genome.fa.s645.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  123  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23677599--23677631	2	16.5	2	93	0	57	51	0	0	48	1.00
23679716--23679775	3	20.0	3	100	0	120	66	0	0	33	0.92
23681980--23682011	3	10.7	3	100	0	64	65	0	0	34	0.93
23682426--23682455	2	15.0	2	92	0	51	50	0	3	46	1.18
23684038--23684078	2	20.5	2	89	0	64	51	0	43	4	1.23
23685378--23685410	16	2.1	16	94	0	57	45	6	36	12	1.66
23692301--23692331	14	2.1	15	94	5	55	58	0	0	41	0.98
23692995--23693055	29	2.1	30	87	3	88	40	1	9	47	1.46
23693028--23693072	23	1.9	24	86	4	65	37	2	4	55	1.32
23693929--23693953	1	25.0	1	100	0	50	100	0	0	0	0.00
23699454--23699502	11	4.6	11	73	19	50	28	0	2	69	1.00
23699656--23699701	15	3.1	15	78	6	58	63	10	0	26	1.27
23699686--23699726	20	2.0	21	90	4	66	60	19	4	14	1.51
23701822--23701862	22	2.0	22	85	9	59	68	0	0	31	0.90
23706363--23706408	22	2.1	22	84	8	58	23	2	6	67	1.25
23714081--23714118	6	6.7	6	85	8	53	86	2	0	10	0.66
23714080--23714118	11	3.6	10	81	18	51	87	2	0	10	0.65
23714047--23714115	12	5.2	12	75	19	50	76	4	1	17	1.02
23714080--23714119	17	2.4	16	88	8	62	85	5	0	10	0.75
23714840--23714869	15	2.0	15	93	0	51	83	0	0	16	0.65
23714865--23714904	17	2.3	18	91	4	64	65	7	2	25	1.32
23716463--23716502	21	1.9	21	85	10	55	2	40	5	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23718004--23718064	30	2.0	30	96	0	113	34	8	14	42	1.76
23718248--23718290	24	1.9	23	86	13	63	32	0	6	60	1.23
23718351--23718425	6	12.3	6	74	17	57	65	0	0	34	0.93
23718350--23718419	25	2.9	25	81	6	83	65	0	0	34	0.93
23718352--23718410	29	2.0	29	83	6	75	66	0	0	33	0.92
23719050--23719098	20	2.3	21	82	13	64	57	0	2	40	1.10
23719753--23719871	36	3.3	36	96	0	211	33	21	13	31	1.92
23719882--23719933	21	2.5	21	90	6	79	50	0	0	50	1.00
23719882--23719933	22	2.5	22	93	6	90	50	0	0	50	1.00
23719906--23719962	30	1.9	30	85	0	78	52	1	0	45	1.11
23720688--23720716	8	3.6	8	100	0	58	48	0	0	51	1.00
23723715--23723748	13	2.6	13	90	0	50	73	0	2	23	0.97
23723716--23723750	17	2.0	18	88	5	54	71	0	2	25	1.00
23725644--23725944	55	5.3	54	79	12	300	45	5	9	38	1.61
23726959--23727190	22	10.6	22	69	10	84	50	6	7	35	1.57
23727303--23727383	22	3.9	19	73	13	63	48	6	8	37	1.59
23727336--23727420	22	3.9	22	80	6	91	49	9	7	34	1.62
23727336--23727422	44	2.0	44	86	0	120	49	9	6	34	1.61
23727528--23727574	22	2.2	22	88	3	69	40	8	6	44	1.60
23727535--23727582	22	2.2	22	81	7	53	41	12	6	39	1.68
23727579--23727657	22	3.6	21	79	3	59	46	6	8	37	1.60
23727601--23727661	22	2.8	22	84	0	77	44	8	9	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23727945--23728330	22	17.5	22	66	11	67	48	5	9	36	1.59
23727953--23727995	11	3.9	11	81	0	50	55	4	2	37	1.33
23728001--23728116	44	2.7	43	81	6	128	49	3	7	39	1.49
23727931--23728120	67	2.9	65	75	12	174	47	4	7	40	1.52
23728131--23728180	21	2.3	22	83	10	68	46	4	10	40	1.56
23728290--23728343	21	2.5	22	84	3	74	46	3	11	38	1.57
23728317--23728373	30	1.9	30	82	13	73	40	3	14	42	1.62
23728414--23728539	22	5.8	22	78	5	96	46	6	7	38	1.59
23728423--23728626	44	4.7	44	75	8	166	45	7	8	38	1.63
23728450--23728607	22	7.2	22	73	7	90	46	7	8	37	1.62
23728935--23728997	21	3.0	20	80	11	65	46	9	7	36	1.66
23729001--23729111	48	2.3	47	83	4	134	49	10	2	36	1.52
23731796--23731969	30	5.8	30	87	4	244	17	33	8	41	1.78
23735545--23735609	27	2.4	24	75	22	58	33	18	7	40	1.79
23744127--23744210	30	2.8	30	76	18	93	33	7	5	53	1.52
23752262--23752303	22	1.9	22	85	9	59	69	7	0	23	1.13
23758419--23758453	18	1.9	18	100	0	70	40	11	11	37	1.77
23759345--23759369	12	2.1	12	100	0	50	44	0	16	40	1.47
23768850--23768879	16	1.9	16	93	6	53	0	36	0	63	0.95
23776516--23776550	15	2.3	15	95	0	61	37	17	17	28	1.92
23780902--23780930	12	2.3	13	94	5	51	31	41	0	27	1.56
23782242--23782291	21	2.4	21	93	0	82	32	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23783730--23783782	21	2.5	21	75	0	61	39	18	11	30	1.86
23783786--23783839	21	2.6	21	84	0	72	31	20	14	33	1.93
23788221--23788931	237	3.0	237	100	0	1422	28	13	25	32	1.94
23791462--23791511	25	2.0	25	92	0	82	32	32	4	32	1.76
23792269--23792518	111	2.2	114	85	4	337	46	5	11	37	1.63
23793367--23793445	34	2.3	34	84	0	104	32	17	7	41	1.78
23794794--23795068	111	2.5	112	73	4	252	45	6	10	37	1.65
23795410--23795468	24	2.4	24	80	2	64	32	11	10	45	1.74
23798627--23798687	31	2.0	31	83	0	77	42	11	3	42	1.57
23799485--23799654	88	1.9	89	89	3	263	31	11	18	38	1.86
23804234--23804275	18	2.3	19	87	4	59	50	9	7	33	1.62
23804790--23804838	12	3.8	12	78	19	53	44	0	0	55	0.99
23804786--23804846	28	2.2	28	90	0	104	49	0	0	50	1.00
23810214--23810289	32	2.4	31	82	2	89	47	3	3	44	1.40
23810927--23810961	7	5.0	7	100	0	70	14	42	14	28	1.84
23815369--23815425	13	4.6	13	72	26	52	31	1	0	66	1.02
23815365--23815425	23	2.5	24	78	10	70	31	1	0	67	1.01
23815423--23815488	21	3.0	23	80	17	95	45	0	0	54	0.99
23819048--23819106	30	2.0	30	89	0	91	40	18	18	22	1.91
23822105--23822379	131	2.1	132	88	1	408	43	7	4	44	1.53
23830376--23830407	2	16.5	2	93	6	57	50	0	0	50	1.00
23838438--23838595	81	2.0	81	86	5	221	36	6	12	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23845798--23845872	39	1.9	39	94	0	132	29	24	10	36	1.89
23846986--23847090	28	3.8	28	90	0	165	21	0	32	45	1.52
23851319--23851395	28	2.8	28	95	0	136	18	0	35	46	1.49
23856462--23856515	27	2.0	28	85	3	74	44	7	27	20	1.78
23856957--23857206	133	1.9	133	82	1	313	22	21	16	39	1.92
23866344--23866388	17	2.4	19	89	10	67	0	4	6	88	0.61
23866699--23866792	18	5.1	18	87	7	107	19	1	69	10	1.24
23866699--23866772	6	12.3	6	98	0	130	18	0	67	13	1.23
23877850--23877874	12	2.1	12	100	0	50	32	16	16	36	1.90
23883835--23883901	25	2.8	24	78	13	66	56	0	0	43	0.99
23883876--23883935	30	2.0	31	86	3	86	50	1	1	46	1.21
23888210--23888287	24	3.3	24	81	10	65	62	0	0	37	0.95
23888229--23888287	22	2.5	24	81	10	70	61	0	0	38	0.96
23890749--23890781	17	2.0	16	94	5	57	33	0	0	66	0.92
23891548--23891633	32	2.8	31	79	10	97	51	0	3	45	1.18
23902066--23902106	20	2.0	20	85	0	55	36	0	0	63	0.95
23902185--23902253	30	2.3	31	79	2	77	55	8	1	34	1.40
23905761--23905853	25	3.5	26	73	18	84	47	2	49	1	1.20
23915705--23915752	21	2.3	21	82	7	62	45	10	2	41	1.50
23916069--23916107	20	1.9	20	84	5	51	38	0	2	58	1.12
23917844--23917887	18	2.4	18	81	11	54	29	11	9	50	1.69
23918470--23918540	33	2.2	32	85	7	90	26	5	12	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23918616--23918664	24	2.0	24	84	4	62	32	6	12	48	1.65
23920521--23920554	17	1.9	18	88	5	52	20	11	11	55	1.67
23922219--23922268	24	2.1	24	96	0	91	30	12	10	48	1.73
23935261--23935306	13	3.5	13	88	5	67	67	6	0	26	1.15
23935330--23935370	21	2.0	21	85	0	55	53	0	4	41	1.22
23935356--23935392	14	2.8	14	84	8	51	37	0	10	51	1.37
23940556--23940582	8	3.4	8	100	0	54	33	0	0	66	0.92
23940620--23940644	13	1.9	13	100	0	50	64	0	0	36	0.94
23940775--23940826	26	2.0	26	88	3	77	42	0	7	50	1.31
23940965--23941080	39	3.0	39	64	22	98	47	0	3	48	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133