genome.fa.s645.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  21  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5220824--5220863	19	2.1	19	100	0	80	45	0	5	50	1.23
5220871--5220936	24	2.8	23	84	8	80	60	0	1	37	1.06
5221020--5221061	22	1.9	21	85	9	57	33	11	4	50	1.60
5227451--5227487	19	1.9	19	88	0	56	45	2	8	43	1.47
5228430--5228476	2	23.5	2	100	0	94	48	0	51	0	1.00
5228866--5228914	26	1.9	25	83	4	62	48	8	8	34	1.62
5229837--5229870	15	2.2	16	89	5	52	61	0	0	38	0.96
5230962--5231012	19	2.7	19	87	0	75	52	3	3	39	1.38
5233201--5233246	21	2.2	21	96	0	83	10	0	30	58	1.32
5233209--5233254	21	2.2	21	92	0	74	13	0	23	63	1.30
5233223--5233269	15	3.2	14	85	8	58	17	0	23	59	1.37
5233202--5233276	36	2.1	36	87	5	107	14	0	25	60	1.35
5233832--5233860	14	2.0	15	93	6	51	82	3	0	13	0.79
5234956--5234983	14	2.0	14	100	0	56	35	0	0	64	0.94
5236222--5236259	14	2.9	13	88	7	51	36	5	7	50	1.54
5237532--5237572	15	2.9	14	82	7	55	65	0	0	34	0.93
5242867--5242997	43	3.0	43	89	0	199	49	19	18	12	1.78
5242974--5243152	90	2.0	90	96	0	331	45	18	12	22	1.83
5245119--5245443	175	1.9	172	88	3	490	26	24	11	38	1.89
5251546--5251649	52	2.0	52	86	3	147	48	8	16	26	1.75
5251836--5251905	35	2.0	35	85	0	95	38	2	17	41	1.64
5252085--5252127	23	2.0	21	86	9	59	27	4	4	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5257872--5257905	12	3.0	12	87	12	54	88	11	0	0	0.52
5258032--5258132	6	16.3	6	72	10	60	6	12	31	48	1.68
5259409--5259440	16	2.0	16	93	0	55	9	0	3	87	0.64
5259499--5259579	22	3.6	22	72	19	60	4	13	2	79	1.01
5259500--5259542	13	3.2	13	80	6	50	2	9	2	86	0.76
5265614--5265657	17	2.8	16	83	16	56	6	11	4	77	1.11
5268072--5268111	16	2.6	16	92	4	64	37	5	7	50	1.53
5275886--5275950	26	2.6	25	75	13	64	47	0	0	52	1.00
5277559--5277605	3	15.7	3	100	0	94	31	0	0	68	0.90
5278517--5278564	20	2.4	20	96	0	87	31	8	14	45	1.74
5279738--5279812	22	3.4	22	65	23	57	25	20	13	41	1.88
5284957--5284986	15	2.0	15	93	0	51	40	10	6	43	1.64
5284853--5285137	126	2.3	125	78	4	295	32	14	12	40	1.83
5287812--5287853	14	3.0	14	89	6	59	76	2	4	16	1.07
5293952--5294059	39	2.8	39	88	1	164	13	0	62	24	1.32
5294543--5294591	25	1.9	26	91	4	82	46	2	10	40	1.49
5295860--5295924	32	2.0	32	91	5	105	36	10	10	41	1.75
5298035--5298070	18	2.0	18	88	0	54	27	0	44	27	1.55
5298416--5298507	18	4.9	18	70	15	71	31	34	5	28	1.80
5298420--5298461	21	2.0	21	95	0	75	26	42	2	28	1.67
5315114--5315156	5	8.4	5	80	14	52	20	4	0	74	1.00
5315084--5315156	38	2.0	36	84	15	96	21	5	2	69	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5321492--5321517	10	2.6	10	100	0	52	69	7	11	11	1.37
5324961--5325007	14	3.4	14	85	5	60	25	4	2	68	1.19
5330700--5331088	176	2.2	175	79	4	399	21	21	12	44	1.85
5331292--5331689	121	3.3	120	76	6	372	19	19	14	46	1.83
5335179--5335238	12	4.8	12	75	18	52	21	5	0	73	1.02
5335212--5335249	17	2.2	18	90	4	60	21	5	0	73	1.02
5335279--5335317	19	2.1	19	90	0	60	38	5	2	53	1.37
5335764--5335813	18	2.8	18	84	6	57	26	2	2	70	1.09
5337110--5337165	26	2.2	26	86	0	76	41	7	12	39	1.70
5340116--5340178	32	1.9	32	83	6	81	52	1	3	42	1.27
5340551--5340585	17	1.9	17	88	11	52	48	0	0	51	1.00
5341862--5341920	16	3.6	16	86	4	73	50	3	5	40	1.41
5342530--5342563	17	1.9	18	88	5	52	67	2	8	20	1.31
5345964--5345998	15	2.3	15	90	9	54	25	0	2	71	1.00
5346011--5346043	17	1.9	17	93	0	57	21	0	0	78	0.75
5346010--5346045	11	3.2	11	88	4	54	27	0	0	72	0.85
5346068--5346156	14	6.9	14	71	18	52	34	1	2	61	1.15
5346095--5346176	23	3.5	23	80	11	94	36	0	3	59	1.15
5346095--5346181	27	3.4	26	73	15	83	36	0	3	59	1.14
5346598--5346659	10	5.8	12	75	17	57	43	0	8	48	1.32
5355464--5355488	7	3.6	7	100	0	50	76	12	12	0	1.04
5355462--5355495	14	2.4	14	85	0	50	82	8	8	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5355545--5355586	17	2.6	16	78	14	50	57	2	2	38	1.25
5356173--5356229	28	2.0	28	86	6	80	77	1	17	3	1.00
5356365--5356394	15	2.0	15	93	0	51	76	0	0	23	0.78
5356677--5356735	11	5.0	11	79	8	55	83	3	6	6	0.91
5356683--5356735	24	2.3	22	78	18	54	83	3	7	5	0.92
5357498--5357540	23	1.9	23	90	4	70	67	2	20	9	1.30
5357642--5357682	22	2.0	21	85	9	57	73	9	9	7	1.26
5357883--5357912	2	15.0	2	92	0	51	46	0	0	53	1.00
5368409--5368592	90	2.0	90	92	2	307	41	16	13	29	1.86
5378378--5378422	22	2.0	22	87	8	65	44	6	8	40	1.62
5386675--5386725	26	1.9	27	84	11	70	37	9	25	27	1.87
5389455--5389507	15	3.5	15	76	7	54	47	3	0	49	1.19
5389448--5389519	29	2.5	29	78	14	78	51	2	0	45	1.15
5389540--5389566	14	1.9	14	100	0	54	44	0	0	55	0.99
5390507--5390542	17	2.1	17	100	0	72	33	11	5	50	1.61
5391712--5391922	105	2.0	105	98	0	404	37	7	12	42	1.71
5393380--5393515	22	6.2	22	71	6	96	49	3	8	38	1.50
5393385--5393423	11	3.5	11	80	13	53	51	2	7	38	1.44
5393364--5393490	66	1.9	65	81	7	150	47	3	8	40	1.50
5393600--5393638	11	3.5	11	82	10	53	58	5	2	33	1.33
5393589--5393662	22	3.4	22	83	5	78	52	2	4	40	1.34
5393614--5393830	22	10.2	22	71	10	76	47	3	7	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5393793--5393846	21	2.5	21	85	8	65	53	7	1	37	1.40
5393733--5393887	11	14.3	11	68	8	75	51	5	5	37	1.48
5393952--5394055	43	2.4	44	81	1	111	50	1	8	39	1.44
5394209--5394313	19	5.2	19	72	10	77	48	3	7	40	1.50
5393837--5394313	22	22.3	21	70	11	145	50	4	7	37	1.51
5394382--5394508	65	1.9	66	82	1	157	46	8	7	37	1.64
5394382--5394453	22	3.3	22	70	14	60	45	12	6	34	1.69
5394424--5394529	22	4.9	22	75	3	72	49	8	5	36	1.57
5394774--5394952	22	8.1	22	73	10	105	50	3	8	37	1.51
5395541--5395578	16	2.4	17	86	13	62	31	0	5	63	1.17
5395679--5395730	16	3.5	15	82	7	52	78	1	3	15	0.98
5396102--5396134	13	2.5	13	86	13	50	57	18	3	21	1.53
5396157--5396200	10	4.5	10	80	5	54	72	15	0	11	1.11
5396167--5396202	9	3.9	9	89	7	54	69	13	0	16	1.19
5396157--5396200	19	2.3	19	88	0	61	72	15	0	11	1.11
5396166--5396202	19	1.9	19	94	0	65	70	13	0	16	1.17
5396483--5396632	51	2.9	51	82	1	165	36	16	8	39	1.79
5396735--5396823	22	4.4	21	72	21	64	44	4	10	40	1.58
5396748--5396780	16	2.1	15	94	5	57	51	6	6	36	1.51
5396764--5396845	22	3.8	22	74	9	78	47	2	9	40	1.50
5396764--5396870	43	2.5	43	80	4	117	44	2	11	41	1.54
5396884--5396999	44	2.6	44	75	5	117	43	6	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5396944--5396999	22	2.5	22	88	0	85	44	7	10	37	1.67
5397062--5397251	22	8.7	22	72	6	118	43	5	10	40	1.62
5397091--5397248	66	2.4	65	78	8	149	44	4	10	40	1.59
5397535--5397607	21	3.5	21	78	0	83	53	5	1	39	1.33
5397618--5397674	21	2.7	22	81	5	73	45	10	5	38	1.61
5397644--5397697	27	2.0	27	85	0	72	55	7	1	35	1.39
5397747--5397792	19	2.3	20	78	14	51	43	2	0	54	1.12
5398339--5398416	38	2.1	38	100	0	156	12	20	5	61	1.50
5401937--5402065	21	6.2	21	78	10	113	39	7	5	47	1.55
5402374--5402467	44	2.2	43	84	1	116	36	12	9	41	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133