genome.fa.s645.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  64  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13031650--13031691	21	2.0	21	100	0	84	33	23	9	33	1.87
13033897--13033998	50	2.1	49	88	1	150	48	13	2	35	1.58
13034510--13034566	20	2.9	20	78	19	66	56	10	3	29	1.50
13036054--13036115	27	2.3	26	81	10	63	70	6	1	20	1.17
13036534--13036738	74	2.8	73	77	7	216	42	18	9	28	1.82
13036572--13036738	36	4.5	38	78	6	137	43	18	8	28	1.80
13036580--13036704	36	3.4	36	81	7	144	43	18	10	28	1.83
13038388--13038438	24	2.1	24	85	0	66	3	11	3	80	0.98
13038360--13038440	40	2.0	40	85	7	110	4	13	4	76	1.11
13038902--13039063	35	4.6	35	75	14	136	51	11	19	16	1.75
13038860--13039021	69	2.3	69	78	5	173	51	11	19	17	1.75
13038961--13039059	37	2.8	36	80	10	96	53	13	19	14	1.72
13039111--13039152	22	1.9	22	95	0	75	16	26	28	28	1.97
13039141--13039218	32	2.5	30	81	10	86	34	14	20	30	1.92
13039761--13039862	3	33.3	3	80	7	107	28	2	4	63	1.29
13039919--13039953	11	3.0	12	83	8	54	11	5	0	82	0.82
13039917--13039952	12	3.1	12	84	8	56	13	5	0	80	0.88
13040772--13040803	11	2.8	12	86	13	50	21	3	0	75	0.95
13040771--13040832	28	2.2	28	91	2	99	22	3	0	74	0.96
13040772--13040851	12	6.5	12	67	24	51	25	2	2	70	1.13
13040771--13040847	27	2.8	28	86	3	86	24	2	2	70	1.13
13041164--13041261	40	2.5	37	81	13	117	41	17	13	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13041188--13041264	40	1.9	40	94	0	136	40	16	15	27	1.89
13052225--13052381	59	2.7	59	83	5	167	18	21	15	44	1.86
13052778--13052914	3	45.3	3	82	4	132	28	1	7	62	1.30
13053707--13053764	20	2.8	20	80	16	66	18	5	1	74	1.10
13053714--13053779	7	9.6	7	76	17	50	19	3	3	74	1.09
13053716--13053784	20	3.4	19	73	25	61	18	2	2	75	1.06
13053759--13053807	17	2.8	18	78	12	57	18	4	4	73	1.15
13053751--13053815	28	2.4	26	84	5	76	18	3	3	75	1.07
13053750--13053815	14	4.5	14	71	16	53	18	3	3	75	1.06
13053767--13053829	28	2.3	28	80	2	74	23	3	4	68	1.24
13055220--13055288	25	2.8	25	90	0	102	5	30	0	63	1.17
13059788--13059819	16	2.0	16	93	0	55	0	0	9	90	0.45
13060630--13060700	35	2.0	35	83	0	88	30	7	16	45	1.75
13061683--13061758	14	5.6	13	84	7	82	19	2	27	50	1.61
13061683--13061762	41	2.0	41	85	9	110	21	2	27	48	1.63
13061683--13061801	27	4.5	26	75	13	100	21	4	26	47	1.69
13061860--13061907	13	3.6	13	86	5	60	18	2	25	54	1.55
13062007--13062039	14	2.4	14	90	10	50	27	3	0	69	1.03
13064634--13064658	8	3.1	8	100	0	50	0	12	12	76	1.04
13078463--13078510	10	4.6	10	76	7	51	16	6	0	77	0.97
13078618--13078674	24	2.3	24	96	3	105	49	10	3	36	1.55
13078667--13078706	21	1.9	21	84	0	53	60	2	2	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13079885--13080113	47	4.8	47	81	6	237	37	21	12	29	1.90
13079885--13080124	96	2.5	96	86	3	322	36	21	11	30	1.89
13092947--13093087	73	2.0	71	88	2	210	57	2	8	31	1.41
13097080--13097260	63	2.9	63	88	3	249	38	8	7	45	1.63
13099873--13099933	24	2.5	23	82	10	68	4	14	3	77	1.07
13100287--13100702	145	2.9	145	80	3	471	41	13	13	31	1.82
13101228--13101491	73	3.6	73	77	3	185	55	14	14	15	1.70
13101227--13101441	38	5.9	36	70	7	112	56	13	14	16	1.68
13101391--13101548	38	4.3	38	76	9	121	55	15	15	12	1.69
13101429--13101545	36	3.2	37	79	13	127	55	16	15	12	1.69
13101524--13101620	36	2.7	36	80	0	113	57	13	11	17	1.64
13102638--13102906	137	2.0	137	86	2	380	20	19	10	49	1.76
13102900--13102940	18	2.3	18	86	0	55	9	2	7	80	0.99
13102766--13103077	171	1.8	168	81	8	389	20	16	10	53	1.71
13103069--13103118	24	2.1	24	85	3	66	6	4	6	84	0.88
13103067--13103132	14	4.9	13	75	20	57	6	7	4	81	0.97
13105793--13105927	63	2.1	63	81	8	150	35	20	18	25	1.95
13106655--13106683	14	2.1	14	100	0	58	20	24	13	41	1.89
13106983--13107380	145	2.7	144	82	5	437	41	11	14	32	1.82
13107984--13108079	38	2.5	38	82	0	111	58	15	10	15	1.63
13107957--13108886	36	25.4	36	69	9	285	53	14	16	15	1.74
13108511--13108669	80	2.0	80	86	2	221	53	17	15	13	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13108834--13108886	17	3.1	16	75	15	52	62	3	15	18	1.47
13110768--13110815	8	6.6	8	75	20	52	0	16	0	83	0.65
13110757--13110807	21	2.4	21	81	9	59	1	17	0	80	0.81
13110776--13110816	13	3.1	14	83	16	52	0	14	0	85	0.60
13110757--13110816	28	2.2	27	87	3	84	1	16	0	81	0.77
13110757--13110814	20	2.7	21	84	7	73	1	17	0	81	0.78
13114789--13114838	18	2.9	17	80	13	66	0	20	0	80	0.72
13114791--13114839	19	2.7	19	81	6	66	0	18	0	81	0.69
13117168--13117323	63	2.5	62	80	5	152	37	19	19	22	1.94
13118305--13118791	145	3.4	144	83	1	600	39	11	15	32	1.84
13118986--13119025	10	4.0	10	83	0	53	17	10	17	55	1.69
13118986--13119023	20	1.9	20	94	0	67	18	10	18	52	1.73
13125012--13125221	112	1.9	112	90	0	339	40	9	16	33	1.81
13126103--13126136	17	1.9	18	88	5	52	52	11	2	32	1.53
13128812--13128845	16	2.0	18	88	11	54	58	11	17	11	1.62
13130002--13130084	30	2.8	28	74	18	71	53	0	0	46	1.00
13130300--13130346	24	1.9	24	82	4	58	31	2	6	59	1.34
13130362--13130386	11	2.3	11	100	0	50	52	0	0	48	1.00
13130413--13130438	5	5.2	5	100	0	52	19	0	0	80	0.71
13132502--13132548	17	2.8	17	75	12	51	19	14	8	57	1.63
13136970--13137041	35	2.1	35	97	0	135	36	2	19	41	1.66
13138077--13138113	16	2.2	18	85	9	51	24	13	5	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13145822--13146036	104	2.1	104	100	0	430	45	15	6	33	1.70
13155528--13155904	208	1.8	207	88	2	587	44	16	21	17	1.87
13157648--13157693	3	15.3	3	95	0	83	30	2	0	67	1.03
13158167--13158204	15	2.4	16	86	4	51	73	0	15	10	1.09
13160742--13160822	39	2.1	39	95	4	146	43	17	4	34	1.70
13162000--13162034	16	2.2	16	100	0	70	8	37	5	48	1.58
13163067--13163200	55	2.4	55	81	4	144	29	11	11	46	1.77
13175894--13177337	181	8.1	179	75	8	1064	38	8	10	41	1.70
13175894--13177229	531	2.5	537	80	7	1508	38	8	10	42	1.70
13177218--13177493	144	1.9	145	84	7	373	40	6	10	41	1.67
13176708--13178018	687	1.9	677	79	6	1441	40	7	10	41	1.68
13177359--13181267	181	21.7	178	74	9	2563	40	8	9	41	1.67
13178578--13178610	18	1.9	17	88	11	50	48	6	6	39	1.53
13177365--13181256	544	7.2	543	73	10	1307	40	8	9	42	1.67
13181238--13181292	25	2.2	25	93	0	92	47	7	16	29	1.73
13181755--13182172	157	2.7	157	91	1	649	44	6	11	38	1.67
13182487--13182819	176	1.9	177	84	5	447	38	9	10	41	1.72
13182541--13183129	176	3.3	173	75	9	513	38	8	8	43	1.67
13183131--13183175	21	2.1	21	87	4	63	22	11	4	62	1.46
13183210--13184279	180	6.0	177	75	8	767	40	9	9	40	1.69
13183275--13184266	359	2.8	354	79	6	966	40	9	8	41	1.67
13184026--13184539	267	1.9	266	82	4	642	41	9	5	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13184293--13186337	180	11.4	180	74	7	1292	40	7	9	42	1.66
13184282--13187120	538	5.3	535	75	9	1902	40	7	9	42	1.67
13185028--13185888	358	2.4	358	78	5	839	40	8	9	41	1.68
13185370--13186041	358	1.9	359	80	4	782	39	7	9	43	1.66
13186358--13187122	181	4.2	181	79	5	807	38	7	10	42	1.69
13187194--13188863	181	9.4	180	78	7	1368	40	8	10	40	1.70
13187762--13187810	16	2.8	18	72	15	57	44	10	8	36	1.68
13187219--13188702	181	8.2	181	80	5	1370	40	8	10	41	1.69
13188815--13188957	49	3.0	48	86	4	189	51	6	10	30	1.62
13189255--13190556	180	7.3	178	75	9	468	40	7	11	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133