.00
13438048--13438222	92	1.9	92	82	2	217	33	10	11	45	1.74
13438877--13438937	19	3.3	19	80	13	65	55	1	0	42	1.09
13438888--13438945	24	2.4	24	82	2	71	55	1	0	43	1.10
13438900--13438946	20	2.4	19	85	3	58	57	0	0	42	0.98
13439067--13439091	13	1.9	13	100	0	50	40	8	0	52	1.31
13439888--13440291	181	2.2	180	79	4	431	42	9	8	39	1.68
13440561--13440615	22	2.4	22	84	9	65	52	1	3	41	1.29
13440576--13440622	22	2.1	22	92	0	76	51	2	2	44	1.25
13440585--13440654	22	3.2	22	82	9	81	45	0	2	51	1.16
13440714--13440768	22	2.4	24	82	11	62	49	3	1	45	1.30
13440882--13442117	181	6.9	180	76	6	1008	40	7	10	41	1.67
13440882--13442081	361	3.3	358	78	7	996	40	7	10	41	1.67
13441864--13441900	17	2.1	18	85	14	51	37	2	10	48	1.52
13442132--13442753	182	3.5	182	79	6	662	39	7	9	44	1.64
13442136--13442849	360	2.0	356	79	4	774	39	7	9	42	1.67
13443020--13443056	19	1.9	19	88	0	56	43	0	0	56	0.99
13443165--13443242	21	3.8	21	70	21	58	39	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13443221--13443293	13	6.0	13	70	15	57	46	2	0	50	1.15
13443210--13443287	25	3.3	24	69	16	65	46	2	0	51	1.14
13443207--13443270	19	3.4	19	76	20	62	46	1	0	51	1.10
13443214--13443259	22	2.1	21	84	4	56	50	0	0	50	1.00
13444211--13444249	12	3.3	12	85	3	53	48	2	0	48	1.15
13444284--13444327	23	2.0	22	95	4	79	45	0	0	54	0.99
13445202--13445439	120	2.0	120	85	4	320	34	12	8	44	1.72
13446741--13446771	16	1.9	16	100	0	62	58	6	6	29	1.48
13446826--13446900	33	2.2	33	81	11	82	42	2	2	52	1.29
13447060--13447100	20	2.1	19	86	13	57	56	4	4	34	1.42
13447066--13447109	20	2.1	21	83	4	54	50	9	4	36	1.55
13447499--13448082	322	1.8	324	82	3	766	42	8	9	39	1.68
13447825--13448795	181	5.4	178	78	7	832	40	7	10	41	1.68
13448798--13448846	18	2.7	19	75	9	57	55	2	2	40	1.23
13448802--13448830	14	2.0	15	93	6	51	58	0	0	41	0.98
13448798--13448859	25	2.5	24	78	14	72	53	1	1	43	1.20
13448803--13448846	22	2.0	22	82	8	54	56	2	2	38	1.24
13448798--13448868	13	5.6	13	67	23	53	52	2	1	43	1.24
13448849--13448888	21	1.9	21	89	0	62	50	5	0	45	1.23
13449161--13449469	169	1.8	167	82	2	395	41	6	10	41	1.64
13449330--13451529	181	12.2	180	76	7	1782	40	9	9	40	1.70
13449574--13449901	171	1.9	171	82	7	414	37	10	10	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13449047--13451537	362	7.0	360	76	8	1918	40	9	10	40	1.70
13451600--13451655	26	2.3	23	79	11	58	48	1	5	44	1.36
13458472--13458525	21	2.6	21	93	0	90	25	22	35	16	1.95
13461538--13462524	369	2.7	368	89	1	1492	19	31	22	26	1.98
13463508--13463575	19	3.4	19	80	11	66	48	1	0	50	1.10
13463522--13463585	22	3.0	22	72	17	55	50	0	0	50	1.00
13463742--13463802	20	3.1	19	77	17	54	47	0	3	49	1.18
13463752--13463807	14	3.7	15	75	13	53	46	0	1	51	1.11
13463748--13463807	19	3.1	19	79	11	61	46	0	1	51	1.10
13463781--13463825	22	2.0	23	83	12	58	42	0	2	55	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133