genome.fa.s645.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  84  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16659082--16659133	17	2.9	18	75	18	54	69	1	7	21	1.24
16659126--16659154	13	2.3	13	94	5	51	82	6	0	10	0.83
16659901--16660004	51	2.0	53	83	7	131	49	7	4	38	1.53
16660825--16660854	12	2.6	12	94	5	53	33	10	6	50	1.62
16662677--16662782	34	3.1	34	79	5	99	46	14	17	21	1.84
16662695--16662803	33	3.3	33	78	8	114	48	13	17	20	1.80
16662699--16662774	34	2.3	34	86	2	100	50	14	17	18	1.79
16662627--16662803	33	5.3	32	75	11	106	50	12	17	19	1.77
16662983--16663100	62	1.9	61	84	5	157	27	19	15	37	1.92
16672843--16672869	2	13.5	2	100	0	54	48	0	0	51	1.00
16674624--16674737	58	2.0	58	83	0	147	36	15	16	30	1.91
16676121--16676183	21	2.8	21	86	11	81	66	1	3	28	1.16
16676164--16676207	18	2.6	18	89	7	65	68	0	2	29	1.02
16676116--16676193	22	3.5	21	78	18	63	67	1	2	28	1.11
16676121--16676184	22	2.8	22	79	13	76	67	1	3	28	1.15
16676269--16676325	25	2.3	25	87	6	80	61	1	1	35	1.17
16676310--16676336	8	3.4	8	100	0	54	88	0	0	11	0.50
16676354--16676407	23	2.3	23	81	6	65	61	0	3	35	1.14
16676316--16676389	31	2.4	30	82	6	96	67	1	1	29	1.07
16676515--16676552	18	2.1	18	95	0	67	50	0	5	44	1.24
16676641--16676686	24	2.0	24	91	4	76	65	2	6	26	1.28
16679140--16679174	7	4.9	7	96	3	61	28	14	42	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16684813--16684842	16	1.9	15	93	6	51	40	6	3	50	1.45
16686602--16686901	143	2.1	144	79	5	313	36	12	13	38	1.82
16688312--16688509	7	29.6	7	69	22	81	44	35	0	19	1.55
16688313--16688483	67	2.6	67	82	10	210	44	35	0	19	1.55
16688387--16688506	46	2.8	41	83	11	145	44	34	0	21	1.53
16688447--16688506	20	3.0	21	97	2	106	45	36	0	18	1.50
16697597--16697687	11	9.0	11	68	26	51	46	39	1	13	1.50
16697597--16697704	29	3.7	28	78	10	110	46	38	0	13	1.50
16697694--16697735	16	2.4	18	88	11	70	47	38	7	7	1.58
16703732--16703772	20	2.0	20	90	0	64	51	9	9	29	1.67
16709215--16709249	18	2.0	18	88	5	54	8	17	0	74	1.06
16712512--16712552	19	2.2	19	86	8	57	48	19	12	19	1.80
16718201--16718239	20	2.0	20	90	10	62	74	2	15	7	1.15
16719244--16719285	15	2.8	15	88	0	66	52	26	2	19	1.58
16720432--16720483	22	2.4	22	80	9	61	3	17	0	78	0.89
16720436--16720482	21	2.2	21	84	3	58	4	17	0	78	0.90
16721735--16721770	18	1.9	19	94	5	65	66	8	5	19	1.38
16722975--16723008	11	3.2	10	88	12	50	58	0	0	41	0.98
16724048--16724095	19	2.5	19	80	9	62	31	6	25	37	1.81
16724713--16724740	9	3.1	9	100	0	56	0	32	0	67	0.91
16724710--16724775	7	8.6	7	75	17	51	1	19	3	75	1.01
16724710--16724775	16	4.3	15	81	12	62	1	19	3	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16724815--16724921	46	2.3	47	82	6	128	42	17	10	29	1.83
16724994--16725275	59	4.7	59	83	3	332	28	22	14	34	1.94
16724993--16725303	118	2.6	118	84	2	370	28	22	15	33	1.94
16730284--16730334	26	2.0	26	96	0	93	49	3	15	31	1.63
16730692--16730746	28	1.9	28	88	3	83	49	23	5	21	1.70
16736098--16736131	16	2.1	16	100	0	68	23	0	23	52	1.47
16736356--16736390	17	2.1	17	89	10	54	54	0	0	45	0.99
16736361--16736400	7	6.1	7	82	11	50	47	0	0	52	1.00
16736356--16736399	16	2.7	16	83	13	54	50	0	0	50	1.00
16737737--16737780	21	2.0	22	91	4	72	45	0	2	52	1.13
16739190--16739227	18	2.1	18	90	0	58	42	10	23	23	1.85
16740396--16740435	21	2.0	20	85	5	53	25	5	0	70	1.08
16741556--16741603	19	2.5	19	100	0	96	16	4	43	35	1.67
16741516--16741580	31	2.1	31	85	0	85	18	4	36	40	1.71
16744424--16744470	8	5.9	8	75	9	51	12	2	2	82	0.84
16744431--16744475	24	1.9	23	90	4	72	13	6	2	77	1.05
16744833--16744891	29	2.0	29	81	12	68	47	6	0	45	1.29
16745672--16745696	10	2.5	10	100	0	50	16	0	0	84	0.63
16745775--16745846	9	7.7	9	69	25	51	11	6	2	79	1.03
16745792--16745855	17	3.8	17	84	10	69	9	7	4	78	1.09
16750315--16750376	27	2.3	27	97	0	115	20	11	30	37	1.88
16752929--16752972	21	2.2	21	88	8	65	59	6	0	34	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16753192--16753243	18	2.8	18	76	5	50	42	5	1	50	1.37
16761383--16761421	20	1.9	21	84	5	53	33	2	2	61	1.23
16761692--16761730	20	2.0	20	85	10	53	61	0	10	28	1.28
16764075--16764123	23	2.1	23	81	7	55	71	4	4	20	1.19
16766884--16766933	15	3.4	15	83	5	66	32	10	18	40	1.83
16770008--16770070	28	2.3	27	76	10	65	38	1	3	57	1.24
16770695--16770784	38	2.4	39	76	12	98	30	0	5	64	1.16
16771325--16771350	2	13.0	2	100	0	52	50	0	0	50	1.00
16771694--16771724	15	2.1	15	93	0	53	29	12	9	48	1.73
16773408--16773443	8	4.5	8	90	10	56	88	0	11	0	0.50
16775321--16775482	3	56.7	3	78	14	146	64	3	1	30	1.20
16775436--16775480	17	2.6	17	82	3	63	73	8	0	17	1.08
16775670--16775850	56	3.3	54	75	10	177	41	14	20	23	1.89
16775672--16775876	111	1.8	111	83	4	270	40	14	20	23	1.90
16786709--16786735	7	3.9	7	100	0	54	85	0	0	14	0.61
16788574--16788706	3	48.3	3	69	16	74	60	4	3	32	1.32
16788574--16788652	5	15.2	5	88	4	95	58	2	2	36	1.25
16791960--16792047	20	4.5	20	74	17	78	55	4	5	34	1.44
16793563--16793650	6	14.0	6	86	4	95	68	4	0	27	1.09
16793963--16794109	18	8.2	18	67	20	67	40	12	15	30	1.85
16793944--16793994	26	2.0	26	88	7	77	43	13	15	27	1.85
16794076--16794129	18	2.9	19	86	5	67	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16794398--16794451	22	2.4	23	75	12	58	50	5	9	35	1.58
16813441--16813494	27	2.0	27	85	7	74	33	18	33	14	1.92
16813900--16813933	17	2.0	17	94	0	59	23	8	47	20	1.78
16819581--16819648	27	2.5	27	72	13	68	33	16	35	14	1.89
16830517--16830647	63	2.1	63	81	5	149	35	16	17	29	1.92
16830883--16831170	125	2.3	125	81	6	323	38	13	16	31	1.87
16830839--16831079	63	3.9	62	73	10	204	41	14	15	29	1.86
16831260--16831329	35	2.0	35	88	0	104	31	11	22	34	1.90
16842270--16842585	161	2.0	161	83	5	397	31	9	15	43	1.79
16847883--16848071	98	2.0	95	82	7	229	40	14	11	34	1.81
16848128--16848246	62	2.0	59	85	8	159	37	15	12	34	1.85
16852774--16852823	12	4.6	11	79	16	52	72	12	2	14	1.22
16853005--16853053	17	2.9	17	90	0	71	65	8	12	14	1.47
16859385--16859421	18	2.2	18	85	9	51	43	0	2	54	1.14
16866797--16866892	42	2.3	42	98	0	183	52	14	8	25	1.69
16867609--16867655	18	2.6	18	96	0	85	53	10	4	31	1.55
16869094--16869127	17	2.0	17	94	0	59	52	14	8	23	1.69
16876030--16876073	3	14.7	3	87	0	61	31	4	2	61	1.28
16876406--16876444	20	2.0	20	84	0	51	28	7	30	33	1.85
16876477--16876516	11	3.5	11	86	3	53	12	0	7	80	0.91
16876477--16876516	12	3.4	12	89	3	64	12	0	7	80	0.91
16883348--16883729	189	2.0	189	97	0	719	38	17	19	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16888269--16888664	118	3.4	116	81	6	413	19	19	15	45	1.86
16889913--16889944	15	2.1	15	94	0	55	12	0	3	84	0.74
16889908--16889949	20	2.1	20	86	8	59	14	0	2	83	0.75
16904690--16904930	123	2.0	123	100	0	482	14	19	25	41	1.89
16905089--16905226	68	2.0	67	88	1	204	31	5	14	47	1.68
16905170--16905379	110	1.9	110	91	0	339	32	5	15	46	1.70
16907089--16907122	14	2.3	15	90	5	52	29	2	0	67	1.05
16907068--16907121	17	3.3	16	78	19	58	24	5	0	70	1.08
16907411--16907446	6	5.8	6	96	3	63	33	13	0	52	1.41
16910337--16910427	10	8.9	10	77	12	78	6	0	10	82	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133