genome.fa.s645.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  97  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18831844--18831936	21	4.6	20	73	16	66	78	2	13	5	1.02
18832616--18832944	175	1.9	175	80	6	389	20	23	13	42	1.88
18832743--18833235	242	2.0	241	80	3	537	20	24	12	41	1.88
18832767--18833641	120	7.3	120	73	10	461	20	25	13	41	1.88
18833820--18833871	24	2.1	23	82	10	59	36	5	7	50	1.55
18833831--18834011	9	22.0	8	73	14	104	37	3	3	55	1.35
18833942--18834008	3	22.7	3	95	3	118	34	1	0	64	1.03
18835766--18835816	24	2.2	24	80	16	63	39	7	1	50	1.42
18835929--18835991	24	2.6	24	72	22	60	55	1	1	41	1.19
18838574--18838951	197	1.9	195	90	2	596	37	13	10	38	1.80
18839016--18839045	12	2.5	12	94	0	51	30	0	0	70	0.88
18839080--18839465	205	1.9	206	81	6	480	33	13	6	46	1.70
18839423--18839481	26	2.2	27	82	8	68	28	1	3	66	1.18
18840522--18840586	20	3.4	20	65	23	50	67	4	26	1	1.18
18840784--18841329	45	11.9	45	95	3	925	35	26	13	25	1.93
18840784--18841329	92	5.9	92	94	4	944	35	26	13	25	1.93
18840784--18841329	185	3.0	185	95	2	971	35	26	13	25	1.93
18843186--18843228	21	2.0	21	95	0	77	32	46	4	16	1.67
18845662--18845705	14	3.2	13	84	12	52	65	0	22	11	1.24
18845647--18845717	28	2.6	27	77	18	67	64	1	21	12	1.34
18850754--18850813	13	4.2	14	78	17	61	3	1	8	86	0.74
18850754--18850813	9	6.3	10	79	9	63	3	1	8	86	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18850781--18850823	18	2.4	18	80	0	50	2	6	6	83	0.88
18851290--18851668	196	1.9	195	94	1	661	37	14	11	36	1.82
18851733--18851762	12	2.5	12	94	0	51	30	0	0	70	0.88
18851803--18852182	205	1.8	206	83	7	513	33	13	6	46	1.69
18852548--18852617	27	2.6	27	95	0	131	18	24	21	35	1.95
18864108--18864156	20	2.3	20	89	6	71	40	0	2	57	1.10
18865582--18865621	21	2.0	21	86	13	59	57	0	0	42	0.98
18867449--18867487	21	1.9	20	84	5	51	46	0	10	43	1.37
18869880--18869981	48	2.1	47	83	5	134	26	6	8	57	1.54
18873275--18873315	2	21.0	2	95	5	75	51	0	0	48	1.00
18875307--18875331	13	1.9	13	100	0	50	28	0	24	48	1.52
18876717--18876759	13	3.2	13	79	20	52	27	0	0	72	0.85
18876717--18876776	16	3.9	16	83	12	65	30	0	0	70	0.88
18876709--18876778	36	1.9	36	83	11	90	30	0	0	70	0.88
18877137--18877235	34	2.9	34	87	3	137	50	11	20	18	1.76
18877182--18877819	171	3.7	171	88	3	867	45	13	19	20	1.84
18877846--18878049	39	5.4	39	73	11	167	47	14	19	19	1.83
18877806--18878084	149	1.9	148	90	0	441	46	14	20	18	1.84
18879116--18879172	1	57.0	1	75	0	51	1	5	5	87	0.72
18879116--18879159	16	2.8	16	89	3	63	2	2	6	88	0.67
18891963--18892018	27	2.1	26	84	15	71	35	0	0	64	0.94
18891957--18892006	25	2.1	24	85	7	66	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18893001--18893026	2	13.0	2	100	0	52	50	0	0	50	1.00
18900273--18900307	2	18.0	2	88	5	54	45	0	0	54	0.99
18901352--18901431	36	2.3	34	81	14	83	27	3	1	67	1.15
18901308--18901431	12	10.1	12	68	17	60	25	5	2	66	1.26
18901306--18901429	6	20.2	6	67	21	53	26	5	2	65	1.27
18906035--18906085	17	3.1	17	81	13	61	33	0	0	66	0.92
18906296--18906321	13	2.0	13	100	0	52	23	7	15	53	1.67
18906302--18906367	33	2.0	34	84	3	89	19	6	25	48	1.72
18906315--18906359	20	2.2	20	84	0	54	20	6	26	46	1.75
18906324--18906415	47	2.0	46	84	2	121	18	3	26	52	1.61
18906411--18906460	13	3.8	13	86	0	64	16	4	22	58	1.55
18906347--18906449	35	3.0	34	83	4	136	17	3	26	52	1.62
18907037--18907071	10	3.7	9	88	7	52	22	0	2	74	0.95
18907032--18907103	7	10.3	7	75	21	55	23	4	1	70	1.12
18907149--18907196	25	2.0	25	84	12	64	60	10	4	25	1.47
18908244--18908288	3	15.0	3	100	0	90	33	0	0	66	0.92
18909719--18909756	18	2.1	18	90	5	58	5	0	13	81	0.85
18910043--18910081	3	13.0	3	94	0	69	64	0	2	33	1.08
18910312--18910564	78	3.3	76	80	8	268	42	19	11	26	1.85
18910285--18910531	118	2.1	118	89	3	374	42	19	10	27	1.84
18910285--18910530	39	6.3	39	79	6	201	42	19	10	27	1.83
18910493--18910563	33	2.2	33	92	0	115	43	18	12	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18918296--18918367	36	2.0	36	91	0	117	34	9	16	38	1.82
18924115--18924139	9	2.8	9	100	0	50	8	20	12	60	1.57
18924742--18924782	3	13.7	3	89	0	64	34	2	0	63	1.08
18927192--18927456	143	1.9	143	80	4	311	33	12	13	40	1.83
18928408--18928466	30	1.9	31	93	3	102	40	28	1	28	1.66
18929444--18929490	8	5.9	8	89	0	58	78	0	4	17	0.90
18929444--18929490	24	2.0	24	86	0	67	78	0	4	17	0.90
18930506--18930656	37	4.1	37	80	2	169	34	17	8	39	1.81
18930511--18930657	73	2.0	75	83	2	190	35	17	8	39	1.79
18931392--18931474	33	2.5	32	86	3	112	36	10	18	34	1.85
18932610--18932643	2	17.0	2	100	0	68	50	0	0	50	1.00
18934221--18934394	86	2.0	85	87	3	251	39	8	13	37	1.76
18936349--18936382	2	17.0	2	100	0	68	0	50	0	50	1.00
18936382--18936419	2	19.0	2	100	0	76	50	0	0	50	1.00
18938019--18938103	44	1.9	44	90	0	134	37	17	15	29	1.91
18938024--18938113	44	2.0	44	86	0	126	37	15	15	31	1.89
18938052--18938303	91	2.8	89	84	4	317	36	17	12	33	1.87
18940456--18940495	10	4.2	9	81	12	53	85	0	15	0	0.61
18940497--18940554	3	19.3	3	100	0	116	67	0	0	32	0.91
18940692--18940983	44	6.7	44	78	5	236	41	15	14	29	1.86
18940720--18940946	87	2.6	88	80	4	246	40	14	14	29	1.86
18940682--18940972	131	2.2	131	80	7	322	40	15	14	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18940721--18940978	88	3.0	86	81	4	268	39	15	14	30	1.87
18940954--18941231	49	5.6	49	83	1	297	39	20	10	28	1.86
18940942--18941231	99	2.9	97	82	6	350	40	20	10	28	1.86
18947822--18947854	17	1.9	17	93	0	57	54	12	9	24	1.66
18949871--18949901	16	1.9	16	93	0	53	41	9	16	32	1.80
18958302--18958331	14	2.1	14	93	0	51	36	16	0	46	1.47
18969036--18969102	10	6.7	10	71	5	55	73	2	1	22	1.06
18969211--18969251	21	2.0	21	85	0	55	56	0	7	36	1.27
18969298--18969376	18	4.2	18	79	19	81	30	1	5	63	1.24
18969333--18969386	19	2.8	19	83	8	56	37	1	3	57	1.27
18969619--18969680	28	2.2	28	80	11	74	32	1	1	64	1.13
18975521--18975558	16	2.3	17	86	4	51	73	2	0	23	0.95
18979418--18979597	95	1.9	95	85	5	249	40	7	8	42	1.65
18979740--18979799	14	4.3	13	78	19	59	66	1	1	30	1.11
18980769--18980819	25	2.0	25	84	0	66	62	1	13	21	1.40
18980876--18980932	6	9.3	6	76	16	55	77	0	1	21	0.86
18980878--18980932	18	3.1	19	85	12	73	76	0	1	21	0.88
18980888--18980919	13	2.5	13	95	5	57	78	0	0	21	0.76
18980902--18980932	16	1.9	16	100	0	62	80	0	0	19	0.71
18981388--18981500	32	3.5	32	75	4	93	42	7	29	20	1.80
18981984--18982060	41	1.9	40	83	2	100	64	10	3	20	1.40
18982184--18982238	7	7.9	7	91	0	65	54	25	1	18	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18982177--18982222	21	2.2	21	84	0	56	65	17	2	15	1.37
18982184--18982233	21	2.4	21	89	0	73	56	24	2	18	1.52
18983082--18983124	19	2.3	19	84	8	52	67	4	0	27	1.10
18984046--18984085	21	1.9	21	94	0	71	50	2	27	20	1.61
18984516--18984603	41	2.1	42	81	6	99	39	13	10	36	1.79
18984516--18985089	44	13.2	44	74	10	344	41	12	12	34	1.79
18984611--18984822	87	2.4	87	79	5	216	42	12	10	33	1.78
18984638--18984955	87	3.7	87	79	7	218	42	11	11	34	1.78
18984933--18985082	43	3.4	44	81	7	155	40	12	12	34	1.80
18985133--18985256	48	2.6	48	73	10	110	42	16	4	37	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133